RNA–Protein interactions for RNA: ENST00000613421.4

GGA3-220, Transcript of golgi associated, gamma adaptin ear containing, ARF binding protein 3, humanhuman

TSL 2

Gene GGA3, Length 5,156 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GGA3-220ENST00000613421 NISCHQ9Y2I1 1504 aa24.36■■□□□ 1.49
GGA3-220ENST00000613421 DCAF8L2P0C7V8 631 aa23.94■■□□□ 1.42
GGA3-220ENST00000613421 SUPT5HO00267 1087 aaKnown RBP23.11■■□□□ 1.29
GGA3-220ENST00000613421 SHROOM4Q9ULL8 1493 aa22.91■■□□□ 1.26
GGA3-220ENST00000613421 EHMT2Q96KQ7 1210 aa22.02■■□□□ 1.12
GGA3-220ENST00000613421 FAM9AQ8IZU1 332 aaPredicted RBP21.68■■□□□ 1.06
GGA3-220ENST00000613421 PCGF6Q9BYE7 350 aa21.62■■□□□ 1.05
GGA3-220ENST00000613421 APLP2Q06481 763 aa21.52■■□□□ 1.04
GGA3-220ENST00000613421 TRIM41Q8WV44 630 aa21.46■■□□□ 1.03
GGA3-220ENST00000613421 TTBK1Q5TCY1 1321 aaPredicted RBP21.3■■□□□ 1
GGA3-220ENST00000613421 ZEB1P37275 1124 aaPredicted RBP21.19■□□□□ 0.98
GGA3-220ENST00000613421 PELP1Q8IZL8 1130 aaKnown RBP21.12■□□□□ 0.97
GGA3-220ENST00000613421 RANGAP1P46060 587 aaPredicted RBP21.05■□□□□ 0.96
GGA3-220ENST00000613421 CCER1Q8TC90 406 aaPredicted RBP21.04■□□□□ 0.96
GGA3-220ENST00000613421 UBTFP17480 764 aaKnown RBP21.01■□□□□ 0.95
GGA3-220ENST00000613421 CHIC1Q5VXU3 224 aa20.98■□□□□ 0.95
GGA3-220ENST00000613421 TRIM26Q12899 539 aaPredicted RBP20.87■□□□□ 0.93
GGA3-220ENST00000613421 CENPBP07199 599 aaPredicted RBP20.85■□□□□ 0.93
GGA3-220ENST00000613421 LOC105371045A0A1W2PR82 267 aa20.79■□□□□ 0.92
GGA3-220ENST00000613421 PPARGC1BQ86YN6 1023 aaKnown RBP20.77■□□□□ 0.92
GGA3-220ENST00000613421 HRCP23327 699 aa20.77■□□□□ 0.92
GGA3-220ENST00000613421 ATP1B4Q9UN42 357 aaPredicted RBP20.74■□□□□ 0.91
GGA3-220ENST00000613421 ABCC9O60706 1549 aa20.47■□□□□ 0.87
GGA3-220ENST00000613421 YTHDC1Q96MU7 727 aaKnown RBP20.43■□□□□ 0.86
GGA3-220ENST00000613421 HNRNPUL2Q1KMD3 747 aaKnown RBP20.28■□□□□ 0.84
GGA3-220ENST00000613421 ZCCHC6Q5VYS8 1495 aaKnown RBP20.28■□□□□ 0.84
GGA3-220ENST00000613421 ITGAEP38570 1179 aa20.25■□□□□ 0.83
GGA3-220ENST00000613421 NEFLP07196 543 aa20.22■□□□□ 0.83
GGA3-220ENST00000613421 PABPN1Q86U42 306 aaKnown RBP eCLIP20.2■□□□□ 0.82
GGA3-220ENST00000613421 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.18■□□□□ 0.82
GGA3-220ENST00000613421 ERICH6Q7L0X2 663 aa20.17■□□□□ 0.82
GGA3-220ENST00000613421 MYT1Q01538 1121 aa20.14■□□□□ 0.81
GGA3-220ENST00000613421 CCDC180Q9P1Z9 1646 aa20.09■□□□□ 0.81
GGA3-220ENST00000613421 DIEXFQ68CQ4 756 aaKnown RBP19.99■□□□□ 0.79
GGA3-220ENST00000613421 SCRIBQ14160 1630 aa19.98■□□□□ 0.79
GGA3-220ENST00000613421 FAM50AQ14320 339 aaKnown RBP19.83■□□□□ 0.77
GGA3-220ENST00000613421 CSRNP3Q8WYN3 585 aa19.82■□□□□ 0.76
GGA3-220ENST00000613421 POLR3GLQ9BT43 218 aa19.8■□□□□ 0.76
GGA3-220ENST00000613421 DCAF1Q9Y4B6 1507 aa19.79■□□□□ 0.76
GGA3-220ENST00000613421 MYT1LQ9UL68 1186 aa19.69■□□□□ 0.74
GGA3-220ENST00000613421 NEUROD1Q13562 356 aa19.64■□□□□ 0.73
GGA3-220ENST00000613421 ZNF316A6NFI3 1004 aaPredicted RBP19.62■□□□□ 0.73
GGA3-220ENST00000613421 CNGB1Q14028 1251 aaPredicted RBP19.61■□□□□ 0.73
GGA3-220ENST00000613421 TRIM52Q96A61 297 aa19.6■□□□□ 0.73
GGA3-220ENST00000613421 MYO15BQ96JP2 1530 aa19.55■□□□□ 0.72
GGA3-220ENST00000613421 GTF3C3Q9Y5Q9 886 aa19.53■□□□□ 0.72
GGA3-220ENST00000613421 RSF1Q96T23 1441 aaPredicted RBP19.5■□□□□ 0.71
GGA3-220ENST00000613421 P3H3Q8IVL6 736 aa19.48■□□□□ 0.71
GGA3-220ENST00000613421 ANP32CO43423 234 aa19.42■□□□□ 0.7
GGA3-220ENST00000613421 RB1CC1Q8TDY2 1594 aa19.41■□□□□ 0.7
GGA3-220ENST00000613421 ACIN1Q9UKV3 1341 aaKnown RBP19.39■□□□□ 0.69
GGA3-220ENST00000613421 DAXXQ9UER7 740 aaPredicted RBP19.38■□□□□ 0.69
GGA3-220ENST00000613421 NACADO15069 1562 aa19.35■□□□□ 0.69
GGA3-220ENST00000613421 FBLN2P98095 1184 aa19.34■□□□□ 0.69
GGA3-220ENST00000613421 ZNF326Q5BKZ1 582 aaKnown RBP19.31■□□□□ 0.68
GGA3-220ENST00000613421 BCANQ96GW7 911 aa19.29■□□□□ 0.68
GGA3-220ENST00000613421 ARID3CA6NKF2 412 aa19.27■□□□□ 0.68
GGA3-220ENST00000613421 SLC4A1APQ9BWU0 796 aaKnown RBP19.27■□□□□ 0.68
GGA3-220ENST00000613421 EEA1Q15075 1411 aa19.24■□□□□ 0.67
GGA3-220ENST00000613421 CLIP1P30622 1438 aa19.22■□□□□ 0.67
GGA3-220ENST00000613421 CEP162Q5TB80 1403 aa19.18■□□□□ 0.66
GGA3-220ENST00000613421 GOLGA3Q08378 1498 aa19.18■□□□□ 0.66
GGA3-220ENST00000613421 CDK11AQ9UQ88 783 aaPredicted RBP19.16■□□□□ 0.66
GGA3-220ENST00000613421 TONSLQ96HA7 1378 aa19.14■□□□□ 0.65
GGA3-220ENST00000613421 WRNQ14191 1432 aaPredicted RBP eCLIP19.13■□□□□ 0.65
GGA3-220ENST00000613421 ZNF777Q9ULD5 760 aaPredicted RBP19.12■□□□□ 0.65
GGA3-220ENST00000613421 BAZ1AQ9NRL2 1556 aaPredicted RBP19.1■□□□□ 0.65
GGA3-220ENST00000613421 CLSPNQ9HAW4 1339 aa19.08■□□□□ 0.65
GGA3-220ENST00000613421 CECR2Q9BXF3 1484 aa19.08■□□□□ 0.64
GGA3-220ENST00000613421 RTL5Q5HYW3 569 aaPredicted RBP19.07■□□□□ 0.64
GGA3-220ENST00000613421 BAZ1BQ9UIG0 1483 aaKnown RBP19.06■□□□□ 0.64
GGA3-220ENST00000613421 TNIKQ9UKE5 1360 aa19.06■□□□□ 0.64
GGA3-220ENST00000613421 DDX10Q13206 875 aaKnown RBP19.01■□□□□ 0.63
GGA3-220ENST00000613421 CEP164Q9UPV0 1460 aa19■□□□□ 0.63
GGA3-220ENST00000613421 MTUS2Q5JR59 1369 aa18.98■□□□□ 0.63
GGA3-220ENST00000613421 CHIC2Q9UKJ5 165 aa18.95■□□□□ 0.62
GGA3-220ENST00000613421 MIER1Q8N108 512 aa18.92■□□□□ 0.62
GGA3-220ENST00000613421 KIF27Q86VH2 1401 aa18.91■□□□□ 0.62
GGA3-220ENST00000613421 FKBP8Q14318 412 aa18.9■□□□□ 0.62
GGA3-220ENST00000613421 MROH2BQ7Z745 1585 aa18.88■□□□□ 0.61
GGA3-220ENST00000613421 HNRNPUQ00839 825 aaKnown RBP eCLIP18.88■□□□□ 0.61
GGA3-220ENST00000613421 SCAF1Q9H7N4 1312 aaKnown RBP18.87■□□□□ 0.61
GGA3-220ENST00000613421 SOGA1O94964 1423 aa18.82■□□□□ 0.6
GGA3-220ENST00000613421 FAM9BQ8IZU0 186 aa18.8■□□□□ 0.6
GGA3-220ENST00000613421 CANXP27824 592 aaKnown RBP18.8■□□□□ 0.6
GGA3-220ENST00000613421 CCDC88BA6NC98 1476 aa18.77■□□□□ 0.6
GGA3-220ENST00000613421 HIRIP3Q9BW71 556 aaPredicted RBP18.75■□□□□ 0.59
GGA3-220ENST00000613421 CHMP7Q8WUX9 453 aaPredicted RBP18.74■□□□□ 0.59
GGA3-220ENST00000613421 RRP7BPQ9NSQ0 103 aa18.74■□□□□ 0.59
GGA3-220ENST00000613421 TSPY4P0CV99 314 aa18.74■□□□□ 0.59
GGA3-220ENST00000613421 TSPY10P0CW01 314 aa18.74■□□□□ 0.59
GGA3-220ENST00000613421 ABCC8Q09428 1581 aa18.73■□□□□ 0.59
GGA3-220ENST00000613421 ANP32AP39687 249 aaKnown RBP18.72■□□□□ 0.59
GGA3-220ENST00000613421 EIF4G2P78344 907 aaKnown RBP eCLIP18.69■□□□□ 0.58
GGA3-220ENST00000613421 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.69■□□□□ 0.582e-7■■■□□ 16.1
GGA3-220ENST00000613421 NEFMP07197 916 aa18.69■□□□□ 0.58
GGA3-220ENST00000613421 MRS2Q9HD23 443 aa18.68■□□□□ 0.58
GGA3-220ENST00000613421 ZBTB47Q9UFB7 747 aaPredicted RBP18.67■□□□□ 0.58
GGA3-220ENST00000613421 TMC1Q8TDI8 760 aa18.67■□□□□ 0.58
GGA3-220ENST00000613421 WIZO95785 1651 aa18.65■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms