RNA–Protein interactions for RNA: ENST00000621217.4

GGA3-222, Transcript of golgi associated, gamma adaptin ear containing, ARF binding protein 3, humanhuman

TSL 2

Gene GGA3, Length 4,181 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GGA3-222ENST00000621217 NISCHQ9Y2I1 1504 aa17.43■□□□□ 0.38
GGA3-222ENST00000621217 DCAF8L2P0C7V8 631 aa16.62■□□□□ 0.25
GGA3-222ENST00000621217 SHROOM4Q9ULL8 1493 aa16.02■□□□□ 0.16
GGA3-222ENST00000621217 SUPT5HO00267 1087 aaKnown RBP15.82■□□□□ 0.12
GGA3-222ENST00000621217 EHMT2Q96KQ7 1210 aa15.14■□□□□ 0.01
GGA3-222ENST00000621217 ABCC9O60706 1549 aa14.91□□□□□ -0.02
GGA3-222ENST00000621217 FAM9AQ8IZU1 332 aaPredicted RBP14.85□□□□□ -0.03
GGA3-222ENST00000621217 PCGF6Q9BYE7 350 aa14.72□□□□□ -0.05
GGA3-222ENST00000621217 PABPN1Q86U42 306 aaKnown RBP eCLIP14.62□□□□□ -0.07
GGA3-222ENST00000621217 CHIC1Q5VXU3 224 aa14.61□□□□□ -0.07
GGA3-222ENST00000621217 LOC105371045A0A1W2PR82 267 aa14.56□□□□□ -0.08
GGA3-222ENST00000621217 TRIM41Q8WV44 630 aa14.53□□□□□ -0.08
GGA3-222ENST00000621217 TTBK1Q5TCY1 1321 aaPredicted RBP14.51□□□□□ -0.09
GGA3-222ENST00000621217 ZCCHC6Q5VYS8 1495 aaKnown RBP14.5□□□□□ -0.09
GGA3-222ENST00000621217 RANGAP1P46060 587 aaPredicted RBP14.45□□□□□ -0.1
GGA3-222ENST00000621217 PELP1Q8IZL8 1130 aaKnown RBP14.43□□□□□ -0.1
GGA3-222ENST00000621217 CCDC180Q9P1Z9 1646 aa14.42□□□□□ -0.1
GGA3-222ENST00000621217 PPARGC1BQ86YN6 1023 aaKnown RBP14.37□□□□□ -0.11
GGA3-222ENST00000621217 SCRIBQ14160 1630 aa14.33□□□□□ -0.12
GGA3-222ENST00000621217 MYT1Q01538 1121 aa14.28□□□□□ -0.12
GGA3-222ENST00000621217 HRCP23327 699 aa14.19□□□□□ -0.14
GGA3-222ENST00000621217 UBTFP17480 764 aaKnown RBP14.18□□□□□ -0.14
GGA3-222ENST00000621217 MYO15BQ96JP2 1530 aa14.16□□□□□ -0.14
GGA3-222ENST00000621217 TRIM26Q12899 539 aaPredicted RBP14.06□□□□□ -0.16
GGA3-222ENST00000621217 APLP2Q06481 763 aa14.02□□□□□ -0.16
GGA3-222ENST00000621217 ATP1B4Q9UN42 357 aaPredicted RBP14□□□□□ -0.17
GGA3-222ENST00000621217 CCER1Q8TC90 406 aaPredicted RBP13.96□□□□□ -0.17
GGA3-222ENST00000621217 CECR2Q9BXF3 1484 aa13.9□□□□□ -0.18
GGA3-222ENST00000621217 RSF1Q96T23 1441 aaPredicted RBP13.89□□□□□ -0.19
GGA3-222ENST00000621217 RB1CC1Q8TDY2 1594 aa13.85□□□□□ -0.19
GGA3-222ENST00000621217 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.84□□□□□ -0.19
GGA3-222ENST00000621217 NACADO15069 1562 aa13.81□□□□□ -0.2
GGA3-222ENST00000621217 ZEB1P37275 1124 aaPredicted RBP13.78□□□□□ -0.2
GGA3-222ENST00000621217 DCAF1Q9Y4B6 1507 aa13.78□□□□□ -0.2
GGA3-222ENST00000621217 CENPBP07199 599 aaPredicted RBP13.72□□□□□ -0.21
GGA3-222ENST00000621217 ITGAEP38570 1179 aa13.72□□□□□ -0.21
GGA3-222ENST00000621217 HNRNPUL2Q1KMD3 747 aaKnown RBP13.71□□□□□ -0.21
GGA3-222ENST00000621217 MROH2BQ7Z745 1585 aa13.66□□□□□ -0.22
GGA3-222ENST00000621217 YTHDC1Q96MU7 727 aaKnown RBP13.64□□□□□ -0.23
GGA3-222ENST00000621217 CSRNP3Q8WYN3 585 aa13.62□□□□□ -0.23
GGA3-222ENST00000621217 P3H3Q8IVL6 736 aa13.58□□□□□ -0.24
GGA3-222ENST00000621217 WIZO95785 1651 aa13.51□□□□□ -0.25
GGA3-222ENST00000621217 BAZ1AQ9NRL2 1556 aaPredicted RBP13.5□□□□□ -0.25
GGA3-222ENST00000621217 ARID3CA6NKF2 412 aa13.5□□□□□ -0.25
GGA3-222ENST00000621217 FBLN2P98095 1184 aa13.49□□□□□ -0.25
GGA3-222ENST00000621217 BAZ1BQ9UIG0 1483 aaKnown RBP13.46□□□□□ -0.25
GGA3-222ENST00000621217 DIEXFQ68CQ4 756 aaKnown RBP13.42□□□□□ -0.26
GGA3-222ENST00000621217 CCDC88BA6NC98 1476 aa13.4□□□□□ -0.26
GGA3-222ENST00000621217 ERICH6Q7L0X2 663 aa13.4□□□□□ -0.26
GGA3-222ENST00000621217 ABCC8Q09428 1581 aa13.39□□□□□ -0.27
GGA3-222ENST00000621217 FAM50AQ14320 339 aaKnown RBP13.36□□□□□ -0.27
GGA3-222ENST00000621217 WRNQ14191 1432 aaPredicted RBP eCLIP13.35□□□□□ -0.27
GGA3-222ENST00000621217 SOGA1O94964 1423 aa13.35□□□□□ -0.27
GGA3-222ENST00000621217 CEP162Q5TB80 1403 aa13.26□□□□□ -0.29
GGA3-222ENST00000621217 SMARCA4P51532 1647 aa13.24□□□□□ -0.29
GGA3-222ENST00000621217 ATAD2BQ9ULI0 1458 aa13.22□□□□□ -0.29
GGA3-222ENST00000621217 GTF3C3Q9Y5Q9 886 aa13.19□□□□□ -0.3
GGA3-222ENST00000621217 NEUROD1Q13562 356 aa13.18□□□□□ -0.3
GGA3-222ENST00000621217 TOP2AP11388 1531 aaKnown RBP13.18□□□□□ -0.3
GGA3-222ENST00000621217 MYT1LQ9UL68 1186 aa13.18□□□□□ -0.3
GGA3-222ENST00000621217 CNGB1Q14028 1251 aaPredicted RBP13.18□□□□□ -0.3
GGA3-222ENST00000621217 RUSC2Q8N2Y8 1516 aa13.18□□□□□ -0.3
GGA3-222ENST00000621217 ZNF316A6NFI3 1004 aaPredicted RBP13.17□□□□□ -0.3
GGA3-222ENST00000621217 CLIP1P30622 1438 aa13.17□□□□□ -0.3
GGA3-222ENST00000621217 SMARCA2P51531 1590 aa13.12□□□□□ -0.31
GGA3-222ENST00000621217 SCAF1Q9H7N4 1312 aaKnown RBP13.12□□□□□ -0.31
GGA3-222ENST00000621217 DNAJC5BQ9UF47 199 aa13.1□□□□□ -0.31
GGA3-222ENST00000621217 TRIM52Q96A61 297 aa13.1□□□□□ -0.31
GGA3-222ENST00000621217 TNIKQ9UKE5 1360 aa13.1□□□□□ -0.31
GGA3-222ENST00000621217 POLR3GLQ9BT43 218 aa13.09□□□□□ -0.31
GGA3-222ENST00000621217 GOLGA3Q08378 1498 aa13.09□□□□□ -0.31
GGA3-222ENST00000621217 ZNF777Q9ULD5 760 aaPredicted RBP13.09□□□□□ -0.31
GGA3-222ENST00000621217 ACIN1Q9UKV3 1341 aaKnown RBP13.09□□□□□ -0.31
GGA3-222ENST00000621217 NEFLP07196 543 aa13.06□□□□□ -0.32
GGA3-222ENST00000621217 KIF27Q86VH2 1401 aa13.06□□□□□ -0.32
GGA3-222ENST00000621217 CUX2O14529 1486 aa13.06□□□□□ -0.32
GGA3-222ENST00000621217 TDRD9Q8NDG6 1382 aaKnown RBP13.04□□□□□ -0.32
GGA3-222ENST00000621217 CHMP7Q8WUX9 453 aaPredicted RBP13.04□□□□□ -0.32
GGA3-222ENST00000621217 CHIC2Q9UKJ5 165 aa13.04□□□□□ -0.32
GGA3-222ENST00000621217 BICRAQ9NZM4 1560 aa13.03□□□□□ -0.32
GGA3-222ENST00000621217 EEA1Q15075 1411 aa13.03□□□□□ -0.32
GGA3-222ENST00000621217 MIER1Q8N108 512 aa13.02□□□□□ -0.32
GGA3-222ENST00000621217 CEP164Q9UPV0 1460 aa13.01□□□□□ -0.33
GGA3-222ENST00000621217 CADPSQ9ULU8 1353 aa13□□□□□ -0.33
GGA3-222ENST00000621217 EIF4G1Q04637 1599 aaKnown RBP12.99□□□□□ -0.33
GGA3-222ENST00000621217 HIRIP3Q9BW71 556 aaPredicted RBP12.98□□□□□ -0.33
GGA3-222ENST00000621217 CARMIL1Q5VZK9 1371 aa12.97□□□□□ -0.33
GGA3-222ENST00000621217 ZNF326Q5BKZ1 582 aaKnown RBP12.96□□□□□ -0.33
GGA3-222ENST00000621217 KANK4Q5T7N3 995 aaPredicted RBP12.96□□□□□ -0.33
GGA3-222ENST00000621217 ERCC6Q03468 1493 aa12.95□□□□□ -0.34
GGA3-222ENST00000621217 RAPGEF2Q9Y4G8 1499 aa12.95□□□□□ -0.34
GGA3-222ENST00000621217 BCANQ96GW7 911 aa12.94□□□□□ -0.34
GGA3-222ENST00000621217 UNC13AQ9UPW8 1703 aa12.93□□□□□ -0.34
GGA3-222ENST00000621217 MTUS2Q5JR59 1369 aa12.91□□□□□ -0.34
GGA3-222ENST00000621217 NESP48681 1621 aa12.9□□□□□ -0.35
GGA3-222ENST00000621217 RRP7BPQ9NSQ0 103 aa12.88□□□□□ -0.35
GGA3-222ENST00000621217 NCAPD3P42695 1498 aa12.88□□□□□ -0.35
GGA3-222ENST00000621217 DDX10Q13206 875 aaKnown RBP12.87□□□□□ -0.35
GGA3-222ENST00000621217 FANCD2Q9BXW9 1451 aa12.86□□□□□ -0.35
GGA3-222ENST00000621217 KCNH8Q96L42 1107 aa12.85□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 84.5 ms