RNA–Protein interactions for RNA: ENST00000614198.4

GGA3-221, Transcript of golgi associated, gamma adaptin ear containing, ARF binding protein 3, humanhuman

TSL 2

Gene GGA3, Length 3,438 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GGA3-221ENST00000614198 NISCHQ9Y2I1 1504 aa21.96■■□□□ 1.11
GGA3-221ENST00000614198 CCDC180Q9P1Z9 1646 aa18.91■□□□□ 0.62
GGA3-221ENST00000614198 DCAF8L2P0C7V8 631 aa18.65■□□□□ 0.58
GGA3-221ENST00000614198 SHROOM4Q9ULL8 1493 aa18.44■□□□□ 0.54
GGA3-221ENST00000614198 ZCCHC6Q5VYS8 1495 aaKnown RBP18.41■□□□□ 0.54
GGA3-221ENST00000614198 ABCC9O60706 1549 aa18.37■□□□□ 0.53
GGA3-221ENST00000614198 DCAF1Q9Y4B6 1507 aa17.89■□□□□ 0.45
GGA3-221ENST00000614198 SCRIBQ14160 1630 aa17.8■□□□□ 0.44
GGA3-221ENST00000614198 SUPT5HO00267 1087 aaKnown RBP17.7■□□□□ 0.42
GGA3-221ENST00000614198 NACADO15069 1562 aa17.67■□□□□ 0.42
GGA3-221ENST00000614198 MYO15BQ96JP2 1530 aa17.61■□□□□ 0.41
GGA3-221ENST00000614198 RB1CC1Q8TDY2 1594 aa17.58■□□□□ 0.4
GGA3-221ENST00000614198 PABPN1Q86U42 306 aaKnown RBP eCLIP17.49■□□□□ 0.39
GGA3-221ENST00000614198 UNC13AQ9UPW8 1703 aa17.41■□□□□ 0.38
GGA3-221ENST00000614198 CECR2Q9BXF3 1484 aa17.3■□□□□ 0.36
GGA3-221ENST00000614198 BICRAQ9NZM4 1560 aa17.21■□□□□ 0.35
GGA3-221ENST00000614198 RSF1Q96T23 1441 aaPredicted RBP17.14■□□□□ 0.33
GGA3-221ENST00000614198 MROH2BQ7Z745 1585 aa17.12■□□□□ 0.33
GGA3-221ENST00000614198 WIZO95785 1651 aa17.01■□□□□ 0.31
GGA3-221ENST00000614198 SMARCA4P51532 1647 aa16.89■□□□□ 0.29
GGA3-221ENST00000614198 BAZ1AQ9NRL2 1556 aaPredicted RBP16.89■□□□□ 0.29
GGA3-221ENST00000614198 CHIC1Q5VXU3 224 aa16.76■□□□□ 0.27
GGA3-221ENST00000614198 EIF4G1Q04637 1599 aaKnown RBP16.67■□□□□ 0.26
GGA3-221ENST00000614198 ATAD2BQ9ULI0 1458 aa16.64■□□□□ 0.25
GGA3-221ENST00000614198 TOP2AP11388 1531 aaKnown RBP16.61■□□□□ 0.25
GGA3-221ENST00000614198 CCDC88BA6NC98 1476 aa16.61■□□□□ 0.25
GGA3-221ENST00000614198 SMARCA2P51531 1590 aa16.55■□□□□ 0.24
GGA3-221ENST00000614198 BAZ1BQ9UIG0 1483 aaKnown RBP16.55■□□□□ 0.24
GGA3-221ENST00000614198 PEG3Q9GZU2 1588 aa16.51■□□□□ 0.23
GGA3-221ENST00000614198 DNAJC5BQ9UF47 199 aa16.51■□□□□ 0.23
GGA3-221ENST00000614198 CC2D2AQ9P2K1 1620 aa16.48■□□□□ 0.23
GGA3-221ENST00000614198 TRIM41Q8WV44 630 aa16.44■□□□□ 0.22
GGA3-221ENST00000614198 EHMT2Q96KQ7 1210 aa16.44■□□□□ 0.22
GGA3-221ENST00000614198 FAM9AQ8IZU1 332 aaPredicted RBP16.43■□□□□ 0.22
GGA3-221ENST00000614198 ABCC8Q09428 1581 aa16.41■□□□□ 0.22
GGA3-221ENST00000614198 NCAPD3P42695 1498 aa16.39■□□□□ 0.21
GGA3-221ENST00000614198 LOC105371045A0A1W2PR82 267 aa16.37■□□□□ 0.21
GGA3-221ENST00000614198 HRCP23327 699 aa16.3■□□□□ 0.2
GGA3-221ENST00000614198 HMGXB3Q12766 1538 aa16.29■□□□□ 0.2
GGA3-221ENST00000614198 NESP48681 1621 aa16.17■□□□□ 0.18
GGA3-221ENST00000614198 SYNJ1O43426 1573 aa16.11■□□□□ 0.17
GGA3-221ENST00000614198 WRNQ14191 1432 aaPredicted RBP eCLIP16.1■□□□□ 0.17
GGA3-221ENST00000614198 PELP1Q8IZL8 1130 aaKnown RBP16.1■□□□□ 0.17
GGA3-221ENST00000614198 RUSC2Q8N2Y8 1516 aa16.1■□□□□ 0.17
GGA3-221ENST00000614198 SOGA1O94964 1423 aa16.09■□□□□ 0.17
GGA3-221ENST00000614198 CFTRP13569 1480 aa16.08■□□□□ 0.16
GGA3-221ENST00000614198 CADPSQ9ULU8 1353 aa16.06■□□□□ 0.16
GGA3-221ENST00000614198 CUX1P39880 1505 aa15.96■□□□□ 0.15
GGA3-221ENST00000614198 FANCD2Q9BXW9 1451 aa15.93■□□□□ 0.14
GGA3-221ENST00000614198 PCGF6Q9BYE7 350 aa15.92■□□□□ 0.14
GGA3-221ENST00000614198 TOP2BQ02880 1626 aa15.88■□□□□ 0.13
GGA3-221ENST00000614198 PPARGC1BQ86YN6 1023 aaKnown RBP15.86■□□□□ 0.13
GGA3-221ENST00000614198 RANGAP1P46060 587 aaPredicted RBP15.86■□□□□ 0.13
GGA3-221ENST00000614198 PRDM2Q13029 1718 aa15.86■□□□□ 0.13
GGA3-221ENST00000614198 CSRNP3Q8WYN3 585 aa15.85■□□□□ 0.13
GGA3-221ENST00000614198 KIF21AQ7Z4S6 1674 aa15.82■□□□□ 0.12
GGA3-221ENST00000614198 BIVM-ERCC5R4GMW8 1640 aa15.82■□□□□ 0.12
GGA3-221ENST00000614198 RAD54L2Q9Y4B4 1467 aa15.79■□□□□ 0.12
GGA3-221ENST00000614198 LAMC3Q9Y6N6 1575 aa15.79■□□□□ 0.12
GGA3-221ENST00000614198 UBTFP17480 764 aaKnown RBP15.79■□□□□ 0.12
GGA3-221ENST00000614198 FGD5Q6ZNL6 1462 aa15.79■□□□□ 0.12
GGA3-221ENST00000614198 CEP164Q9UPV0 1460 aa15.77■□□□□ 0.12
GGA3-221ENST00000614198 URB2Q14146 1524 aaKnown RBP15.77■□□□□ 0.12
GGA3-221ENST00000614198 TOPBP1Q92547 1522 aa15.74■□□□□ 0.11
GGA3-221ENST00000614198 PDS5BQ9NTI5 1447 aa15.73■□□□□ 0.11
GGA3-221ENST00000614198 CUX2O14529 1486 aa15.71■□□□□ 0.11
GGA3-221ENST00000614198 RAPGEF2Q9Y4G8 1499 aa15.7■□□□□ 0.1
GGA3-221ENST00000614198 POLA1P09884 1462 aaPredicted RBP15.7■□□□□ 0.1
GGA3-221ENST00000614198 DNMBPQ6XZF7 1577 aa15.67■□□□□ 0.1
GGA3-221ENST00000614198 TTBK1Q5TCY1 1321 aaPredicted RBP15.66■□□□□ 0.1
GGA3-221ENST00000614198 TDRD9Q8NDG6 1382 aaKnown RBP15.66■□□□□ 0.1
GGA3-221ENST00000614198 ERCC6Q03468 1493 aa15.63■□□□□ 0.09
GGA3-221ENST00000614198 KIF27Q86VH2 1401 aa15.63■□□□□ 0.09
GGA3-221ENST00000614198 EEA1Q15075 1411 aa15.62■□□□□ 0.09
GGA3-221ENST00000614198 IGF1RP08069 1367 aa15.6■□□□□ 0.09
GGA3-221ENST00000614198 GOLGA3Q08378 1498 aa15.59■□□□□ 0.09
GGA3-221ENST00000614198 CEP162Q5TB80 1403 aa15.59■□□□□ 0.09
GGA3-221ENST00000614198 MYT1Q01538 1121 aa15.57■□□□□ 0.08
GGA3-221ENST00000614198 MRC2Q9UBG0 1479 aa15.55■□□□□ 0.08
GGA3-221ENST00000614198 TNIKQ9UKE5 1360 aa15.54■□□□□ 0.08
GGA3-221ENST00000614198 AQRO60306 1485 aaKnown RBP eCLIP15.54■□□□□ 0.085e-9■■■■□ 19.6
GGA3-221ENST00000614198 PRXQ9BXM0 1461 aa15.54■□□□□ 0.08
GGA3-221ENST00000614198 KIF21BO75037 1637 aa15.53■□□□□ 0.08
GGA3-221ENST00000614198 ZNF608Q9ULD9 1512 aaPredicted RBP15.52■□□□□ 0.07
GGA3-221ENST00000614198 ABCA10Q8WWZ4 1543 aa15.51■□□□□ 0.07
GGA3-221ENST00000614198 CARMIL1Q5VZK9 1371 aa15.5■□□□□ 0.07
GGA3-221ENST00000614198 SCAF1Q9H7N4 1312 aaKnown RBP15.48■□□□□ 0.07
GGA3-221ENST00000614198 TARBP1Q13395 1621 aaKnown RBP15.47■□□□□ 0.07
GGA3-221ENST00000614198 P3H3Q8IVL6 736 aa15.47■□□□□ 0.07
GGA3-221ENST00000614198 WDR97A6NE52 1622 aa15.45■□□□□ 0.06
GGA3-221ENST00000614198 GAPVD1Q14C86 1478 aa15.45■□□□□ 0.06
GGA3-221ENST00000614198 THOC2Q8NI27 1593 aaKnown RBP15.45■□□□□ 0.06
GGA3-221ENST00000614198 CLIP1P30622 1438 aa15.44■□□□□ 0.06
GGA3-221ENST00000614198 WDR62O43379 1518 aa15.43■□□□□ 0.06
GGA3-221ENST00000614198 ABCA5Q8WWZ7 1642 aa15.4■□□□□ 0.06
GGA3-221ENST00000614198 ERICH3Q5RHP9 1530 aa15.38■□□□□ 0.05
GGA3-221ENST00000614198 FBLN2P98095 1184 aa15.37■□□□□ 0.05
GGA3-221ENST00000614198 ARAP1Q96P48 1450 aa15.33■□□□□ 0.04
GGA3-221ENST00000614198 PBRM1Q86U86 1689 aa15.32■□□□□ 0.04
GGA3-221ENST00000614198 IFT140Q96RY7 1462 aa15.32■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms