RNA–Protein interactions for RNA: ENST00000230418.8

PTK7-201, Transcript of protein tyrosine kinase 7 (inactive), humanhuman

TSL 1 (best)

Gene PTK7, Length 3,958 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTK7-201ENST00000230418 NISCHQ9Y2I1 1504 aa28.14■■■□□ 2.1
PTK7-201ENST00000230418 DCAF8L2P0C7V8 631 aa26.2■■□□□ 1.79
PTK7-201ENST00000230418 SHROOM4Q9ULL8 1493 aa25.62■■□□□ 1.69
PTK7-201ENST00000230418 SUPT5HO00267 1087 aaKnown RBP25.34■■□□□ 1.65
PTK7-201ENST00000230418 EHMT2Q96KQ7 1210 aa24.05■■□□□ 1.44
PTK7-201ENST00000230418 FAM9AQ8IZU1 332 aaPredicted RBP23.71■■□□□ 1.39
PTK7-201ENST00000230418 ABCC9O60706 1549 aa23.58■■□□□ 1.37
PTK7-201ENST00000230418 ZCCHC6Q5VYS8 1495 aaKnown RBP23.5■■□□□ 1.35
PTK7-201ENST00000230418 CHIC1Q5VXU3 224 aa23.46■■□□□ 1.35
PTK7-201ENST00000230418 TRIM41Q8WV44 630 aa23.34■■□□□ 1.33
PTK7-201ENST00000230418 PCGF6Q9BYE7 350 aa23.34■■□□□ 1.33
PTK7-201ENST00000230418 CCDC180Q9P1Z9 1646 aa23.33■■□□□ 1.33
PTK7-201ENST00000230418 LOC105371045A0A1W2PR82 267 aa23.27■■□□□ 1.32
PTK7-201ENST00000230418 TTBK1Q5TCY1 1321 aaPredicted RBP23.11■■□□□ 1.29
PTK7-201ENST00000230418 PABPN1Q86U42 306 aaKnown RBP eCLIP23.06■■□□□ 1.288e-8■■□□□ 13.3
PTK7-201ENST00000230418 SCRIBQ14160 1630 aa22.96■■□□□ 1.27
PTK7-201ENST00000230418 PPARGC1BQ86YN6 1023 aaKnown RBP22.93■■□□□ 1.26
PTK7-201ENST00000230418 RANGAP1P46060 587 aaPredicted RBP22.9■■□□□ 1.26
PTK7-201ENST00000230418 UBTFP17480 764 aaKnown RBP22.67■■□□□ 1.22
PTK7-201ENST00000230418 MYO15BQ96JP2 1530 aa22.56■■□□□ 1.2
PTK7-201ENST00000230418 APLP2Q06481 763 aa22.45■■□□□ 1.18
PTK7-201ENST00000230418 RSF1Q96T23 1441 aaPredicted RBP22.44■■□□□ 1.18
PTK7-201ENST00000230418 TRIM26Q12899 539 aaPredicted RBP22.43■■□□□ 1.18
PTK7-201ENST00000230418 DCAF1Q9Y4B6 1507 aa22.41■■□□□ 1.18
PTK7-201ENST00000230418 HRCP23327 699 aa22.4■■□□□ 1.18
PTK7-201ENST00000230418 CECR2Q9BXF3 1484 aa22.32■■□□□ 1.16
PTK7-201ENST00000230418 CCER1Q8TC90 406 aaPredicted RBP22.28■■□□□ 1.16
PTK7-201ENST00000230418 NACADO15069 1562 aa22.21■■□□□ 1.15
PTK7-201ENST00000230418 ATP1B4Q9UN42 357 aaPredicted RBP22.18■■□□□ 1.14
PTK7-201ENST00000230418 RB1CC1Q8TDY2 1594 aa22.16■■□□□ 1.14
PTK7-201ENST00000230418 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.03■■□□□ 1.12
PTK7-201ENST00000230418 MROH2BQ7Z745 1585 aa22.01■■□□□ 1.11
PTK7-201ENST00000230418 ZEB1P37275 1124 aaPredicted RBP21.98■■□□□ 1.11
PTK7-201ENST00000230418 HNRNPUL2Q1KMD3 747 aaKnown RBP21.98■■□□□ 1.11
PTK7-201ENST00000230418 CSRNP3Q8WYN3 585 aa21.93■■□□□ 1.1
PTK7-201ENST00000230418 ITGAEP38570 1179 aa21.88■■□□□ 1.09
PTK7-201ENST00000230418 WIZO95785 1651 aa21.77■■□□□ 1.08
PTK7-201ENST00000230418 BAZ1AQ9NRL2 1556 aaPredicted RBP21.76■■□□□ 1.07
PTK7-201ENST00000230418 CCDC88BA6NC98 1476 aa21.6■■□□□ 1.05
PTK7-201ENST00000230418 ABCC8Q09428 1581 aa21.59■■□□□ 1.05
PTK7-201ENST00000230418 P3H3Q8IVL6 736 aa21.58■■□□□ 1.05
PTK7-201ENST00000230418 BAZ1BQ9UIG0 1483 aaKnown RBP21.55■■□□□ 1.04
PTK7-201ENST00000230418 SOGA1O94964 1423 aa21.54■■□□□ 1.04
PTK7-201ENST00000230418 YTHDC1Q96MU7 727 aaKnown RBP21.54■■□□□ 1.04
PTK7-201ENST00000230418 WRNQ14191 1432 aaPredicted RBP eCLIP21.5■■□□□ 1.03
PTK7-201ENST00000230418 CEP162Q5TB80 1403 aa21.4■■□□□ 1.02
PTK7-201ENST00000230418 FAM50AQ14320 339 aaKnown RBP21.38■■□□□ 1.01
PTK7-201ENST00000230418 SMARCA4P51532 1647 aa21.35■■□□□ 1.01
PTK7-201ENST00000230418 TOP2AP11388 1531 aaKnown RBP21.33■■□□□ 1.01
PTK7-201ENST00000230418 ARID3CA6NKF2 412 aa21.33■■□□□ 1
PTK7-201ENST00000230418 DIEXFQ68CQ4 756 aaKnown RBP21.28■■□□□ 1
PTK7-201ENST00000230418 CLIP1P30622 1438 aa21.27■■□□□ 1
PTK7-201ENST00000230418 RUSC2Q8N2Y8 1516 aa21.26■□□□□ 0.99
PTK7-201ENST00000230418 CENPBP07199 599 aaPredicted RBP21.24■□□□□ 0.99
PTK7-201ENST00000230418 GOLGA3Q08378 1498 aa21.22■□□□□ 0.99
PTK7-201ENST00000230418 ATAD2BQ9ULI0 1458 aa21.21■□□□□ 0.99
PTK7-201ENST00000230418 TNIKQ9UKE5 1360 aa21.2■□□□□ 0.98
PTK7-201ENST00000230418 FBLN2P98095 1184 aa21.2■□□□□ 0.98
PTK7-201ENST00000230418 EEA1Q15075 1411 aa21.17■□□□□ 0.98
PTK7-201ENST00000230418 NEUROD1Q13562 356 aa21.15■□□□□ 0.98
PTK7-201ENST00000230418 SMARCA2P51531 1590 aa21.13■□□□□ 0.97
PTK7-201ENST00000230418 CEP164Q9UPV0 1460 aa21.07■□□□□ 0.96
PTK7-201ENST00000230418 KIF27Q86VH2 1401 aa21.01■□□□□ 0.95
PTK7-201ENST00000230418 ZNF316A6NFI3 1004 aaPredicted RBP20.98■□□□□ 0.95
PTK7-201ENST00000230418 CNGB1Q14028 1251 aaPredicted RBP20.95■□□□□ 0.94
PTK7-201ENST00000230418 TRIM52Q96A61 297 aa20.93■□□□□ 0.94
PTK7-201ENST00000230418 CUX2O14529 1486 aa20.93■□□□□ 0.94
PTK7-201ENST00000230418 BICRAQ9NZM4 1560 aa20.92■□□□□ 0.94
PTK7-201ENST00000230418 RAPGEF2Q9Y4G8 1499 aa20.91■□□□□ 0.94
PTK7-201ENST00000230418 KANK4Q5T7N3 995 aaPredicted RBP20.89■□□□□ 0.93
PTK7-201ENST00000230418 POLR3GLQ9BT43 218 aa20.86■□□□□ 0.93
PTK7-201ENST00000230418 CARMIL1Q5VZK9 1371 aa20.81■□□□□ 0.92
PTK7-201ENST00000230418 CHIC2Q9UKJ5 165 aa20.81■□□□□ 0.92
PTK7-201ENST00000230418 UNC13AQ9UPW8 1703 aa20.8■□□□□ 0.92
PTK7-201ENST00000230418 CADPSQ9ULU8 1353 aa20.79■□□□□ 0.92
PTK7-201ENST00000230418 VPS8Q8N3P4 1428 aa20.77■□□□□ 0.92
PTK7-201ENST00000230418 EIF4G1Q04637 1599 aaKnown RBP20.77■□□□□ 0.92
PTK7-201ENST00000230418 ZNF777Q9ULD5 760 aaPredicted RBP20.76■□□□□ 0.91
PTK7-201ENST00000230418 TDRD9Q8NDG6 1382 aaKnown RBP20.75■□□□□ 0.91
PTK7-201ENST00000230418 SYNJ1O43426 1573 aa20.73■□□□□ 0.91
PTK7-201ENST00000230418 MYT1LQ9UL68 1186 aa20.72■□□□□ 0.91
PTK7-201ENST00000230418 GTF3C3Q9Y5Q9 886 aa20.71■□□□□ 0.91
PTK7-201ENST00000230418 HIRIP3Q9BW71 556 aaPredicted RBP20.7■□□□□ 0.9
PTK7-201ENST00000230418 MTUS2Q5JR59 1369 aa20.69■□□□□ 0.9
PTK7-201ENST00000230418 NCAPD3P42695 1498 aa20.68■□□□□ 0.9
PTK7-201ENST00000230418 ZNF326Q5BKZ1 582 aaKnown RBP20.66■□□□□ 0.9
PTK7-201ENST00000230418 PELP1Q8IZL8 1130 aaKnown RBP20.66■□□□□ 0.9
PTK7-201ENST00000230418 MIER1Q8N108 512 aa20.63■□□□□ 0.89
PTK7-201ENST00000230418 CHMP7Q8WUX9 453 aaPredicted RBP20.63■□□□□ 0.89
PTK7-201ENST00000230418 DNAJC5BQ9UF47 199 aa20.63■□□□□ 0.89
PTK7-201ENST00000230418 RRP7BPQ9NSQ0 103 aa20.61■□□□□ 0.89
PTK7-201ENST00000230418 ACIN1Q9UKV3 1341 aaKnown RBP20.6■□□□□ 0.89
PTK7-201ENST00000230418 FANCD2Q9BXW9 1451 aa20.56■□□□□ 0.88
PTK7-201ENST00000230418 SIN3AQ96ST3 1273 aa20.56■□□□□ 0.88
PTK7-201ENST00000230418 DDX10Q13206 875 aaKnown RBP20.54■□□□□ 0.88
PTK7-201ENST00000230418 CCNB3Q8WWL7 1395 aa20.54■□□□□ 0.88
PTK7-201ENST00000230418 RAD54L2Q9Y4B4 1467 aa20.53■□□□□ 0.88
PTK7-201ENST00000230418 IGF1RP08069 1367 aa20.52■□□□□ 0.87
PTK7-201ENST00000230418 NESP48681 1621 aa20.51■□□□□ 0.87
PTK7-201ENST00000230418 FGD5Q6ZNL6 1462 aa20.5■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 67.7 ms