Protein–RNA interactions for Protein: Q8NHQ9

DDX55, ATP-dependent RNA helicase DDX55, humanhuman

Known RBP eCLIP

Length 600 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55Q8NHQ9 TNRC18-205ENST00000430969 10562 ntAPPRIS P2 TSL 5 BASIC16.01■□□□□ 0.152e-6■■□□□ 14.4
DDX55Q8NHQ9 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC22.82■■□□□ 1.241e-17■■□□□ 14.4
DDX55Q8NHQ9 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.071e-17■■□□□ 14.4
DDX55Q8NHQ9 PMPCA-204ENST00000444897 2316 ntTSL 216.86■□□□□ 0.291e-17■■□□□ 14.4
DDX55Q8NHQ9 DNAJB1-201ENST00000254322 2264 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.123e-7■■□□□ 14.4
DDX55Q8NHQ9 ENTPD6-218ENST00000490187 1918 ntTSL 217.83■□□□□ 0.444e-7■■□□□ 14.4
DDX55Q8NHQ9 RRP1-202ENST00000471909 2544 ntTSL 1 (best)18.92■□□□□ 0.623e-7■■□□□ 14.3
DDX55Q8NHQ9 RRP1-207ENST00000497547 3022 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.343e-7■■□□□ 14.3
DDX55Q8NHQ9 RRP1-201ENST00000467112 3019 ntTSL 1 (best)15.36■□□□□ 0.053e-7■■□□□ 14.3
DDX55Q8NHQ9 CAPNS1-206ENST00000588815 1471 ntAPPRIS P2 TSL 1 (best) BASIC35.85■■■■□ 3.338e-20■■□□□ 14.3
DDX55Q8NHQ9 CAPNS1-217ENST00000629983 799 ntTSL 5 BASIC34.58■■■■□ 3.138e-20■■□□□ 14.3
DDX55Q8NHQ9 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC32.29■■■□□ 2.768e-20■■□□□ 14.3
DDX55Q8NHQ9 CAPNS1-201ENST00000246533 1918 ntAPPRIS P2 TSL 1 (best) BASIC30.55■■■□□ 2.488e-20■■□□□ 14.3
DDX55Q8NHQ9 CAPNS1-216ENST00000628306 1389 ntTSL 5 BASIC30.15■■■□□ 2.428e-20■■□□□ 14.3
DDX55Q8NHQ9 CAPNS1-204ENST00000587718 1558 ntAPPRIS ALT2 TSL 1 (best) BASIC29.69■■■□□ 2.348e-20■■□□□ 14.3
DDX55Q8NHQ9 CAPNS1-214ENST00000592483 431 ntTSL 528.91■■■□□ 2.228e-20■■□□□ 14.3
DDX55Q8NHQ9 CAPNS1-215ENST00000628018 1509 ntAPPRIS ALT2 TSL 5 BASIC28.64■■■□□ 2.188e-20■■□□□ 14.3
DDX55Q8NHQ9 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC27.71■■■□□ 2.038e-20■■□□□ 14.3
DDX55Q8NHQ9 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC25.94■■□□□ 1.748e-20■■□□□ 14.3
DDX55Q8NHQ9 CAPNS1-212ENST00000591041 812 ntTSL 325.72■■□□□ 1.718e-20■■□□□ 14.3
DDX55Q8NHQ9 APOE-203ENST00000434152 864 ntTSL 224.79■■□□□ 1.561e-31■■□□□ 14.3
DDX55Q8NHQ9 EML2-209ENST00000587152 2763 ntAPPRIS ALT2 TSL 2 BASIC24.57■■□□□ 1.523e-6■■□□□ 14.3
DDX55Q8NHQ9 EML2-227ENST00000592433 705 ntTSL 218.45■□□□□ 0.543e-6■■□□□ 14.3
DDX55Q8NHQ9 RAB5B-203ENST00000546810 589 ntTSL 216.53■□□□□ 0.247e-10■■□□□ 14.3
DDX55Q8NHQ9 GTF2F2-201ENST00000340473 2239 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.082e-7■■□□□ 14.3
DDX55Q8NHQ9 GGA3-220ENST00000613421 5156 ntTSL 214.81□□□□□ -0.047e-10■■□□□ 14.3
DDX55Q8NHQ9 RAB5B-211ENST00000628569 496 ntTSL 5 BASIC14.68□□□□□ -0.067e-10■■□□□ 14.3
DDX55Q8NHQ9 RAB5B-204ENST00000548068 596 ntTSL 414.14□□□□□ -0.157e-10■■□□□ 14.3
DDX55Q8NHQ9 GGA3-221ENST00000614198 3438 ntTSL 211.08□□□□□ -0.647e-10■■□□□ 14.3
DDX55Q8NHQ9 GGA3-201ENST00000537686 4069 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.697e-10■■□□□ 14.3
DDX55Q8NHQ9 TSC1-208ENST00000545250 8310 ntTSL 5 BASIC10.41□□□□□ -0.747e-10■■□□□ 14.3
DDX55Q8NHQ9 GGA3-202ENST00000538886 3766 ntTSL 1 (best) BASIC10.08□□□□□ -0.87e-10■■□□□ 14.3
DDX55Q8NHQ9 TSC1-207ENST00000493467 2219 ntTSL 1 (best)10.05□□□□□ -0.87e-10■■□□□ 14.3
DDX55Q8NHQ9 KAT6A-203ENST00000406337 9241 ntAPPRIS P3 TSL 5 BASIC9.81□□□□□ -0.847e-10■■□□□ 14.3
DDX55Q8NHQ9 GGA3-222ENST00000621217 4181 ntTSL 29.78□□□□□ -0.847e-10■■□□□ 14.3
DDX55Q8NHQ9 GGA3-223ENST00000621870 4034 ntTSL 1 (best)9.65□□□□□ -0.877e-10■■□□□ 14.3
DDX55Q8NHQ9 GART-201ENST00000361093 2149 ntTSL 1 (best) BASIC9.15□□□□□ -0.947e-10■■□□□ 14.3
DDX55Q8NHQ9 KAT6A-201ENST00000265713 9153 ntAPPRIS P3 TSL 1 (best) BASIC9.1□□□□□ -0.957e-10■■□□□ 14.3
DDX55Q8NHQ9 TSC1-201ENST00000298552 8604 ntAPPRIS P1 TSL 1 (best) BASIC8.65□□□□□ -1.037e-10■■□□□ 14.3
DDX55Q8NHQ9 TSC1-203ENST00000440111 8463 ntAPPRIS P1 TSL 1 (best) BASIC8.48□□□□□ -1.057e-10■■□□□ 14.3
DDX55Q8NHQ9 KAT6A-202ENST00000396930 9285 ntAPPRIS P3 TSL 5 BASIC8.12□□□□□ -1.117e-10■■□□□ 14.3
DDX55Q8NHQ9 GART-213ENST00000467575 922 ntTSL 37.26□□□□□ -1.257e-10■■□□□ 14.3
DDX55Q8NHQ9 RAB5B-209ENST00000551459 569 ntTSL 46.81□□□□□ -1.327e-10■■□□□ 14.3
DDX55Q8NHQ9 RAB5B-207ENST00000549915 494 ntTSL 44.02□□□□□ -1.777e-10■■□□□ 14.3
DDX55Q8NHQ9 GART-211ENST00000460305 389 ntTSL 1 (best)3.72□□□□□ -1.817e-10■■□□□ 14.3
DDX55Q8NHQ9 PAXX-205ENST00000483807 705 ntTSL 522.46■■□□□ 1.196e-7■■□□□ 14.3
DDX55Q8NHQ9 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.966e-7■■□□□ 14.3
DDX55Q8NHQ9 PAXX-208ENST00000498095 1077 ntTSL 520.09■□□□□ 0.816e-7■■□□□ 14.3
DDX55Q8NHQ9 PAXX-204ENST00000481187 794 ntTSL 319.74■□□□□ 0.756e-7■■□□□ 14.3
DDX55Q8NHQ9 PTK7-202ENST00000230419 4272 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.373e-8■■□□□ 14.3
DDX55Q8NHQ9 PTK7-216ENST00000489707 1935 ntTSL 1 (best)16.8■□□□□ 0.283e-8■■□□□ 14.3
DDX55Q8NHQ9 PTK7-208ENST00000470019 4016 ntTSL 515.64■□□□□ 0.093e-8■■□□□ 14.3
DDX55Q8NHQ9 PTK7-201ENST00000230418 3958 ntTSL 1 (best)15.25■□□□□ 0.033e-8■■□□□ 14.3
DDX55Q8NHQ9 PTK7-215ENST00000487673 5282 ntTSL 215.24■□□□□ 0.033e-8■■□□□ 14.3
DDX55Q8NHQ9 PTK7-205ENST00000352931 4023 ntTSL 1 (best) BASIC14.72□□□□□ -0.053e-8■■□□□ 14.3
DDX55Q8NHQ9 PTK7-203ENST00000345201 4071 ntTSL 1 (best) BASIC14.71□□□□□ -0.053e-8■■□□□ 14.3
DDX55Q8NHQ9 PTK7-204ENST00000349241 3801 ntTSL 1 (best) BASIC13.66□□□□□ -0.223e-8■■□□□ 14.3
DDX55Q8NHQ9 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC23.79■■□□□ 1.43e-6■■□□□ 14.3
DDX55Q8NHQ9 ESPN-214ENST00000633239 1494 ntTSL 522.02■■□□□ 1.123e-6■■□□□ 14.3
DDX55Q8NHQ9 ESPN-207ENST00000475228 813 ntTSL 521.33■■□□□ 1.013e-6■■□□□ 14.3
DDX55Q8NHQ9 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC21.03■□□□□ 0.963e-6■■□□□ 14.3
DDX55Q8NHQ9 ESPN-201ENST00000377828 3531 ntAPPRIS P2 TSL 1 (best) BASIC14.67□□□□□ -0.063e-6■■□□□ 14.3
DDX55Q8NHQ9 TNS1-201ENST00000171887 10331 ntAPPRIS P3 TSL 1 (best) BASIC10.49□□□□□ -0.733e-7■■□□□ 14.3
DDX55Q8NHQ9 VARS-215ENST00000375663 4312 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.493e-6■■□□□ 14.3
DDX55Q8NHQ9 LBR-201ENST00000272163 3745 ntAPPRIS P1 TSL 1 (best) BASIC9.79□□□□□ -0.845e-7■■□□□ 14.3
DDX55Q8NHQ9 LBR-202ENST00000338179 3812 ntAPPRIS P1 TSL 5 BASIC3.83□□□□□ -1.85e-7■■□□□ 14.3
DDX55Q8NHQ9 DNAJC3-202ENST00000602402 5591 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.228e-10■■□□□ 14.3
DDX55Q8NHQ9 DDX21-202ENST00000620315 4829 ntTSL 1 (best) BASIC15.28■□□□□ 0.043e-30■■□□□ 14.3
DDX55Q8NHQ9 DDX21-201ENST00000354185 4711 ntAPPRIS P1 TSL 1 (best) BASIC8.96□□□□□ -0.983e-30■■□□□ 14.3
DDX55Q8NHQ9 SETD2-204ENST00000431180 7555 ntTSL 26.48□□□□□ -1.372e-8■■□□□ 14.3
DDX55Q8NHQ9 SETD2-201ENST00000330022 8172 ntTSL 1 (best)6.42□□□□□ -1.382e-8■■□□□ 14.3
DDX55Q8NHQ9 PLOD2-201ENST00000282903 3732 ntAPPRIS P4 TSL 1 (best) BASIC14.24□□□□□ -0.131e-10■■□□□ 14.3
DDX55Q8NHQ9 PLOD2-202ENST00000360060 3665 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.141e-10■■□□□ 14.3
DDX55Q8NHQ9 PLOD2-204ENST00000461497 3043 ntTSL 2 BASIC4.3□□□□□ -1.721e-10■■□□□ 14.3
DDX55Q8NHQ9 TNFRSF12A-201ENST00000326577 1033 ntAPPRIS P1 TSL 1 (best) BASIC29.86■■■□□ 2.374e-7■■□□□ 14.3
DDX55Q8NHQ9 TNFRSF12A-203ENST00000571351 1678 ntTSL 223.96■■□□□ 1.434e-7■■□□□ 14.3
DDX55Q8NHQ9 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC23.8■■□□□ 1.44e-7■■□□□ 14.3
DDX55Q8NHQ9 TNFRSF12A-202ENST00000341627 881 ntTSL 1 (best) BASIC18.6■□□□□ 0.574e-7■■□□□ 14.3
DDX55Q8NHQ9 DNM2-204ENST00000408974 3013 ntAPPRIS ALT1 TSL 2 BASIC14.47□□□□□ -0.096e-17■■□□□ 14.3
DDX55Q8NHQ9 TMEM120A-214ENST00000493111 1456 ntAPPRIS P1 TSL 1 (best) BASIC29.4■■■□□ 2.34e-6■■□□□ 14.3
DDX55Q8NHQ9 TMEM120A-204ENST00000440632 1352 ntTSL 522.34■■□□□ 1.174e-6■■□□□ 14.3
DDX55Q8NHQ9 TMEM120A-203ENST00000439537 1161 ntTSL 1 (best) BASIC19.53■□□□□ 0.724e-6■■□□□ 14.3
DDX55Q8NHQ9 TMEM120A-210ENST00000484946 610 ntTSL 219.53■□□□□ 0.724e-6■■□□□ 14.3
DDX55Q8NHQ9 TMEM120A-213ENST00000490656 660 ntTSL 319.53■□□□□ 0.724e-6■■□□□ 14.3
DDX55Q8NHQ9 TMEM120A-201ENST00000417509 1444 ntTSL 2 BASIC19.34■□□□□ 0.694e-6■■□□□ 14.3
DDX55Q8NHQ9 TMEM120A-215ENST00000493251 641 ntTSL 317.76■□□□□ 0.434e-6■■□□□ 14.3
DDX55Q8NHQ9 TMEM120A-205ENST00000460127 408 ntTSL 316.26■□□□□ 0.194e-6■■□□□ 14.3
DDX55Q8NHQ9 CLUH-201ENST00000435359 5224 ntAPPRIS P2 TSL 5 BASIC19.73■□□□□ 0.751e-6■■□□□ 14.3
DDX55Q8NHQ9 CLUH-211ENST00000575014 4959 ntAPPRIS ALT2 TSL 518.79■□□□□ 0.61e-6■■□□□ 14.3
DDX55Q8NHQ9 CLUH-202ENST00000570628 5244 ntAPPRIS P2 TSL 2 BASIC17.99■□□□□ 0.471e-6■■□□□ 14.3
DDX55Q8NHQ9 SNRPC-201ENST00000244520 842 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.275e-8■■□□□ 14.3
DDX55Q8NHQ9 SNRPC-202ENST00000374017 1054 ntTSL 2 BASIC16.62■□□□□ 0.255e-8■■□□□ 14.3
DDX55Q8NHQ9 SNRPC-203ENST00000374018 600 ntTSL 5 BASIC12.73□□□□□ -0.375e-8■■□□□ 14.3
DDX55Q8NHQ9 HLA-A-207ENST00000495183 1766 nt29.13■■■□□ 2.252e-15■■□□□ 14.3
DDX55Q8NHQ9 HLA-A-201ENST00000376802 1334 ntBASIC21.88■■□□□ 1.092e-15■■□□□ 14.3
DDX55Q8NHQ9 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC20.96■□□□□ 0.952e-15■■□□□ 14.3
DDX55Q8NHQ9 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC20.48■□□□□ 0.872e-15■■□□□ 14.3
DDX55Q8NHQ9 HLA-A-202ENST00000376806 1854 ntBASIC18.66■□□□□ 0.582e-15■■□□□ 14.3
DDX55Q8NHQ9 HLA-A-208ENST00000496081 1786 nt18.55■□□□□ 0.562e-15■■□□□ 14.3
DDX55Q8NHQ9 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC26.24■■□□□ 1.793e-10■■□□□ 14.2
Retrieved 100 of 15,504 protein–RNA pairs in 102.6 ms