Protein–RNA interactions for Protein: P83369

LSM11, U7 snRNA-associated Sm-like protein LSm11, humanhuman

Known RBP eCLIP

Length 360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM11P83369 ASL-201ENST00000304874 2143 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.159e-7■■□□□ 14.1
LSM11P83369 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.059e-7■■□□□ 14.1
LSM11P83369 ASL-208ENST00000488343 198 ntTSL 313.89□□□□□ -0.199e-7■■□□□ 14.1
LSM11P83369 ASL-206ENST00000464970 640 ntTSL 313.71□□□□□ -0.219e-7■■□□□ 14.1
LSM11P83369 AC068533.4-201ENST00000450043 922 ntAPPRIS P1 TSL 5 BASIC9.92□□□□□ -0.829e-7■■□□□ 14.1
LSM11P83369 CIRBP-205ENST00000585913 833 ntTSL 318.67■□□□□ 0.584e-13■■□□□ 14.1
LSM11P83369 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC18.46■□□□□ 0.554e-13■■□□□ 14.1
LSM11P83369 CIRBP-209ENST00000586555 716 ntTSL 217.9■□□□□ 0.464e-13■■□□□ 14.1
LSM11P83369 CIRBP-220ENST00000588917 1087 ntTSL 217.39■□□□□ 0.374e-13■■□□□ 14.1
LSM11P83369 CIRBP-245ENST00000621399 1044 ntTSL 1 (best)16.49■□□□□ 0.234e-13■■□□□ 14.1
LSM11P83369 CIRBP-212ENST00000587169 3028 ntTSL 216.08■□□□□ 0.174e-13■■□□□ 14.1
LSM11P83369 CIRBP-203ENST00000444172 584 ntTSL 315.97■□□□□ 0.154e-13■■□□□ 14.1
LSM11P83369 CIRBP-237ENST00000592234 571 ntTSL 515.96■□□□□ 0.154e-13■■□□□ 14.1
LSM11P83369 CIRBP-232ENST00000591376 830 ntTSL 315.96■□□□□ 0.154e-13■■□□□ 14.1
LSM11P83369 CIRBP-210ENST00000586636 938 ntTSL 215.96■□□□□ 0.154e-13■■□□□ 14.1
LSM11P83369 CIRBP-227ENST00000590188 361 ntTSL 315.7■□□□□ 0.14e-13■■□□□ 14.1
LSM11P83369 CIRBP-206ENST00000585914 1052 ntTSL 515.04■□□□□ -04e-13■■□□□ 14.1
LSM11P83369 CIRBP-228ENST00000590347 3117 ntTSL 214.46□□□□□ -0.14e-13■■□□□ 14.1
LSM11P83369 CIRBP-242ENST00000593093 3528 ntTSL 213.6□□□□□ -0.234e-13■■□□□ 14.1
LSM11P83369 ING4-213ENST00000484795 1256 ntTSL 511.62□□□□□ -0.555e-7■■□□□ 14.1
LSM11P83369 ATP2A1-203ENST00000536376 3130 ntTSL 2 BASIC11.4□□□□□ -0.582e-9■■□□□ 14
LSM11P83369 ATP2A1-202ENST00000395503 3536 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.632e-9■■□□□ 14
LSM11P83369 ATP2A1-201ENST00000357084 3532 ntTSL 2 BASIC10.87□□□□□ -0.672e-9■■□□□ 14
LSM11P83369 NT5C3B-207ENST00000470690 1729 ntTSL 522.45■■□□□ 1.195e-7■■□□□ 14
LSM11P83369 NT5C3B-216ENST00000523903 1534 ntTSL 1 (best)19.71■□□□□ 0.755e-7■■□□□ 14
LSM11P83369 NT5C3B-201ENST00000393910 1253 ntTSL 218.61■□□□□ 0.575e-7■■□□□ 14
LSM11P83369 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.345e-7■■□□□ 14
LSM11P83369 NT5C3B-206ENST00000469698 1573 ntTSL 316.09■□□□□ 0.175e-7■■□□□ 14
LSM11P83369 NT5C3B-215ENST00000521789 993 ntTSL 3 BASIC14.74□□□□□ -0.055e-7■■□□□ 14
LSM11P83369 NECAB3-204ENST00000463246 766 ntTSL 314.33□□□□□ -0.125e-7■■□□□ 14
LSM11P83369 NT5C3B-213ENST00000517701 1028 ntTSL 213.71□□□□□ -0.215e-7■■□□□ 14
LSM11P83369 CHD8-214ENST00000557727 1146 nt11.57□□□□□ -0.565e-7■■□□□ 14
LSM11P83369 FANCA-223ENST00000567284 479 ntTSL 38.47□□□□□ -1.055e-7■■□□□ 14
LSM11P83369 CHD8-201ENST00000399982 8229 ntAPPRIS ALT2 TSL 1 (best) BASIC7.63□□□□□ -1.195e-7■■□□□ 14
LSM11P83369 CHD8-213ENST00000557364 8137 ntAPPRIS ALT2 TSL 5 BASIC7.34□□□□□ -1.235e-7■■□□□ 14
LSM11P83369 CHD8-202ENST00000430710 7420 ntAPPRIS P3 TSL 1 (best) BASIC5.45□□□□□ -1.545e-7■■□□□ 14
LSM11P83369 AMBP-201ENST00000265132 1434 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.124e-12■■□□□ 14
LSM11P83369 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.713e-6■■□□□ 14
LSM11P83369 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.463e-6■■□□□ 14
LSM11P83369 YBX3-208ENST00000540447 6393 ntTSL 27.8□□□□□ -1.163e-6■■□□□ 14
LSM11P83369 UNC13D-212ENST00000589670 668 ntTSL 315.33■□□□□ 0.041e-10■■□□□ 14
LSM11P83369 VARS2-208ENST00000477052 552 ntTSL 310.14□□□□□ -0.791e-6■■□□□ 14
LSM11P83369 GOLGA8B-203ENST00000484716 6114 ntTSL 1 (best)9.45□□□□□ -0.94e-8■■□□□ 14
LSM11P83369 UBE2D2-207ENST00000511691 543 ntTSL 214.09□□□□□ -0.152e-10■■□□□ 14
LSM11P83369 VDAC3-212ENST00000524291 533 ntTSL 212.61□□□□□ -0.393e-6■■□□□ 14
LSM11P83369 UBE2D2-201ENST00000253815 444 ntAPPRIS ALT1 TSL 5 BASIC10.26□□□□□ -0.772e-10■■□□□ 14
LSM11P83369 VDAC3-206ENST00000521158 949 ntAPPRIS ALT1 TSL 5 BASIC9.02□□□□□ -0.973e-6■■□□□ 14
LSM11P83369 ARL6IP4-217ENST00000540382 1677 ntTSL 523■■□□□ 1.279e-11■■□□□ 14
LSM11P83369 ARL6IP4-218ENST00000540708 1782 ntTSL 222.9■■□□□ 1.269e-11■■□□□ 14
LSM11P83369 ARL6IP4-211ENST00000454885 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC21.84■■□□□ 1.099e-11■■□□□ 14
LSM11P83369 ARL6IP4-210ENST00000453766 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.969e-11■■□□□ 14
LSM11P83369 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC20.09■□□□□ 0.819e-11■■□□□ 14
LSM11P83369 ARL6IP4-216ENST00000539770 1295 ntTSL 1 (best)19.42■□□□□ 0.79e-11■■□□□ 14
LSM11P83369 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.669e-11■■□□□ 14
LSM11P83369 ARL6IP4-214ENST00000536502 1273 ntTSL 218.44■□□□□ 0.549e-11■■□□□ 14
LSM11P83369 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC18.23■□□□□ 0.519e-11■■□□□ 14
LSM11P83369 ARL6IP4-215ENST00000539576 1684 ntTSL 517.94■□□□□ 0.469e-11■■□□□ 14
LSM11P83369 ARL6IP4-213ENST00000536073 562 ntTSL 216.74■□□□□ 0.279e-11■■□□□ 14
LSM11P83369 ARL6IP4-203ENST00000392433 1370 ntTSL 216.61■□□□□ 0.259e-11■■□□□ 14
LSM11P83369 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC18.93■□□□□ 0.621e-6■■□□□ 14
LSM11P83369 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.261e-6■■□□□ 14
LSM11P83369 TAF15-205ENST00000603777 2011 ntAPPRIS ALT2 TSL 5 BASIC14.72□□□□□ -0.051e-6■■□□□ 14
LSM11P83369 TTLL3-227ENST00000482269 882 ntTSL 215.82■□□□□ 0.129e-8■■□□□ 13.9
LSM11P83369 TTLL3-229ENST00000492440 1549 ntTSL 214.79□□□□□ -0.049e-8■■□□□ 13.9
LSM11P83369 TOP3B-206ENST00000436282 2890 ntTSL 214.05□□□□□ -0.163e-11■■□□□ 13.9
LSM11P83369 TOP3B-214ENST00000457270 2956 ntTSL 513.2□□□□□ -0.33e-11■■□□□ 13.9
LSM11P83369 FANCL-203ENST00000403295 1576 ntTSL 1 (best) BASIC8.18□□□□□ -1.14e-11■■□□□ 13.9
LSM11P83369 FANCL-201ENST00000233741 1683 ntAPPRIS P3 TSL 1 (best) BASIC8.05□□□□□ -1.124e-11■■□□□ 13.9
LSM11P83369 FANCL-202ENST00000402135 1698 ntAPPRIS ALT1 TSL 2 BASIC8.05□□□□□ -1.124e-11■■□□□ 13.9
LSM11P83369 EPB41-203ENST00000349460 3029 ntTSL 1 (best) BASIC9.86□□□□□ -0.832e-6■■□□□ 13.9
LSM11P83369 EPB41-207ENST00000373800 2853 ntTSL 1 (best) BASIC9.64□□□□□ -0.872e-6■■□□□ 13.9
LSM11P83369 EPB41-204ENST00000356093 5857 ntTSL 5 BASIC8.18□□□□□ -1.12e-6■■□□□ 13.9
LSM11P83369 EPB41-202ENST00000347529 2676 ntTSL 1 (best) BASIC8.16□□□□□ -1.12e-6■■□□□ 13.9
LSM11P83369 EPB41-206ENST00000373798 5933 ntAPPRIS P1 TSL 5 BASIC8.1□□□□□ -1.112e-6■■□□□ 13.9
LSM11P83369 EPB41-201ENST00000343067 5956 ntAPPRIS P1 TSL 5 BASIC7.21□□□□□ -1.262e-6■■□□□ 13.9
LSM11P83369 NRDC-201ENST00000352171 3691 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.191e-7■■□□□ 13.9
LSM11P83369 NRDC-202ENST00000354831 3895 ntAPPRIS P3 TSL 1 (best) BASIC12.8□□□□□ -0.361e-7■■□□□ 13.9
LSM11P83369 NRDC-214ENST00000544028 3819 ntTSL 5 BASIC12.48□□□□□ -0.411e-7■■□□□ 13.9
LSM11P83369 NRDC-210ENST00000485608 3149 ntTSL 26.71□□□□□ -1.341e-7■■□□□ 13.9
LSM11P83369 NRDC-213ENST00000539524 3417 ntAPPRIS ALT2 TSL 1 (best) BASIC5.88□□□□□ -1.471e-7■■□□□ 13.9
LSM11P83369 EPS8L2-211ENST00000527832 1597 ntTSL 219.12■□□□□ 0.654e-10■■□□□ 13.9
LSM11P83369 EPS8L2-220ENST00000531393 2304 ntTSL 1 (best)17.9■□□□□ 0.464e-10■■□□□ 13.9
LSM11P83369 EPS8L2-212ENST00000528770 2233 ntTSL 217.02■□□□□ 0.324e-10■■□□□ 13.9
LSM11P83369 EPS8L2-201ENST00000318562 3148 ntAPPRIS P2 TSL 1 (best) BASIC15.12■□□□□ 0.014e-10■■□□□ 13.9
LSM11P83369 EPS8L2-231ENST00000614442 3188 ntAPPRIS ALT2 TSL 5 BASIC15.06■□□□□ 04e-10■■□□□ 13.9
LSM11P83369 EPS8L2-223ENST00000533256 3266 ntAPPRIS P2 TSL 5 BASIC14.92□□□□□ -0.024e-10■■□□□ 13.9
LSM11P83369 EPS8L2-208ENST00000526909 3844 ntTSL 511.94□□□□□ -0.54e-10■■□□□ 13.9
LSM11P83369 BTAF1-201ENST00000265990 7250 ntAPPRIS P2 TSL 1 (best) BASIC10.28□□□□□ -0.764e-7■■□□□ 13.9
LSM11P83369 BTAF1-204ENST00000544642 6938 ntAPPRIS ALT1 TSL 5 BASIC3.92□□□□□ -1.784e-7■■□□□ 13.9
LSM11P83369 HEXDC-202ENST00000337014 2285 ntTSL 1 (best) BASIC21.62■■□□□ 1.059e-7■■□□□ 13.9
LSM11P83369 HEXDC-212ENST00000582429 1824 ntTSL 220.24■□□□□ 0.839e-7■■□□□ 13.9
LSM11P83369 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.49e-7■■□□□ 13.9
LSM11P83369 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC17.34■□□□□ 0.379e-7■■□□□ 13.9
LSM11P83369 HEXDC-204ENST00000578130 853 ntTSL 214.51□□□□□ -0.099e-7■■□□□ 13.9
LSM11P83369 RPL13-202ENST00000393099 2385 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.928e-11■■□□□ 13.9
LSM11P83369 RPL13-212ENST00000563749 2367 nt20.67■□□□□ 0.98e-11■■□□□ 13.9
LSM11P83369 RPL13-209ENST00000491523 698 ntTSL 319.99■□□□□ 0.798e-11■■□□□ 13.9
LSM11P83369 RPL13-208ENST00000487034 615 ntTSL 1 (best)19.66■□□□□ 0.748e-11■■□□□ 13.9
LSM11P83369 RPL13-203ENST00000399461 879 ntTSL 219.21■□□□□ 0.678e-11■■□□□ 13.9
LSM11P83369 RPL13-205ENST00000467736 528 ntTSL 314.54□□□□□ -0.088e-11■■□□□ 13.9
Retrieved 100 of 11,495 protein–RNA pairs in 71.5 ms