RNA–Protein interactions for RNA: ENST00000540447.5

YBX3-208, Transcript of Y-box binding protein 3, human

TSL 2

Gene YBX3, Length 6,393 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
YBX3-208	ENST00000540447	MYT1	Q01538	1121 aa		14.8	□□□□□ -0.04
YBX3-208	ENST00000540447	PELP1	Q8IZL8	1130 aa	Known RBP	14.78	□□□□□ -0.04
YBX3-208	ENST00000540447	ERICH6	Q7L0X2	663 aa		14	□□□□□ -0.17
YBX3-208	ENST00000540447	CENPB	P07199	599 aa	Predicted RBP	13.92	□□□□□ -0.18
YBX3-208	ENST00000540447	CCER1	Q8TC90	406 aa	Predicted RBP	13.79	□□□□□ -0.2
YBX3-208	ENST00000540447	TTBK1	Q5TCY1	1321 aa	Predicted RBP	13.78	□□□□□ -0.2
YBX3-208	ENST00000540447	PCGF6	Q9BYE7	350 aa		13.65	□□□□□ -0.22
YBX3-208	ENST00000540447	ZEB1	P37275	1124 aa	Predicted RBP	13.56	□□□□□ -0.24
YBX3-208	ENST00000540447	SUPT5H	O00267	1087 aa	Known RBP	13.52	□□□□□ -0.24
YBX3-208	ENST00000540447	YTHDC1	Q96MU7	727 aa	Known RBP	13.37	□□□□□ -0.27
YBX3-208	ENST00000540447	NEFL	P07196	543 aa		13.35	□□□□□ -0.27
YBX3-208	ENST00000540447	HRC	P23327	699 aa		13.34	□□□□□ -0.27
YBX3-208	ENST00000540447	DCAF8L2	P0C7V8	631 aa		13.33	□□□□□ -0.28
YBX3-208	ENST00000540447	EHMT2	Q96KQ7	1210 aa		13.2	□□□□□ -0.3
YBX3-208	ENST00000540447	RTL5	Q5HYW3	569 aa	Predicted RBP	13.09	□□□□□ -0.31
YBX3-208	ENST00000540447	PPARGC1B	Q86YN6	1023 aa	Known RBP	13.01	□□□□□ -0.33
YBX3-208	ENST00000540447	DAXX	Q9UER7	740 aa	Predicted RBP	13.01	□□□□□ -0.33
YBX3-208	ENST00000540447	GTF3C3	Q9Y5Q9	886 aa		12.98	□□□□□ -0.33
YBX3-208	ENST00000540447	APLP2	Q06481	763 aa		12.98	□□□□□ -0.33
YBX3-208	ENST00000540447	SHROOM4	Q9ULL8	1493 aa		12.91	□□□□□ -0.34
YBX3-208	ENST00000540447	EIF5B	O60841	1220 aa	Known RBP	12.88	□□□□□ -0.35
YBX3-208	ENST00000540447	TRIM26	Q12899	539 aa	Predicted RBP	12.87	□□□□□ -0.35
YBX3-208	ENST00000540447	GLIPR1L2	Q4G1C9	344 aa		12.87	□□□□□ -0.35
YBX3-208	ENST00000540447	FAM9A	Q8IZU1	332 aa	Predicted RBP	12.79	□□□□□ -0.36
YBX3-208	ENST00000540447	DIEXF	Q68CQ4	756 aa	Known RBP	12.76	□□□□□ -0.37
YBX3-208	ENST00000540447	ACIN1	Q9UKV3	1341 aa	Known RBP	12.76	□□□□□ -0.37
YBX3-208	ENST00000540447	ZNF316	A6NFI3	1004 aa	Predicted RBP	12.73	□□□□□ -0.37
YBX3-208	ENST00000540447	MYT1L	Q9UL68	1186 aa		12.65	□□□□□ -0.38
YBX3-208	ENST00000540447	BCAN	Q96GW7	911 aa		12.64	□□□□□ -0.39
YBX3-208	ENST00000540447	BCL11A	Q9H165	835 aa		12.61	□□□□□ -0.39
YBX3-208	ENST00000540447	CDK11A	Q9UQ88	783 aa	Predicted RBP	12.61	□□□□□ -0.39
YBX3-208	ENST00000540447	SCAF1	Q9H7N4	1312 aa	Known RBP	12.57	□□□□□ -0.4
YBX3-208	ENST00000540447	ANP32E	Q9BTT0	268 aa		12.48	□□□□□ -0.41
YBX3-208	ENST00000540447	ANP32A	P39687	249 aa	Known RBP	12.43	□□□□□ -0.42
YBX3-208	ENST00000540447	TRIM41	Q8WV44	630 aa		12.43	□□□□□ -0.42
YBX3-208	ENST00000540447	CLSPN	Q9HAW4	1339 aa		12.42	□□□□□ -0.42
YBX3-208	ENST00000540447	HNRNPUL2-BSCL2	H3BQZ7	746 aa	Predicted RBP	12.39	□□□□□ -0.43
YBX3-208	ENST00000540447	NEUROD1	Q13562	356 aa		12.37	□□□□□ -0.43
YBX3-208	ENST00000540447	NBR1	Q14596	966 aa		12.35	□□□□□ -0.43
YBX3-208	ENST00000540447	RANGAP1	P46060	587 aa	Predicted RBP	12.33	□□□□□ -0.44
YBX3-208	ENST00000540447	UBTF	P17480	764 aa	Known RBP	12.26	□□□□□ -0.45
YBX3-208	ENST00000540447	LOC105371045	A0A1W2PR82	267 aa		12.25	□□□□□ -0.45
YBX3-208	ENST00000540447	NPM2	Q86SE8	214 aa	Known RBP	12.24	□□□□□ -0.45
YBX3-208	ENST00000540447	FKBP8	Q14318	412 aa		12.24	□□□□□ -0.45
YBX3-208	ENST00000540447	ANP32B	Q92688	251 aa	Known RBP	12.22	□□□□□ -0.45
YBX3-208	ENST00000540447	POLR3GL	Q9BT43	218 aa		12.21	□□□□□ -0.45
YBX3-208	ENST00000540447	HNRNPUL2	Q1KMD3	747 aa	Known RBP	12.2	□□□□□ -0.46
YBX3-208	ENST00000540447	ZBTB47	Q9UFB7	747 aa	Predicted RBP	12.19	□□□□□ -0.46
YBX3-208	ENST00000540447	TNNT2	P45379	298 aa	Predicted RBP	12.19	□□□□□ -0.46
YBX3-208	ENST00000540447	CNGB1	Q14028	1251 aa	Predicted RBP	12.18	□□□□□ -0.46
YBX3-208	ENST00000540447	RTN4	Q9NQC3	1192 aa	Known RBP	12.18	□□□□□ -0.46
YBX3-208	ENST00000540447	ATP1B4	Q9UN42	357 aa	Predicted RBP	12.15	□□□□□ -0.46
YBX3-208	ENST00000540447	NISCH	Q9Y2I1	1504 aa		12.14	□□□□□ -0.47
YBX3-208	ENST00000540447	ANP32C	O43423	234 aa		12.14	□□□□□ -0.47
YBX3-208	ENST00000540447	CHIC1	Q5VXU3	224 aa		12.11	□□□□□ -0.47
YBX3-208	ENST00000540447	CDK11B	P21127	795 aa	Known RBP	12.08	□□□□□ -0.48
YBX3-208	ENST00000540447	ERICH6B	Q5W0A0	696 aa		12.08	□□□□□ -0.48
YBX3-208	ENST00000540447	ITGAE	P38570	1179 aa		12.07	□□□□□ -0.48
YBX3-208	ENST00000540447	NAP1L5	Q96NT1	182 aa	Predicted RBP	12.05	□□□□□ -0.48
YBX3-208	ENST00000540447	ARX	Q96QS3	562 aa		12.04	□□□□□ -0.48
YBX3-208	ENST00000540447	DEK	P35659	375 aa	Known RBP	12.03	□□□□□ -0.48
YBX3-208	ENST00000540447	NEFM	P07197	916 aa		12.02	□□□□□ -0.48
YBX3-208	ENST00000540447	PRKCSH	P14314	528 aa	Predicted RBP	12.02	□□□□□ -0.48
YBX3-208	ENST00000540447	ZBTB4	Q9P1Z0	1013 aa	Predicted RBP	12.01	□□□□□ -0.49
YBX3-208	ENST00000540447	CSRNP3	Q8WYN3	585 aa		12.01	□□□□□ -0.49
YBX3-208	ENST00000540447	NCL	P19338	710 aa	Known RBP	11.97	□□□□□ -0.49
YBX3-208	ENST00000540447	TRIM44	Q96DX7	344 aa	Predicted RBP	11.96	□□□□□ -0.49
YBX3-208	ENST00000540447	SLC24A1	O60721	1099 aa		11.93	□□□□□ -0.5
YBX3-208	ENST00000540447	AMER1	Q5JTC6	1135 aa	Predicted RBP	11.92	□□□□□ -0.5
YBX3-208	ENST00000540447	HSP90AA1	P07900	732 aa	Known RBP	11.89	□□□□□ -0.51
YBX3-208	ENST00000540447	CCDC136	Q96JN2	1154 aa		11.88	□□□□□ -0.51
YBX3-208	ENST00000540447	PPM1G	O15355	546 aa	Predicted RBP	11.88	□□□□□ -0.51
YBX3-208	ENST00000540447	UPF2	Q9HAU5	1272 aa	Known RBP	11.88	□□□□□ -0.51
YBX3-208	ENST00000540447	NOP58	Q9Y2X3	529 aa	Known RBP	11.87	□□□□□ -0.51
YBX3-208	ENST00000540447	DDRGK1	Q96HY6	314 aa		11.86	□□□□□ -0.51
YBX3-208	ENST00000540447	MIER1	Q8N108	512 aa		11.85	□□□□□ -0.51
YBX3-208	ENST00000540447	CANX	P27824	592 aa	Known RBP	11.84	□□□□□ -0.51
YBX3-208	ENST00000540447	HNRNPU	Q00839	825 aa	Known RBP eCLIP	11.83	□□□□□ -0.52
YBX3-208	ENST00000540447	VSIG10	Q8N0Z9	540 aa		11.82	□□□□□ -0.52
YBX3-208	ENST00000540447	PODXL2	Q9NZ53	605 aa		11.81	□□□□□ -0.52
YBX3-208	ENST00000540447	SUPT16H	Q9Y5B9	1047 aa	Known RBP	11.8	□□□□□ -0.52
YBX3-208	ENST00000540447	IRX6	P78412	446 aa	Predicted RBP	11.79	□□□□□ -0.52
YBX3-208	ENST00000540447	TRIM52	Q96A61	297 aa		11.78	□□□□□ -0.52
YBX3-208	ENST00000540447	LAS1L	Q9Y4W2	734 aa	Known RBP	11.78	□□□□□ -0.52
YBX3-208	ENST00000540447	PKNOX2	Q96KN3	472 aa		11.77	□□□□□ -0.52
YBX3-208	ENST00000540447	RBM19	Q9Y4C8	960 aa	Known RBP	11.76	□□□□□ -0.53
YBX3-208	ENST00000540447	DNTTIP2	Q5QJE6	756 aa	Known RBP	11.75	□□□□□ -0.53
YBX3-208	ENST00000540447	ZNF326	Q5BKZ1	582 aa	Known RBP	11.74	□□□□□ -0.53
YBX3-208	ENST00000540447	ARID4B	Q4LE39	1312 aa	Predicted RBP	11.73	□□□□□ -0.53
YBX3-208	ENST00000540447	BECN1	Q14457	450 aa		11.72	□□□□□ -0.53
YBX3-208	ENST00000540447	HSP90AA2P	Q14568	343 aa	Predicted RBP	11.71	□□□□□ -0.53
YBX3-208	ENST00000540447	RSPH6A	Q9H0K4	717 aa		11.71	□□□□□ -0.54
YBX3-208	ENST00000540447	SLC4A1AP	Q9BWU0	796 aa	Known RBP	11.71	□□□□□ -0.54
YBX3-208	ENST00000540447		A0A0U1RQG5	324 aa	Predicted RBP	11.7	□□□□□ -0.54
YBX3-208	ENST00000540447	DCAF1	Q9Y4B6	1507 aa		11.7	□□□□□ -0.54
YBX3-208	ENST00000540447	PTMA	P06454	111 aa	Known RBP	11.69	□□□□□ -0.54
YBX3-208	ENST00000540447	TSHZ2	Q9NRE2	1034 aa		11.68	□□□□□ -0.54
YBX3-208	ENST00000540447	DDX10	Q13206	875 aa	Known RBP	11.68	□□□□□ -0.54
YBX3-208	ENST00000540447	PNN	Q9H307	717 aa	Known RBP	11.68	□□□□□ -0.54
YBX3-208	ENST00000540447	L1TD1	Q5T7N2	865 aa	Known RBP	11.67	□□□□□ -0.54

Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms