RNA–Protein interactions for RNA: ENST00000540447.5

YBX3-208, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 6,393 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-208ENST00000540447 MYT1Q01538 1121 aa14.8□□□□□ -0.04
YBX3-208ENST00000540447 PELP1Q8IZL8 1130 aaKnown RBP14.78□□□□□ -0.04
YBX3-208ENST00000540447 ERICH6Q7L0X2 663 aa14□□□□□ -0.17
YBX3-208ENST00000540447 CENPBP07199 599 aaPredicted RBP13.92□□□□□ -0.18
YBX3-208ENST00000540447 CCER1Q8TC90 406 aaPredicted RBP13.79□□□□□ -0.2
YBX3-208ENST00000540447 TTBK1Q5TCY1 1321 aaPredicted RBP13.78□□□□□ -0.2
YBX3-208ENST00000540447 PCGF6Q9BYE7 350 aa13.65□□□□□ -0.22
YBX3-208ENST00000540447 ZEB1P37275 1124 aaPredicted RBP13.56□□□□□ -0.24
YBX3-208ENST00000540447 SUPT5HO00267 1087 aaKnown RBP13.52□□□□□ -0.24
YBX3-208ENST00000540447 YTHDC1Q96MU7 727 aaKnown RBP13.37□□□□□ -0.27
YBX3-208ENST00000540447 NEFLP07196 543 aa13.35□□□□□ -0.27
YBX3-208ENST00000540447 HRCP23327 699 aa13.34□□□□□ -0.27
YBX3-208ENST00000540447 DCAF8L2P0C7V8 631 aa13.33□□□□□ -0.28
YBX3-208ENST00000540447 EHMT2Q96KQ7 1210 aa13.2□□□□□ -0.3
YBX3-208ENST00000540447 RTL5Q5HYW3 569 aaPredicted RBP13.09□□□□□ -0.31
YBX3-208ENST00000540447 PPARGC1BQ86YN6 1023 aaKnown RBP13.01□□□□□ -0.33
YBX3-208ENST00000540447 DAXXQ9UER7 740 aaPredicted RBP13.01□□□□□ -0.33
YBX3-208ENST00000540447 GTF3C3Q9Y5Q9 886 aa12.98□□□□□ -0.33
YBX3-208ENST00000540447 APLP2Q06481 763 aa12.98□□□□□ -0.33
YBX3-208ENST00000540447 SHROOM4Q9ULL8 1493 aa12.91□□□□□ -0.34
YBX3-208ENST00000540447 EIF5BO60841 1220 aaKnown RBP12.88□□□□□ -0.35
YBX3-208ENST00000540447 TRIM26Q12899 539 aaPredicted RBP12.87□□□□□ -0.35
YBX3-208ENST00000540447 GLIPR1L2Q4G1C9 344 aa12.87□□□□□ -0.35
YBX3-208ENST00000540447 FAM9AQ8IZU1 332 aaPredicted RBP12.79□□□□□ -0.36
YBX3-208ENST00000540447 DIEXFQ68CQ4 756 aaKnown RBP12.76□□□□□ -0.37
YBX3-208ENST00000540447 ACIN1Q9UKV3 1341 aaKnown RBP12.76□□□□□ -0.37
YBX3-208ENST00000540447 ZNF316A6NFI3 1004 aaPredicted RBP12.73□□□□□ -0.37
YBX3-208ENST00000540447 MYT1LQ9UL68 1186 aa12.65□□□□□ -0.38
YBX3-208ENST00000540447 BCANQ96GW7 911 aa12.64□□□□□ -0.39
YBX3-208ENST00000540447 BCL11AQ9H165 835 aa12.61□□□□□ -0.39
YBX3-208ENST00000540447 CDK11AQ9UQ88 783 aaPredicted RBP12.61□□□□□ -0.39
YBX3-208ENST00000540447 SCAF1Q9H7N4 1312 aaKnown RBP12.57□□□□□ -0.4
