RNA–Protein interactions for RNA: ENST00000477052.1

VARS2-208, Transcript of valyl-tRNA synthetase 2, mitochondrial, humanhuman

TSL 3

Gene VARS2, Length 552 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS2-208ENST00000477052 NISCHQ9Y2I1 1504 aa29.16■■■□□ 2.26
VARS2-208ENST00000477052 ABCC9O60706 1549 aa26.21■■□□□ 1.79
VARS2-208ENST00000477052 CCDC180Q9P1Z9 1646 aa26.06■■□□□ 1.76
VARS2-208ENST00000477052 RB1CC1Q8TDY2 1594 aa24.83■■□□□ 1.57
VARS2-208ENST00000477052 DCAF8L2P0C7V8 631 aa24.77■■□□□ 1.56
VARS2-208ENST00000477052 NACADO15069 1562 aa24.64■■□□□ 1.54
VARS2-208ENST00000477052 DNAJC5BQ9UF47 199 aa24.61■■□□□ 1.53
VARS2-208ENST00000477052 PABPN1Q86U42 306 aaKnown RBP eCLIP24.47■■□□□ 1.511e-7■■■■□ 19.6
VARS2-208ENST00000477052 UNC13AQ9UPW8 1703 aa24.33■■□□□ 1.49
VARS2-208ENST00000477052 MYO15BQ96JP2 1530 aa24.25■■□□□ 1.47
VARS2-208ENST00000477052 BICRAQ9NZM4 1560 aa24.17■■□□□ 1.46
VARS2-208ENST00000477052 ZCCHC6Q5VYS8 1495 aaKnown RBP24.16■■□□□ 1.46
VARS2-208ENST00000477052 DCAF1Q9Y4B6 1507 aa23.98■■□□□ 1.43
VARS2-208ENST00000477052 SCRIBQ14160 1630 aa23.92■■□□□ 1.42
VARS2-208ENST00000477052 SHROOM4Q9ULL8 1493 aa23.66■■□□□ 1.38
VARS2-208ENST00000477052 CC2D2AQ9P2K1 1620 aa23.62■■□□□ 1.37
VARS2-208ENST00000477052 EIF4G1Q04637 1599 aaKnown RBP23.56■■□□□ 1.36
VARS2-208ENST00000477052 CECR2Q9BXF3 1484 aa23.55■■□□□ 1.36
VARS2-208ENST00000477052 NCAPD3P42695 1498 aa22.78■■□□□ 1.24
VARS2-208ENST00000477052 ATAD2BQ9ULI0 1458 aa22.76■■□□□ 1.23
VARS2-208ENST00000477052 SMARCA4P51532 1647 aa22.74■■□□□ 1.23
VARS2-208ENST00000477052 SMARCA2P51531 1590 aa22.64■■□□□ 1.22
VARS2-208ENST00000477052 BAZ1AQ9NRL2 1556 aaPredicted RBP22.59■■□□□ 1.21
VARS2-208ENST00000477052 HMGXB3Q12766 1538 aa22.59■■□□□ 1.21
VARS2-208ENST00000477052 ERCC6Q03468 1493 aa22.58■■□□□ 1.2
VARS2-208ENST00000477052 NESP48681 1621 aa22.55■■□□□ 1.2
VARS2-208ENST00000477052 BAZ1BQ9UIG0 1483 aaKnown RBP22.54■■□□□ 1.2
VARS2-208ENST00000477052 MROH2BQ7Z745 1585 aa22.53■■□□□ 1.2
VARS2-208ENST00000477052 DNAJC5Q9H3Z4 198 aa22.46■■□□□ 1.19
VARS2-208ENST00000477052 PEG3Q9GZU2 1588 aa22.45■■□□□ 1.18
VARS2-208ENST00000477052 CUX2O14529 1486 aa22.43■■□□□ 1.18
VARS2-208ENST00000477052 WIZO95785 1651 aa22.27■■□□□ 1.16
VARS2-208ENST00000477052 LAMC3Q9Y6N6 1575 aa22.24■■□□□ 1.15
VARS2-208ENST00000477052 THOC2Q8NI27 1593 aaKnown RBP22.21■■□□□ 1.15
VARS2-208ENST00000477052 KIF21AQ7Z4S6 1674 aa22.2■■□□□ 1.14
VARS2-208ENST00000477052 PDS5BQ9NTI5 1447 aa22.13■■□□□ 1.13
VARS2-208ENST00000477052 CADPSQ9ULU8 1353 aa22.12■■□□□ 1.13
VARS2-208ENST00000477052 RSF1Q96T23 1441 aaPredicted RBP22.06■■□□□ 1.12
VARS2-208ENST00000477052 MRC2Q9UBG0 1479 aa21.96■■□□□ 1.11
VARS2-208ENST00000477052 TOP2AP11388 1531 aaKnown RBP21.92■■□□□ 1.1
VARS2-208ENST00000477052 FANCD2Q9BXW9 1451 aa21.9■■□□□ 1.1
VARS2-208ENST00000477052 WDR62O43379 1518 aa21.89■■□□□ 1.09
VARS2-208ENST00000477052 CEP164Q9UPV0 1460 aa21.89■■□□□ 1.09
VARS2-208ENST00000477052 CFTRP13569 1480 aa21.86■■□□□ 1.09
VARS2-208ENST00000477052 URB2Q14146 1524 aaKnown RBP21.74■■□□□ 1.07
VARS2-208ENST00000477052 CCDC88BA6NC98 1476 aa21.73■■□□□ 1.07
VARS2-208ENST00000477052 TRIM41Q8WV44 630 aa21.61■■□□□ 1.05
VARS2-208ENST00000477052 PRDM2Q13029 1718 aa21.6■■□□□ 1.05
VARS2-208ENST00000477052 ZNF608Q9ULD9 1512 aaPredicted RBP21.5■■□□□ 1.03
VARS2-208ENST00000477052 OSCARQ8IYS5 282 aa21.49■■□□□ 1.03
VARS2-208ENST00000477052 TOPBP1Q92547 1522 aa21.48■■□□□ 1.03
VARS2-208ENST00000477052 IFT140Q96RY7 1462 aa21.43■■□□□ 1.02
VARS2-208ENST00000477052 DNMBPQ6XZF7 1577 aa21.37■■□□□ 1.01
VARS2-208ENST00000477052 ABCC8Q09428 1581 aa21.33■■□□□ 1.01
VARS2-208ENST00000477052 EIF4G3O43432 1585 aaKnown RBP21.31■■□□□ 1
VARS2-208ENST00000477052 AQRO60306 1485 aaKnown RBP eCLIP21.31■■□□□ 1
VARS2-208ENST00000477052 POLA1P09884 1462 aaPredicted RBP21.27■■□□□ 1
VARS2-208ENST00000477052 TARBP1Q13395 1621 aaKnown RBP21.27■■□□□ 1
VARS2-208ENST00000477052 RAD54L2Q9Y4B4 1467 aa21.26■□□□□ 0.99
VARS2-208ENST00000477052 SUPT5HO00267 1087 aaKnown RBP21.24■□□□□ 0.99
VARS2-208ENST00000477052 RIMBP3CA6NJZ7 1639 aa21.22■□□□□ 0.99
VARS2-208ENST00000477052 RIMBP3BA6NNM3 1639 aa21.22■□□□□ 0.99
VARS2-208ENST00000477052 RIMBP3Q9UFD9 1639 aa21.22■□□□□ 0.99
VARS2-208ENST00000477052 FBLN2P98095 1184 aa21.2■□□□□ 0.98
VARS2-208ENST00000477052 TDRD9Q8NDG6 1382 aaKnown RBP21.2■□□□□ 0.98
VARS2-208ENST00000477052 SOGA1O94964 1423 aa21.19■□□□□ 0.98
VARS2-208ENST00000477052 CHD1O14646 1710 aa21.17■□□□□ 0.98
VARS2-208ENST00000477052 FGD5Q6ZNL6 1462 aa21.16■□□□□ 0.98
VARS2-208ENST00000477052 CUX1P39880 1505 aa21.15■□□□□ 0.98
VARS2-208ENST00000477052 ARHGEF11O15085 1522 aa21.14■□□□□ 0.98
VARS2-208ENST00000477052 CYB5RLQ6IPT4 315 aa21.06■□□□□ 0.96
VARS2-208ENST00000477052 SNAPC4Q5SXM2 1469 aa21.06■□□□□ 0.96
VARS2-208ENST00000477052 CHMP7Q8WUX9 453 aaPredicted RBP20.98■□□□□ 0.95
VARS2-208ENST00000477052 ARAP1Q96P48 1450 aa20.96■□□□□ 0.95
VARS2-208ENST00000477052 GRIN2BQ13224 1484 aa20.95■□□□□ 0.94
VARS2-208ENST00000477052 WDR97A6NE52 1622 aa20.95■□□□□ 0.94
VARS2-208ENST00000477052 MAGI1Q96QZ7 1491 aaPredicted RBP20.92■□□□□ 0.94
VARS2-208ENST00000477052 GAPVD1Q14C86 1478 aa20.91■□□□□ 0.94
VARS2-208ENST00000477052 PBRM1Q86U86 1689 aa20.89■□□□□ 0.94
VARS2-208ENST00000477052 CLASP1Q7Z460 1538 aa20.88■□□□□ 0.93
VARS2-208ENST00000477052 SYNJ2O15056 1496 aa20.88■□□□□ 0.93
VARS2-208ENST00000477052 ABCA10Q8WWZ4 1543 aa20.86■□□□□ 0.93
VARS2-208ENST00000477052 SYNJ1O43426 1573 aa20.85■□□□□ 0.93
VARS2-208ENST00000477052 ABCA5Q8WWZ7 1642 aa20.84■□□□□ 0.93
VARS2-208ENST00000477052 TRHP20396 242 aaPredicted RBP20.82■□□□□ 0.92
VARS2-208ENST00000477052 WRNQ14191 1432 aaPredicted RBP eCLIP20.8■□□□□ 0.92
VARS2-208ENST00000477052 TOP2BQ02880 1626 aa20.77■□□□□ 0.92
VARS2-208ENST00000477052 BIVM-ERCC5R4GMW8 1640 aa20.76■□□□□ 0.91
VARS2-208ENST00000477052 GRIN2AQ12879 1464 aa20.7■□□□□ 0.9
VARS2-208ENST00000477052 ADAMTS12P58397 1594 aa20.69■□□□□ 0.9
VARS2-208ENST00000477052 ERCC6L2Q5T890 1561 aa20.68■□□□□ 0.9
VARS2-208ENST00000477052 CEP170Q5SW79 1584 aa20.66■□□□□ 0.9
VARS2-208ENST00000477052 FHAD1B1AJZ9 1412 aa20.62■□□□□ 0.89
VARS2-208ENST00000477052 NUP160Q12769 1436 aa20.61■□□□□ 0.89
VARS2-208ENST00000477052 ERICH3Q5RHP9 1530 aa20.58■□□□□ 0.88
VARS2-208ENST00000477052 SHROOM2Q13796 1616 aa20.5■□□□□ 0.87
VARS2-208ENST00000477052 PRG4Q92954 1404 aaPredicted RBP20.46■□□□□ 0.87
VARS2-208ENST00000477052 JPH4Q96JJ6 628 aa20.45■□□□□ 0.86
VARS2-208ENST00000477052 IGF1RP08069 1367 aa20.41■□□□□ 0.86
VARS2-208ENST00000477052 RUSC2Q8N2Y8 1516 aa20.39■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 109.4 ms