RNA–Protein interactions for RNA: ENST00000434152.5

APOE-203, Transcript of apolipoprotein E, humanhuman

TSL 2

Gene APOE, Length 864 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
APOE-203ENST00000434152 NISCHQ9Y2I1 1504 aa49.52■■■■■ 5.52
APOE-203ENST00000434152 CCDC180Q9P1Z9 1646 aa44.16■■■■■ 4.66
APOE-203ENST00000434152 ABCC9O60706 1549 aa44.07■■■■■ 4.65
APOE-203ENST00000434152 RB1CC1Q8TDY2 1594 aa41.98■■■■■ 4.31
APOE-203ENST00000434152 DCAF8L2P0C7V8 631 aa41.85■■■■■ 4.29
APOE-203ENST00000434152 NACADO15069 1562 aa41.78■■■■■ 4.28
APOE-203ENST00000434152 MYO15BQ96JP2 1530 aa41.3■■■■■ 4.2
APOE-203ENST00000434152 DNAJC5BQ9UF47 199 aa41.22■■■■■ 4.19
APOE-203ENST00000434152 PABPN1Q86U42 306 aaKnown RBP eCLIP41.18■■■■■ 4.18
APOE-203ENST00000434152 ZCCHC6Q5VYS8 1495 aaKnown RBP41.07■■■■■ 4.16
APOE-203ENST00000434152 UNC13AQ9UPW8 1703 aa40.93■■■■■ 4.14
APOE-203ENST00000434152 DCAF1Q9Y4B6 1507 aa40.88■■■■■ 4.14
APOE-203ENST00000434152 BICRAQ9NZM4 1560 aa40.78■■■■■ 4.12
APOE-203ENST00000434152 SCRIBQ14160 1630 aa40.34■■■■■ 4.05
APOE-203ENST00000434152 SHROOM4Q9ULL8 1493 aa40.19■■■■■ 4.03
APOE-203ENST00000434152 CC2D2AQ9P2K1 1620 aa39.76■■■■□ 3.95
APOE-203ENST00000434152 EIF4G1Q04637 1599 aaKnown RBP39.74■■■■□ 3.95
APOE-203ENST00000434152 CECR2Q9BXF3 1484 aa39.66■■■■□ 3.94
APOE-203ENST00000434152 NCAPD3P42695 1498 aa38.65■■■■□ 3.78
APOE-203ENST00000434152 ATAD2BQ9ULI0 1458 aa38.56■■■■□ 3.76
APOE-203ENST00000434152 SMARCA4P51532 1647 aa38.51■■■■□ 3.76
APOE-203ENST00000434152 SMARCA2P51531 1590 aa38.4■■■■□ 3.74
APOE-203ENST00000434152 BAZ1AQ9NRL2 1556 aaPredicted RBP38.38■■■■□ 3.73
APOE-203ENST00000434152 HMGXB3Q12766 1538 aa38.28■■■■□ 3.72
APOE-203ENST00000434152 MROH2BQ7Z745 1585 aa38.18■■■■□ 3.7
APOE-203ENST00000434152 BAZ1BQ9UIG0 1483 aaKnown RBP38.16■■■■□ 3.7
APOE-203ENST00000434152 PEG3Q9GZU2 1588 aa38.13■■■■□ 3.69
APOE-203ENST00000434152 ERCC6Q03468 1493 aa37.99■■■■□ 3.67
APOE-203ENST00000434152 NESP48681 1621 aa37.94■■■■□ 3.66
APOE-203ENST00000434152 CUX2O14529 1486 aa37.8■■■■□ 3.64
APOE-203ENST00000434152 WIZO95785 1651 aa37.68■■■■□ 3.62
APOE-203ENST00000434152 LAMC3Q9Y6N6 1575 aa37.63■■■■□ 3.61
APOE-203ENST00000434152 DNAJC5Q9H3Z4 198 aa37.61■■■■□ 3.61
APOE-203ENST00000434152 RSF1Q96T23 1441 aaPredicted RBP37.53■■■■□ 3.6
APOE-203ENST00000434152 CADPSQ9ULU8 1353 aa37.52■■■■□ 3.6
APOE-203ENST00000434152 PDS5BQ9NTI5 1447 aa37.5■■■■□ 3.59
APOE-203ENST00000434152 THOC2Q8NI27 1593 aaKnown RBP37.38■■■■□ 3.57
APOE-203ENST00000434152 KIF21AQ7Z4S6 1674 aa37.31■■■■□ 3.56
APOE-203ENST00000434152 TOP2AP11388 1531 aaKnown RBP37.21■■■■□ 3.55
APOE-203ENST00000434152 MRC2Q9UBG0 1479 aa37.11■■■■□ 3.53
APOE-203ENST00000434152 CFTRP13569 1480 aa37.1■■■■□ 3.53
APOE-203ENST00000434152 FANCD2Q9BXW9 1451 aa37.03■■■■□ 3.52
APOE-203ENST00000434152 CEP164Q9UPV0 1460 aa37.01■■■■□ 3.52
APOE-203ENST00000434152 WDR62O43379 1518 aa36.98■■■■□ 3.51
APOE-203ENST00000434152 CCDC88BA6NC98 1476 aa36.88■■■■□ 3.5
APOE-203ENST00000434152 URB2Q14146 1524 aaKnown RBP36.7■■■■□ 3.47
APOE-203ENST00000434152 PRDM2Q13029 1718 aa36.53■■■■□ 3.44
APOE-203ENST00000434152 SUPT5HO00267 1087 aaKnown RBP36.42■■■■□ 3.42
APOE-203ENST00000434152 TOPBP1Q92547 1522 aa36.35■■■■□ 3.41
APOE-203ENST00000434152 ABCC8Q09428 1581 aa36.29■■■■□ 3.4
APOE-203ENST00000434152 IFT140Q96RY7 1462 aa36.29■■■■□ 3.4
APOE-203ENST00000434152 OSCARQ8IYS5 282 aa36.27■■■■□ 3.4
APOE-203ENST00000434152 ZNF608Q9ULD9 1512 aaPredicted RBP36.24■■■■□ 3.39
APOE-203ENST00000434152 DNMBPQ6XZF7 1577 aa36.19■■■■□ 3.38
APOE-203ENST00000434152 TRIM41Q8WV44 630 aa36.07■■■■□ 3.36
APOE-203ENST00000434152 POLA1P09884 1462 aaPredicted RBP36■■■■□ 3.35
APOE-203ENST00000434152 AQRO60306 1485 aaKnown RBP eCLIP35.98■■■■□ 3.352e-8■■■□□ 17.8
APOE-203ENST00000434152 TARBP1Q13395 1621 aaKnown RBP35.96■■■■□ 3.35
APOE-203ENST00000434152 EIF4G3O43432 1585 aaKnown RBP35.93■■■■□ 3.34
APOE-203ENST00000434152 RAD54L2Q9Y4B4 1467 aa35.92■■■■□ 3.34
APOE-203ENST00000434152 SOGA1O94964 1423 aa35.91■■■■□ 3.34
APOE-203ENST00000434152 CUX1P39880 1505 aa35.83■■■■□ 3.33
APOE-203ENST00000434152 TDRD9Q8NDG6 1382 aaKnown RBP35.83■■■■□ 3.33
APOE-203ENST00000434152 FGD5Q6ZNL6 1462 aa35.82■■■■□ 3.32
APOE-203ENST00000434152 FBLN2P98095 1184 aa35.74■■■■□ 3.31
APOE-203ENST00000434152 RIMBP3CA6NJZ7 1639 aa35.6■■■■□ 3.29
APOE-203ENST00000434152 RIMBP3BA6NNM3 1639 aa35.6■■■■□ 3.29
APOE-203ENST00000434152 RIMBP3Q9UFD9 1639 aa35.6■■■■□ 3.29
APOE-203ENST00000434152 CHD1O14646 1710 aa35.58■■■■□ 3.29
APOE-203ENST00000434152 WDR97A6NE52 1622 aa35.56■■■■□ 3.28
APOE-203ENST00000434152 ARHGEF11O15085 1522 aa35.56■■■■□ 3.28
APOE-203ENST00000434152 SNAPC4Q5SXM2 1469 aa35.55■■■■□ 3.28
APOE-203ENST00000434152 CHMP7Q8WUX9 453 aaPredicted RBP35.51■■■■□ 3.28
APOE-203ENST00000434152 GRIN2BQ13224 1484 aa35.51■■■■□ 3.28
APOE-203ENST00000434152 MAGI1Q96QZ7 1491 aaPredicted RBP35.45■■■■□ 3.27
APOE-203ENST00000434152 GAPVD1Q14C86 1478 aa35.44■■■■□ 3.26
APOE-203ENST00000434152 ABCA10Q8WWZ4 1543 aa35.43■■■■□ 3.26
APOE-203ENST00000434152 CYB5RLQ6IPT4 315 aa35.42■■■■□ 3.26
APOE-203ENST00000434152 WRNQ14191 1432 aaPredicted RBP eCLIP35.38■■■■□ 3.251e-6■■■□□ 15.2
APOE-203ENST00000434152 SYNJ2O15056 1496 aa35.35■■■■□ 3.25
APOE-203ENST00000434152 TOP2BQ02880 1626 aa35.29■■■■□ 3.24
APOE-203ENST00000434152 BIVM-ERCC5R4GMW8 1640 aa35.29■■■■□ 3.24
APOE-203ENST00000434152 ABCA5Q8WWZ7 1642 aa35.28■■■■□ 3.24
APOE-203ENST00000434152 SYNJ1O43426 1573 aa35.27■■■■□ 3.24
APOE-203ENST00000434152 CLASP1Q7Z460 1538 aa35.25■■■■□ 3.23
APOE-203ENST00000434152 PBRM1Q86U86 1689 aa35.24■■■■□ 3.23
APOE-203ENST00000434152 ARAP1Q96P48 1450 aa35.24■■■■□ 3.23
APOE-203ENST00000434152 GRIN2AQ12879 1464 aa35.03■■■■□ 3.2
APOE-203ENST00000434152 FHAD1B1AJZ9 1412 aa35■■■■□ 3.19
APOE-203ENST00000434152 ADAMTS12P58397 1594 aa34.99■■■■□ 3.19
APOE-203ENST00000434152 ERICH3Q5RHP9 1530 aa34.96■■■■□ 3.19
APOE-203ENST00000434152 NUP160Q12769 1436 aa34.93■■■■□ 3.18
APOE-203ENST00000434152 TRHP20396 242 aaPredicted RBP34.91■■■■□ 3.18
APOE-203ENST00000434152 CEP170Q5SW79 1584 aa34.87■■■■□ 3.17
APOE-203ENST00000434152 ERCC6L2Q5T890 1561 aa34.77■■■■□ 3.16
APOE-203ENST00000434152 IGF1RP08069 1367 aa34.72■■■■□ 3.15
APOE-203ENST00000434152 JPH4Q96JJ6 628 aa34.69■■■■□ 3.14
APOE-203ENST00000434152 KIF27Q86VH2 1401 aa34.69■■■■□ 3.14
APOE-203ENST00000434152 SHROOM2Q13796 1616 aa34.66■■■■□ 3.14
APOE-203ENST00000434152 PRG4Q92954 1404 aaPredicted RBP34.61■■■■□ 3.13
Retrieved 100 of 20,778 RNA–protein pairs in 86.5 ms