YBX3-208ENST00000540447 ANP32EQ9BTT0 268 aa12.48□□□□□ -0.41
YBX3-208ENST00000540447 ANP32AP39687 249 aaKnown RBP12.43□□□□□ -0.42
YBX3-208ENST00000540447 TRIM41Q8WV44 630 aa12.43□□□□□ -0.42
YBX3-208ENST00000540447 CLSPNQ9HAW4 1339 aa12.42□□□□□ -0.42
YBX3-208ENST00000540447 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.39□□□□□ -0.43
YBX3-208ENST00000540447 NEUROD1Q13562 356 aa12.37□□□□□ -0.43
YBX3-208ENST00000540447 NBR1Q14596 966 aa12.35□□□□□ -0.43
YBX3-208ENST00000540447 RANGAP1P46060 587 aaPredicted RBP12.33□□□□□ -0.44
YBX3-208ENST00000540447 UBTFP17480 764 aaKnown RBP12.26□□□□□ -0.45
YBX3-208ENST00000540447 LOC105371045A0A1W2PR82 267 aa12.25□□□□□ -0.45
YBX3-208ENST00000540447 NPM2Q86SE8 214 aaKnown RBP12.24□□□□□ -0.45
YBX3-208ENST00000540447 FKBP8Q14318 412 aa12.24□□□□□ -0.45
YBX3-208ENST00000540447 ANP32BQ92688 251 aaKnown RBP12.22□□□□□ -0.45
YBX3-208ENST00000540447 POLR3GLQ9BT43 218 aa12.21□□□□□ -0.45
YBX3-208ENST00000540447 HNRNPUL2Q1KMD3 747 aaKnown RBP12.2□□□□□ -0.46
YBX3-208ENST00000540447 ZBTB47Q9UFB7 747 aaPredicted RBP12.19□□□□□ -0.46
YBX3-208ENST00000540447 TNNT2P45379 298 aaPredicted RBP12.19□□□□□ -0.46
YBX3-208ENST00000540447 CNGB1Q14028 1251 aaPredicted RBP12.18□□□□□ -0.46
YBX3-208ENST00000540447 RTN4Q9NQC3 1192 aaKnown RBP12.18□□□□□ -0.46
YBX3-208ENST00000540447 ATP1B4Q9UN42 357 aaPredicted RBP12.15□□□□□ -0.46
YBX3-208ENST00000540447 NISCHQ9Y2I1 1504 aa12.14□□□□□ -0.47
YBX3-208ENST00000540447 ANP32CO43423 234 aa12.14□□□□□ -0.47
YBX3-208ENST00000540447 CHIC1Q5VXU3 224 aa12.11□□□□□ -0.47
YBX3-208ENST00000540447 CDK11BP21127 795 aaKnown RBP12.08□□□□□ -0.48
YBX3-208ENST00000540447 ERICH6BQ5W0A0 696 aa12.08□□□□□ -0.48
YBX3-208ENST00000540447 ITGAEP38570 1179 aa12.07□□□□□ -0.48
YBX3-208ENST00000540447 NAP1L5Q96NT1 182 aaPredicted RBP12.05□□□□□ -0.48
YBX3-208ENST00000540447 ARXQ96QS3 562 aa12.04□□□□□ -0.48
YBX3-208ENST00000540447 DEKP35659 375 aaKnown RBP12.03□□□□□ -0.48
YBX3-208ENST00000540447 NEFMP07197 916 aa12.02□□□□□ -0.48
YBX3-208ENST00000540447 PRKCSHP14314 528 aaPredicted RBP12.02□□□□□ -0.48
YBX3-208ENST00000540447 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.01□□□□□ -0.49
YBX3-208ENST00000540447 CSRNP3Q8WYN3 585 aa12.01□□□□□ -0.49
YBX3-208ENST00000540447 NCLP19338 710 aaKnown RBP11.97□□□□□ -0.49
YBX3-208ENST00000540447 TRIM44Q96DX7 344 aaPredicted RBP11.96□□□□□ -0.49
YBX3-208ENST00000540447 SLC24A1O60721 1099 aa11.93□□□□□ -0.5
YBX3-208ENST00000540447 AMER1Q5JTC6 1135 aaPredicted RBP11.92□□□□□ -0.5
YBX3-208ENST00000540447 HSP90AA1P07900 732 aaKnown RBP11.89□□□□□ -0.51
YBX3-208ENST00000540447 CCDC136Q96JN2 1154 aa11.88□□□□□ -0.51
YBX3-208ENST00000540447 PPM1GO15355 546 aaPredicted RBP11.88□□□□□ -0.51
YBX3-208ENST00000540447 UPF2Q9HAU5 1272 aaKnown RBP11.88□□□□□ -0.51
YBX3-208ENST00000540447 NOP58Q9Y2X3 529 aaKnown RBP11.87□□□□□ -0.51
YBX3-208ENST00000540447 DDRGK1Q96HY6 314 aa11.86□□□□□ -0.51
YBX3-208ENST00000540447 MIER1Q8N108 512 aa11.85□□□□□ -0.51
YBX3-208ENST00000540447 CANXP27824 592 aaKnown RBP11.84□□□□□ -0.51
YBX3-208ENST00000540447 HNRNPUQ00839 825 aaKnown RBP eCLIP11.83□□□□□ -0.52
YBX3-208ENST00000540447 VSIG10Q8N0Z9 540 aa11.82□□□□□ -0.52
YBX3-208ENST00000540447 PODXL2Q9NZ53 605 aa11.81□□□□□ -0.52
YBX3-208ENST00000540447 SUPT16HQ9Y5B9 1047 aaKnown RBP11.8□□□□□ -0.52
YBX3-208ENST00000540447 IRX6P78412 446 aaPredicted RBP11.79□□□□□ -0.52
YBX3-208ENST00000540447 TRIM52Q96A61 297 aa11.78□□□□□ -0.52
YBX3-208ENST00000540447 LAS1LQ9Y4W2 734 aaKnown RBP11.78□□□□□ -0.52
YBX3-208ENST00000540447 PKNOX2Q96KN3 472 aa11.77□□□□□ -0.52
YBX3-208ENST00000540447 RBM19Q9Y4C8 960 aaKnown RBP11.76□□□□□ -0.53
YBX3-208ENST00000540447 DNTTIP2Q5QJE6 756 aaKnown RBP11.75□□□□□ -0.53
YBX3-208ENST00000540447 ZNF326Q5BKZ1 582 aaKnown RBP11.74□□□□□ -0.53
YBX3-208ENST00000540447 ARID4BQ4LE39 1312 aaPredicted RBP11.73□□□□□ -0.53
YBX3-208ENST00000540447 BECN1Q14457 450 aa11.72□□□□□ -0.53
YBX3-208ENST00000540447 HSP90AA2PQ14568 343 aaPredicted RBP11.71□□□□□ -0.53
YBX3-208ENST00000540447 RSPH6AQ9H0K4 717 aa11.71□□□□□ -0.54
YBX3-208ENST00000540447 SLC4A1APQ9BWU0 796 aaKnown RBP11.71□□□□□ -0.54
YBX3-208ENST00000540447 A0A0U1RQG5 324 aaPredicted RBP11.7□□□□□ -0.54
YBX3-208ENST00000540447 DCAF1Q9Y4B6 1507 aa11.7□□□□□ -0.54
YBX3-208ENST00000540447 PTMAP06454 111 aaKnown RBP11.69□□□□□ -0.54
YBX3-208ENST00000540447 TSHZ2Q9NRE2 1034 aa11.68□□□□□ -0.54
YBX3-208ENST00000540447 DDX10Q13206 875 aaKnown RBP11.68□□□□□ -0.54
YBX3-208ENST00000540447 PNNQ9H307 717 aaKnown RBP11.68□□□□□ -0.54
YBX3-208ENST00000540447 L1TD1Q5T7N2 865 aaKnown RBP11.67□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 56.2 ms