RNA–Protein interactions for RNA: ENST00000467553.2

CCHCR1-211, Transcript of coiled-coil alpha-helical rod protein 1, humanhuman

TSL 3

Gene CCHCR1, Length 589 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCHCR1-211ENST00000467553 NISCHQ9Y2I1 1504 aa34.78■■■■□ 3.16
CCHCR1-211ENST00000467553 CCDC180Q9P1Z9 1646 aa31.24■■■□□ 2.59
CCHCR1-211ENST00000467553 ABCC9O60706 1549 aa31■■■□□ 2.55
CCHCR1-211ENST00000467553 RB1CC1Q8TDY2 1594 aa29.69■■■□□ 2.34
CCHCR1-211ENST00000467553 NACADO15069 1562 aa29.53■■■□□ 2.32
CCHCR1-211ENST00000467553 DCAF8L2P0C7V8 631 aa29.23■■■□□ 2.27
CCHCR1-211ENST00000467553 MYO15BQ96JP2 1530 aa29.21■■■□□ 2.27
CCHCR1-211ENST00000467553 DNAJC5BQ9UF47 199 aa28.98■■■□□ 2.23
CCHCR1-211ENST00000467553 UNC13AQ9UPW8 1703 aa28.93■■■□□ 2.22
CCHCR1-211ENST00000467553 PABPN1Q86U42 306 aaKnown RBP eCLIP28.85■■■□□ 2.21
CCHCR1-211ENST00000467553 DCAF1Q9Y4B6 1507 aa28.84■■■□□ 2.21
CCHCR1-211ENST00000467553 ZCCHC6Q5VYS8 1495 aaKnown RBP28.84■■■□□ 2.21
CCHCR1-211ENST00000467553 BICRAQ9NZM4 1560 aa28.73■■■□□ 2.19
CCHCR1-211ENST00000467553 SHROOM4Q9ULL8 1493 aa28.54■■■□□ 2.16
CCHCR1-211ENST00000467553 SCRIBQ14160 1630 aa28.32■■■□□ 2.12
CCHCR1-211ENST00000467553 CC2D2AQ9P2K1 1620 aa28.07■■■□□ 2.08
CCHCR1-211ENST00000467553 EIF4G1Q04637 1599 aaKnown RBP28.05■■■□□ 2.08
CCHCR1-211ENST00000467553 CECR2Q9BXF3 1484 aa27.99■■■□□ 2.07
CCHCR1-211ENST00000467553 NCAPD3P42695 1498 aa27.24■■□□□ 1.95
CCHCR1-211ENST00000467553 ATAD2BQ9ULI0 1458 aa27.12■■□□□ 1.93
CCHCR1-211ENST00000467553 SMARCA2P51531 1590 aa27.11■■□□□ 1.93
CCHCR1-211ENST00000467553 SMARCA4P51532 1647 aa27.1■■□□□ 1.93
CCHCR1-211ENST00000467553 HMGXB3Q12766 1538 aa27.05■■□□□ 1.92
CCHCR1-211ENST00000467553 BAZ1AQ9NRL2 1556 aaPredicted RBP27.03■■□□□ 1.92
CCHCR1-211ENST00000467553 PEG3Q9GZU2 1588 aa26.91■■□□□ 1.9
CCHCR1-211ENST00000467553 BAZ1BQ9UIG0 1483 aaKnown RBP26.86■■□□□ 1.89
CCHCR1-211ENST00000467553 CUX2O14529 1486 aa26.84■■□□□ 1.89
CCHCR1-211ENST00000467553 ERCC6Q03468 1493 aa26.84■■□□□ 1.89
CCHCR1-211ENST00000467553 MROH2BQ7Z745 1585 aa26.73■■□□□ 1.87
CCHCR1-211ENST00000467553 DNAJC5Q9H3Z4 198 aa26.7■■□□□ 1.86
CCHCR1-211ENST00000467553 NESP48681 1621 aa26.63■■□□□ 1.85
CCHCR1-211ENST00000467553 LAMC3Q9Y6N6 1575 aa26.63■■□□□ 1.85
CCHCR1-211ENST00000467553 PDS5BQ9NTI5 1447 aa26.48■■□□□ 1.83
CCHCR1-211ENST00000467553 THOC2Q8NI27 1593 aaKnown RBP26.42■■□□□ 1.82
CCHCR1-211ENST00000467553 WIZO95785 1651 aa26.41■■□□□ 1.82
CCHCR1-211ENST00000467553 CADPSQ9ULU8 1353 aa26.4■■□□□ 1.82
CCHCR1-211ENST00000467553 KIF21AQ7Z4S6 1674 aa26.34■■□□□ 1.81
CCHCR1-211ENST00000467553 RSF1Q96T23 1441 aaPredicted RBP26.23■■□□□ 1.79
CCHCR1-211ENST00000467553 MRC2Q9UBG0 1479 aa26.18■■□□□ 1.78
CCHCR1-211ENST00000467553 TOP2AP11388 1531 aaKnown RBP26.14■■□□□ 1.78
CCHCR1-211ENST00000467553 WDR62O43379 1518 aa26.12■■□□□ 1.77
CCHCR1-211ENST00000467553 CFTRP13569 1480 aa26.11■■□□□ 1.77
CCHCR1-211ENST00000467553 CEP164Q9UPV0 1460 aa26.1■■□□□ 1.77
CCHCR1-211ENST00000467553 FANCD2Q9BXW9 1451 aa26.05■■□□□ 1.76
CCHCR1-211ENST00000467553 PRDM2Q13029 1718 aa25.88■■□□□ 1.73
CCHCR1-211ENST00000467553 CCDC88BA6NC98 1476 aa25.82■■□□□ 1.72
CCHCR1-211ENST00000467553 URB2Q14146 1524 aaKnown RBP25.79■■□□□ 1.72
CCHCR1-211ENST00000467553 ABCC8Q09428 1581 aa25.65■■□□□ 1.7
CCHCR1-211ENST00000467553 OSCARQ8IYS5 282 aa25.62■■□□□ 1.69
CCHCR1-211ENST00000467553 IFT140Q96RY7 1462 aa25.6■■□□□ 1.69
CCHCR1-211ENST00000467553 TOPBP1Q92547 1522 aa25.57■■□□□ 1.68
CCHCR1-211ENST00000467553 DNMBPQ6XZF7 1577 aa25.51■■□□□ 1.67
CCHCR1-211ENST00000467553 ZNF608Q9ULD9 1512 aaPredicted RBP25.44■■□□□ 1.66
CCHCR1-211ENST00000467553 TRIM41Q8WV44 630 aa25.44■■□□□ 1.66
CCHCR1-211ENST00000467553 EIF4G3O43432 1585 aaKnown RBP25.35■■□□□ 1.65
CCHCR1-211ENST00000467553 TARBP1Q13395 1621 aaKnown RBP25.34■■□□□ 1.65
CCHCR1-211ENST00000467553 SUPT5HO00267 1087 aaKnown RBP25.33■■□□□ 1.65
CCHCR1-211ENST00000467553 POLA1P09884 1462 aaPredicted RBP25.3■■□□□ 1.64
CCHCR1-211ENST00000467553 AQRO60306 1485 aaKnown RBP eCLIP25.24■■□□□ 1.636e-9■■■■□ 24.1
CCHCR1-211ENST00000467553 WDR97A6NE52 1622 aa25.23■■□□□ 1.63
CCHCR1-211ENST00000467553 SOGA1O94964 1423 aa25.22■■□□□ 1.63
CCHCR1-211ENST00000467553 RIMBP3CA6NJZ7 1639 aa25.19■■□□□ 1.62
CCHCR1-211ENST00000467553 RIMBP3BA6NNM3 1639 aa25.19■■□□□ 1.62
CCHCR1-211ENST00000467553 RIMBP3Q9UFD9 1639 aa25.19■■□□□ 1.62
CCHCR1-211ENST00000467553 RAD54L2Q9Y4B4 1467 aa25.15■■□□□ 1.62
CCHCR1-211ENST00000467553 CHD1O14646 1710 aa25.14■■□□□ 1.61
CCHCR1-211ENST00000467553 FGD5Q6ZNL6 1462 aa25.14■■□□□ 1.61
CCHCR1-211ENST00000467553 ARHGEF11O15085 1522 aa25.13■■□□□ 1.61
CCHCR1-211ENST00000467553 CUX1P39880 1505 aa25.12■■□□□ 1.61
CCHCR1-211ENST00000467553 TDRD9Q8NDG6 1382 aaKnown RBP25.09■■□□□ 1.61
CCHCR1-211ENST00000467553 FBLN2P98095 1184 aa25.06■■□□□ 1.6
CCHCR1-211ENST00000467553 MAGI1Q96QZ7 1491 aaPredicted RBP25.02■■□□□ 1.6
CCHCR1-211ENST00000467553 GRIN2BQ13224 1484 aa25.02■■□□□ 1.6
CCHCR1-211ENST00000467553 SNAPC4Q5SXM2 1469 aa25■■□□□ 1.59
CCHCR1-211ENST00000467553 CHMP7Q8WUX9 453 aaPredicted RBP24.96■■□□□ 1.59
CCHCR1-211ENST00000467553 CYB5RLQ6IPT4 315 aa24.93■■□□□ 1.58
CCHCR1-211ENST00000467553 SYNJ1O43426 1573 aa24.93■■□□□ 1.58
CCHCR1-211ENST00000467553 ABCA10Q8WWZ4 1543 aa24.92■■□□□ 1.58
CCHCR1-211ENST00000467553 SYNJ2O15056 1496 aa24.92■■□□□ 1.58
CCHCR1-211ENST00000467553 GAPVD1Q14C86 1478 aa24.91■■□□□ 1.58
CCHCR1-211ENST00000467553 CLASP1Q7Z460 1538 aa24.89■■□□□ 1.57
CCHCR1-211ENST00000467553 PBRM1Q86U86 1689 aa24.88■■□□□ 1.57
CCHCR1-211ENST00000467553 ARAP1Q96P48 1450 aa24.87■■□□□ 1.57
CCHCR1-211ENST00000467553 WRNQ14191 1432 aaPredicted RBP eCLIP24.85■■□□□ 1.57
CCHCR1-211ENST00000467553 ABCA5Q8WWZ7 1642 aa24.84■■□□□ 1.57
CCHCR1-211ENST00000467553 TOP2BQ02880 1626 aa24.8■■□□□ 1.56
CCHCR1-211ENST00000467553 BIVM-ERCC5R4GMW8 1640 aa24.8■■□□□ 1.56
CCHCR1-211ENST00000467553 GRIN2AQ12879 1464 aa24.66■■□□□ 1.54
CCHCR1-211ENST00000467553 ERICH3Q5RHP9 1530 aa24.65■■□□□ 1.54
CCHCR1-211ENST00000467553 ADAMTS12P58397 1594 aa24.64■■□□□ 1.54
CCHCR1-211ENST00000467553 FHAD1B1AJZ9 1412 aa24.62■■□□□ 1.53
CCHCR1-211ENST00000467553 TRHP20396 242 aaPredicted RBP24.62■■□□□ 1.53
CCHCR1-211ENST00000467553 NUP160Q12769 1436 aa24.6■■□□□ 1.53
CCHCR1-211ENST00000467553 CEP170Q5SW79 1584 aa24.52■■□□□ 1.52
CCHCR1-211ENST00000467553 SHROOM2Q13796 1616 aa24.48■■□□□ 1.51
CCHCR1-211ENST00000467553 ERCC6L2Q5T890 1561 aa24.4■■□□□ 1.5
CCHCR1-211ENST00000467553 JPH4Q96JJ6 628 aa24.36■■□□□ 1.49
CCHCR1-211ENST00000467553 KIF27Q86VH2 1401 aa24.34■■□□□ 1.49
CCHCR1-211ENST00000467553 PRG4Q92954 1404 aaPredicted RBP24.32■■□□□ 1.48
CCHCR1-211ENST00000467553 CUL7Q14999 1698 aa24.3■■□□□ 1.48
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms