RNA–Protein interactions for RNA: ENST00000487620.1

ZNF3-215, Transcript of zinc finger protein 3, humanhuman

TSL 2

Gene ZNF3, Length 2,660 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF3-215ENST00000487620 NISCHQ9Y2I1 1504 aa19.61■□□□□ 0.73
ZNF3-215ENST00000487620 SHROOM4Q9ULL8 1493 aa17.04■□□□□ 0.32
ZNF3-215ENST00000487620 SUPT5HO00267 1087 aaKnown RBP16.81■□□□□ 0.28
ZNF3-215ENST00000487620 ZCCHC6Q5VYS8 1495 aaKnown RBP16.62■□□□□ 0.25
ZNF3-215ENST00000487620 CCDC180Q9P1Z9 1646 aa16.54■□□□□ 0.24
ZNF3-215ENST00000487620 DCAF8L2P0C7V8 631 aa16.39■□□□□ 0.21
ZNF3-215ENST00000487620 MYO15BQ96JP2 1530 aa16.38■□□□□ 0.21
ZNF3-215ENST00000487620 CHIC1Q5VXU3 224 aa16.36■□□□□ 0.21
ZNF3-215ENST00000487620 HRCP23327 699 aa16.24■□□□□ 0.19
ZNF3-215ENST00000487620 PCGF6Q9BYE7 350 aa16.16■□□□□ 0.18
ZNF3-215ENST00000487620 DCAF1Q9Y4B6 1507 aa16.02■□□□□ 0.15
ZNF3-215ENST00000487620 LOC105371045A0A1W2PR82 267 aa15.95■□□□□ 0.14
ZNF3-215ENST00000487620 PPARGC1BQ86YN6 1023 aaKnown RBP15.95■□□□□ 0.14
ZNF3-215ENST00000487620 ABCC9O60706 1549 aa15.74■□□□□ 0.11
ZNF3-215ENST00000487620 TRIM26Q12899 539 aaPredicted RBP15.73■□□□□ 0.11
ZNF3-215ENST00000487620 SCRIBQ14160 1630 aa15.65■□□□□ 0.1
ZNF3-215ENST00000487620 RSF1Q96T23 1441 aaPredicted RBP15.62■□□□□ 0.09
ZNF3-215ENST00000487620 TRIM41Q8WV44 630 aa15.6■□□□□ 0.09
ZNF3-215ENST00000487620 FAM9AQ8IZU1 332 aaPredicted RBP15.55■□□□□ 0.08
ZNF3-215ENST00000487620 RB1CC1Q8TDY2 1594 aa15.54■□□□□ 0.08
ZNF3-215ENST00000487620 EHMT2Q96KQ7 1210 aa15.48■□□□□ 0.07
ZNF3-215ENST00000487620 ZEB1P37275 1124 aaPredicted RBP15.46■□□□□ 0.07
ZNF3-215ENST00000487620 CECR2Q9BXF3 1484 aa15.33■□□□□ 0.04
ZNF3-215ENST00000487620 MROH2BQ7Z745 1585 aa15.3■□□□□ 0.04
ZNF3-215ENST00000487620 WIZO95785 1651 aa15.26■□□□□ 0.03
ZNF3-215ENST00000487620 NACADO15069 1562 aa15.25■□□□□ 0.03
ZNF3-215ENST00000487620 SCAF1Q9H7N4 1312 aaKnown RBP15.14■□□□□ 0.01
ZNF3-215ENST00000487620 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.13■□□□□ 0.01
ZNF3-215ENST00000487620 BAZ1AQ9NRL2 1556 aaPredicted RBP15.13■□□□□ 0.01
ZNF3-215ENST00000487620 CCER1Q8TC90 406 aaPredicted RBP15.1■□□□□ 0.01
ZNF3-215ENST00000487620 EIF4G1Q04637 1599 aaKnown RBP15.06■□□□□ 0
ZNF3-215ENST00000487620 TTBK1Q5TCY1 1321 aaPredicted RBP15.03■□□□□ -0
ZNF3-215ENST00000487620 PELP1Q8IZL8 1130 aaKnown RBP15.03■□□□□ -0
ZNF3-215ENST00000487620 ABCC8Q09428 1581 aa15.02□□□□□ -0.01
ZNF3-215ENST00000487620 CCDC88BA6NC98 1476 aa14.97□□□□□ -0.01
ZNF3-215ENST00000487620 TOP2AP11388 1531 aaKnown RBP14.96□□□□□ -0.02
ZNF3-215ENST00000487620 CEP162Q5TB80 1403 aa14.93□□□□□ -0.02
ZNF3-215ENST00000487620 SMARCA4P51532 1647 aa14.91□□□□□ -0.02
ZNF3-215ENST00000487620 DIEXFQ68CQ4 756 aaKnown RBP14.9□□□□□ -0.02
ZNF3-215ENST00000487620 ACIN1Q9UKV3 1341 aaKnown RBP14.9□□□□□ -0.02
ZNF3-215ENST00000487620 WRNQ14191 1432 aaPredicted RBP eCLIP14.9□□□□□ -0.02
ZNF3-215ENST00000487620 SMARCA2P51531 1590 aa14.9□□□□□ -0.02
ZNF3-215ENST00000487620 SOGA1O94964 1423 aa14.9□□□□□ -0.02
ZNF3-215ENST00000487620 NEUROD1Q13562 356 aa14.89□□□□□ -0.03
ZNF3-215ENST00000487620 UBTFP17480 764 aaKnown RBP14.85□□□□□ -0.03
ZNF3-215ENST00000487620 TNIKQ9UKE5 1360 aa14.84□□□□□ -0.03
ZNF3-215ENST00000487620 UNC13AQ9UPW8 1703 aa14.83□□□□□ -0.04
ZNF3-215ENST00000487620 RUSC2Q8N2Y8 1516 aa14.82□□□□□ -0.04
ZNF3-215ENST00000487620 CSRNP3Q8WYN3 585 aa14.82□□□□□ -0.04
ZNF3-215ENST00000487620 CENPBP07199 599 aaPredicted RBP14.8□□□□□ -0.04
ZNF3-215ENST00000487620 GTF3C3Q9Y5Q9 886 aa14.78□□□□□ -0.04
ZNF3-215ENST00000487620 EEA1Q15075 1411 aa14.78□□□□□ -0.04
ZNF3-215ENST00000487620 GOLGA3Q08378 1498 aa14.74□□□□□ -0.05
ZNF3-215ENST00000487620 ZNF316A6NFI3 1004 aaPredicted RBP14.7□□□□□ -0.06
ZNF3-215ENST00000487620 HNRNPUL2Q1KMD3 747 aaKnown RBP14.67□□□□□ -0.06
ZNF3-215ENST00000487620 PABPN1Q86U42 306 aaKnown RBP eCLIP14.67□□□□□ -0.06
ZNF3-215ENST00000487620 YTHDC1Q96MU7 727 aaKnown RBP14.64□□□□□ -0.07
ZNF3-215ENST00000487620 CEP164Q9UPV0 1460 aa14.63□□□□□ -0.07
ZNF3-215ENST00000487620 SYNJ1O43426 1573 aa14.62□□□□□ -0.07
ZNF3-215ENST00000487620 CLIP1P30622 1438 aa14.6□□□□□ -0.07
ZNF3-215ENST00000487620 KIF21BO75037 1637 aa14.59□□□□□ -0.07
ZNF3-215ENST00000487620 RANGAP1P46060 587 aaPredicted RBP14.58□□□□□ -0.08
ZNF3-215ENST00000487620 BICRAQ9NZM4 1560 aa14.57□□□□□ -0.08
ZNF3-215ENST00000487620 APLP2Q06481 763 aa14.57□□□□□ -0.08
ZNF3-215ENST00000487620 MIER1Q8N108 512 aa14.55□□□□□ -0.08
ZNF3-215ENST00000487620 PEG3Q9GZU2 1588 aa14.55□□□□□ -0.08
ZNF3-215ENST00000487620 VPS8Q8N3P4 1428 aa14.54□□□□□ -0.08
ZNF3-215ENST00000487620 RAPGEF2Q9Y4G8 1499 aa14.52□□□□□ -0.09
ZNF3-215ENST00000487620 BAZ1BQ9UIG0 1483 aaKnown RBP14.49□□□□□ -0.09
ZNF3-215ENST00000487620 ATAD2BQ9ULI0 1458 aa14.46□□□□□ -0.09
ZNF3-215ENST00000487620 TOP2BQ02880 1626 aa14.39□□□□□ -0.11
ZNF3-215ENST00000487620 DHX57Q6P158 1386 aaKnown RBP14.33□□□□□ -0.11
ZNF3-215ENST00000487620 BIVM-ERCC5R4GMW8 1640 aa14.33□□□□□ -0.12
ZNF3-215ENST00000487620 KANK4Q5T7N3 995 aaPredicted RBP14.32□□□□□ -0.12
ZNF3-215ENST00000487620 ARAP1Q96P48 1450 aa14.32□□□□□ -0.12
ZNF3-215ENST00000487620 ERICH3Q5RHP9 1530 aa14.31□□□□□ -0.12
ZNF3-215ENST00000487620 CLSPNQ9HAW4 1339 aa14.31□□□□□ -0.12
ZNF3-215ENST00000487620 MYT1Q01538 1121 aa14.3□□□□□ -0.12
ZNF3-215ENST00000487620 PRXQ9BXM0 1461 aa14.29□□□□□ -0.12
ZNF3-215ENST00000487620 ITGAEP38570 1179 aa14.23□□□□□ -0.13
ZNF3-215ENST00000487620 CUX1P39880 1505 aa14.22□□□□□ -0.13
ZNF3-215ENST00000487620 RRBP1Q9P2E9 1410 aaKnown RBP14.21□□□□□ -0.13
ZNF3-215ENST00000487620 KIF27Q86VH2 1401 aa14.21□□□□□ -0.14
ZNF3-215ENST00000487620 CCNB3Q8WWL7 1395 aa14.18□□□□□ -0.14
ZNF3-215ENST00000487620 ARHGAP35Q9NRY4 1499 aa14.16□□□□□ -0.14
ZNF3-215ENST00000487620 SUPT16HQ9Y5B9 1047 aaKnown RBP14.16□□□□□ -0.14
ZNF3-215ENST00000487620 CUX2O14529 1486 aa14.14□□□□□ -0.15
ZNF3-215ENST00000487620 HMGXB3Q12766 1538 aa14.13□□□□□ -0.15
ZNF3-215ENST00000487620 NCAPD3P42695 1498 aa14.11□□□□□ -0.15
ZNF3-215ENST00000487620 RAB3GAP2Q9H2M9 1393 aa14.1□□□□□ -0.15
ZNF3-215ENST00000487620 CFTRP13569 1480 aa14.08□□□□□ -0.16
ZNF3-215ENST00000487620 KCNH8Q96L42 1107 aa14.06□□□□□ -0.16
ZNF3-215ENST00000487620 MAPKBP1O60336 1514 aa14.06□□□□□ -0.16
ZNF3-215ENST00000487620 TIAM1Q13009 1591 aa14.05□□□□□ -0.16
ZNF3-215ENST00000487620 DNAJC5BQ9UF47 199 aa14.04□□□□□ -0.16
ZNF3-215ENST00000487620 IGF1RP08069 1367 aa14.02□□□□□ -0.17
ZNF3-215ENST00000487620 FAM50AQ14320 339 aaKnown RBP14.02□□□□□ -0.17
ZNF3-215ENST00000487620 SETD5Q9C0A6 1442 aa14.01□□□□□ -0.17
ZNF3-215ENST00000487620 PRDM2Q13029 1718 aa14□□□□□ -0.17
ZNF3-215ENST00000487620 SIN3AQ96ST3 1273 aa14□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 9.8 ms