RNA–Protein interactions for RNA: ENST00000538886.5

GGA3-202, Transcript of golgi associated, gamma adaptin ear containing, ARF binding protein 3, humanhuman

TSL 1 (best) BASIC

Gene GGA3, Length 3,766 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GGA3-202ENST00000538886 NISCHQ9Y2I1 1504 aa18.87■□□□□ 0.61
GGA3-202ENST00000538886 DCAF8L2P0C7V8 631 aa17.44■□□□□ 0.38
GGA3-202ENST00000538886 ABCC9O60706 1549 aa16.72■□□□□ 0.27
GGA3-202ENST00000538886 SHROOM4Q9ULL8 1493 aa16.31■□□□□ 0.2
GGA3-202ENST00000538886 CCDC180Q9P1Z9 1646 aa16.12■□□□□ 0.17
GGA3-202ENST00000538886 PABPN1Q86U42 306 aaKnown RBP eCLIP16.08■□□□□ 0.17
GGA3-202ENST00000538886 SUPT5HO00267 1087 aaKnown RBP15.73■□□□□ 0.11
GGA3-202ENST00000538886 ZCCHC6Q5VYS8 1495 aaKnown RBP15.63■□□□□ 0.09
GGA3-202ENST00000538886 RB1CC1Q8TDY2 1594 aa15.58■□□□□ 0.08
GGA3-202ENST00000538886 SCRIBQ14160 1630 aa15.53■□□□□ 0.08
GGA3-202ENST00000538886 NACADO15069 1562 aa15.46■□□□□ 0.07
GGA3-202ENST00000538886 DCAF1Q9Y4B6 1507 aa15.14■□□□□ 0.01
GGA3-202ENST00000538886 DNAJC5BQ9UF47 199 aa15.1■□□□□ 0.01
GGA3-202ENST00000538886 MYO15BQ96JP2 1530 aa15.04■□□□□ -0
GGA3-202ENST00000538886 CECR2Q9BXF3 1484 aa14.96□□□□□ -0.01
GGA3-202ENST00000538886 EHMT2Q96KQ7 1210 aa14.9□□□□□ -0.02
GGA3-202ENST00000538886 BICRAQ9NZM4 1560 aa14.79□□□□□ -0.04
GGA3-202ENST00000538886 FAM9AQ8IZU1 332 aaPredicted RBP14.72□□□□□ -0.05
GGA3-202ENST00000538886 RSF1Q96T23 1441 aaPredicted RBP14.7□□□□□ -0.06
GGA3-202ENST00000538886 UNC13AQ9UPW8 1703 aa14.69□□□□□ -0.06
GGA3-202ENST00000538886 MROH2BQ7Z745 1585 aa14.69□□□□□ -0.06
GGA3-202ENST00000538886 BAZ1BQ9UIG0 1483 aaKnown RBP14.69□□□□□ -0.06
GGA3-202ENST00000538886 EIF4G1Q04637 1599 aaKnown RBP14.68□□□□□ -0.06
GGA3-202ENST00000538886 BAZ1AQ9NRL2 1556 aaPredicted RBP14.65□□□□□ -0.06
GGA3-202ENST00000538886 CC2D2AQ9P2K1 1620 aa14.6□□□□□ -0.07
GGA3-202ENST00000538886 TRIM41Q8WV44 630 aa14.59□□□□□ -0.07
GGA3-202ENST00000538886 ATAD2BQ9ULI0 1458 aa14.57□□□□□ -0.08
GGA3-202ENST00000538886 RANGAP1P46060 587 aaPredicted RBP14.56□□□□□ -0.08
GGA3-202ENST00000538886 ERCC6Q03468 1493 aa14.54□□□□□ -0.08
GGA3-202ENST00000538886 FBLN2P98095 1184 aa14.51□□□□□ -0.09
GGA3-202ENST00000538886 SMARCA4P51532 1647 aa14.49□□□□□ -0.09
GGA3-202ENST00000538886 WIZO95785 1651 aa14.48□□□□□ -0.09
GGA3-202ENST00000538886 SMARCA2P51531 1590 aa14.47□□□□□ -0.09
GGA3-202ENST00000538886 TTBK1Q5TCY1 1321 aaPredicted RBP14.44□□□□□ -0.1
GGA3-202ENST00000538886 NCAPD3P42695 1498 aa14.38□□□□□ -0.11
GGA3-202ENST00000538886 NESP48681 1621 aa14.34□□□□□ -0.11
GGA3-202ENST00000538886 CCDC88BA6NC98 1476 aa14.33□□□□□ -0.12
GGA3-202ENST00000538886 CADPSQ9ULU8 1353 aa14.32□□□□□ -0.12
GGA3-202ENST00000538886 PDS5BQ9NTI5 1447 aa14.27□□□□□ -0.13
GGA3-202ENST00000538886 UBTFP17480 764 aaKnown RBP14.26□□□□□ -0.13
GGA3-202ENST00000538886 CHIC1Q5VXU3 224 aa14.24□□□□□ -0.13
GGA3-202ENST00000538886 ATP1B4Q9UN42 357 aaPredicted RBP14.22□□□□□ -0.13
GGA3-202ENST00000538886 TOP2AP11388 1531 aaKnown RBP14.21□□□□□ -0.13
GGA3-202ENST00000538886 FANCD2Q9BXW9 1451 aa14.14□□□□□ -0.15
GGA3-202ENST00000538886 CHMP7Q8WUX9 453 aaPredicted RBP14.13□□□□□ -0.15
GGA3-202ENST00000538886 HMGXB3Q12766 1538 aa14.12□□□□□ -0.15
GGA3-202ENST00000538886 CEP164Q9UPV0 1460 aa14.1□□□□□ -0.15
GGA3-202ENST00000538886 TDRD9Q8NDG6 1382 aaKnown RBP14.09□□□□□ -0.15
GGA3-202ENST00000538886 WRNQ14191 1432 aaPredicted RBP eCLIP14.06□□□□□ -0.16
GGA3-202ENST00000538886 LOC105371045A0A1W2PR82 267 aa14.05□□□□□ -0.16
GGA3-202ENST00000538886 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.03□□□□□ -0.16
GGA3-202ENST00000538886 HNRNPUL2Q1KMD3 747 aaKnown RBP14.03□□□□□ -0.16
GGA3-202ENST00000538886 P3H3Q8IVL6 736 aa14.02□□□□□ -0.16
GGA3-202ENST00000538886 ABCC8Q09428 1581 aa14.01□□□□□ -0.17
GGA3-202ENST00000538886 ARID3CA6NKF2 412 aa14.01□□□□□ -0.17
GGA3-202ENST00000538886 CFTRP13569 1480 aa14□□□□□ -0.17
GGA3-202ENST00000538886 SOGA1O94964 1423 aa13.99□□□□□ -0.17
GGA3-202ENST00000538886 PEG3Q9GZU2 1588 aa13.96□□□□□ -0.18
GGA3-202ENST00000538886 CSRNP3Q8WYN3 585 aa13.95□□□□□ -0.18
GGA3-202ENST00000538886 RAD54L2Q9Y4B4 1467 aa13.92□□□□□ -0.18
GGA3-202ENST00000538886 CUX2O14529 1486 aa13.9□□□□□ -0.18
GGA3-202ENST00000538886 PELP1Q8IZL8 1130 aaKnown RBP13.89□□□□□ -0.19
GGA3-202ENST00000538886 AQRO60306 1485 aaKnown RBP eCLIP13.89□□□□□ -0.191e-7■■■■□ 25.8
GGA3-202ENST00000538886 MRC2Q9UBG0 1479 aa13.89□□□□□ -0.19
GGA3-202ENST00000538886 APLP2Q06481 763 aa13.88□□□□□ -0.19
GGA3-202ENST00000538886 LAMC3Q9Y6N6 1575 aa13.88□□□□□ -0.19
GGA3-202ENST00000538886 PPARGC1BQ86YN6 1023 aaKnown RBP13.86□□□□□ -0.19
GGA3-202ENST00000538886 OSCARQ8IYS5 282 aa13.85□□□□□ -0.19
GGA3-202ENST00000538886 FGD5Q6ZNL6 1462 aa13.82□□□□□ -0.2
GGA3-202ENST00000538886 KIF27Q86VH2 1401 aa13.8□□□□□ -0.2
GGA3-202ENST00000538886 CYB5RLQ6IPT4 315 aa13.8□□□□□ -0.2
GGA3-202ENST00000538886 TOPBP1Q92547 1522 aa13.79□□□□□ -0.2
GGA3-202ENST00000538886 URB2Q14146 1524 aaKnown RBP13.77□□□□□ -0.2
GGA3-202ENST00000538886 TRHP20396 242 aaPredicted RBP13.75□□□□□ -0.21
GGA3-202ENST00000538886 POLA1P09884 1462 aaPredicted RBP13.73□□□□□ -0.21
GGA3-202ENST00000538886 NPM1P06748 294 aaKnown RBP eCLIP13.73□□□□□ -0.21
GGA3-202ENST00000538886 ZNF608Q9ULD9 1512 aaPredicted RBP13.73□□□□□ -0.21
GGA3-202ENST00000538886 CARMIL1Q5VZK9 1371 aa13.72□□□□□ -0.21
GGA3-202ENST00000538886 MYT1LQ9UL68 1186 aa13.71□□□□□ -0.21
GGA3-202ENST00000538886 CUX1P39880 1505 aa13.7□□□□□ -0.22
GGA3-202ENST00000538886 KIF21AQ7Z4S6 1674 aa13.7□□□□□ -0.22
GGA3-202ENST00000538886 RUSC2Q8N2Y8 1516 aa13.69□□□□□ -0.22
GGA3-202ENST00000538886 GAPVD1Q14C86 1478 aa13.69□□□□□ -0.22
GGA3-202ENST00000538886 IFT140Q96RY7 1462 aa13.66□□□□□ -0.22
GGA3-202ENST00000538886 JPH4Q96JJ6 628 aa13.65□□□□□ -0.23
GGA3-202ENST00000538886 KCNH8Q96L42 1107 aa13.65□□□□□ -0.23
GGA3-202ENST00000538886 SYNJ1O43426 1573 aa13.64□□□□□ -0.23
GGA3-202ENST00000538886 DNMBPQ6XZF7 1577 aa13.62□□□□□ -0.23
GGA3-202ENST00000538886 IGF1RP08069 1367 aa13.6□□□□□ -0.23
GGA3-202ENST00000538886 SNAPC4Q5SXM2 1469 aa13.58□□□□□ -0.24
GGA3-202ENST00000538886 ITGAEP38570 1179 aa13.57□□□□□ -0.24
GGA3-202ENST00000538886 GRIN2BQ13224 1484 aa13.57□□□□□ -0.24
GGA3-202ENST00000538886 MYT1Q01538 1121 aa13.54□□□□□ -0.24
GGA3-202ENST00000538886 ZNF777Q9ULD5 760 aaPredicted RBP13.51□□□□□ -0.25
GGA3-202ENST00000538886 WDR62O43379 1518 aa13.5□□□□□ -0.25
GGA3-202ENST00000538886 TOP2BQ02880 1626 aa13.48□□□□□ -0.25
GGA3-202ENST00000538886 FHAD1B1AJZ9 1412 aa13.46□□□□□ -0.25
GGA3-202ENST00000538886 RAPGEF2Q9Y4G8 1499 aa13.46□□□□□ -0.26
GGA3-202ENST00000538886 PLPPR3Q6T4P5 718 aa13.46□□□□□ -0.26
GGA3-202ENST00000538886 EEA1Q15075 1411 aa13.45□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms