Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 CTSL-201ENST00000340342 1436 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.526e-11■■■□□ 17.5
YBX3P16989 CTSL-203ENST00000343150 2177 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.446e-11■■■□□ 17.5
YBX3P16989 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.481e-7■■■□□ 17.4
YBX3P16989 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC22.27■■□□□ 1.161e-7■■■□□ 17.4
YBX3P16989 DCTD-203ENST00000500813 1829 ntTSL 221.34■■□□□ 1.011e-7■■■□□ 17.4
YBX3P16989 DCTD-208ENST00000507631 879 ntTSL 1 (best)20.59■□□□□ 0.891e-7■■■□□ 17.4
YBX3P16989 DCTD-207ENST00000507543 1874 ntTSL 516.88■□□□□ 0.291e-7■■■□□ 17.4
YBX3P16989 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.058e-9■■■□□ 17.4
YBX3P16989 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC26.33■■□□□ 1.819e-27■■■□□ 17.4
YBX3P16989 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.29e-27■■■□□ 17.4
YBX3P16989 TMSB4X-202ENST00000380635 767 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.339e-27■■■□□ 17.4
YBX3P16989 TMSB4X-204ENST00000451311 628 ntAPPRIS P1 TSL 1 (best) BASIC6.51□□□□□ -1.379e-27■■■□□ 17.4
YBX3P16989 PPP1CA-203ENST00000376745 1476 ntAPPRIS P1 TSL 1 (best) BASIC42.27■■■■■ 4.366e-9■■■□□ 17.4
YBX3P16989 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC27.06■■□□□ 1.926e-9■■■□□ 17.4
YBX3P16989 PPP1CA-201ENST00000312989 1389 ntTSL 1 (best) BASIC19.42■□□□□ 0.76e-9■■■□□ 17.4
YBX3P16989 PPP1CA-205ENST00000527663 765 ntTSL 314.75□□□□□ -0.056e-9■■■□□ 17.4
YBX3P16989 FLNB-201ENST00000295956 9463 ntAPPRIS P3 TSL 1 (best) BASIC11.13□□□□□ -0.632e-7■■■□□ 17.4
YBX3P16989 FLNB-204ENST00000429972 9430 ntAPPRIS ALT2 TSL 1 (best) BASIC11.11□□□□□ -0.632e-7■■■□□ 17.4
YBX3P16989 FLNB-202ENST00000358537 9391 ntAPPRIS ALT1 TSL 1 (best) BASIC10.42□□□□□ -0.742e-7■■■□□ 17.4
YBX3P16989 FLNB-212ENST00000490882 8079 ntAPPRIS ALT2 TSL 1 (best) BASIC9.77□□□□□ -0.852e-7■■■□□ 17.4
YBX3P16989 CACUL1-201ENST00000369151 11311 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.422e-6■■■□□ 17.4
YBX3P16989 CACUL1-207ENST00000544392 1060 ntTSL 210.18□□□□□ -0.782e-6■■■□□ 17.4
YBX3P16989 LSM4-204ENST00000594828 807 ntTSL 231.44■■■□□ 2.621e-10■■■□□ 17.4
YBX3P16989 LSM4-205ENST00000597776 446 ntTSL 214.48□□□□□ -0.091e-10■■■□□ 17.4
YBX3P16989 TUBA4A-205ENST00000427737 940 ntTSL 316.79■□□□□ 0.286e-7■■■□□ 17.4
YBX3P16989 NT5C3A-204ENST00000405342 1759 ntAPPRIS P3 TSL 1 (best) BASIC21.32■■□□□ 19e-7■■■□□ 17.4
YBX3P16989 NT5C3A-213ENST00000610140 1670 ntAPPRIS ALT1 TSL 1 (best) BASIC15.15■□□□□ 0.029e-7■■■□□ 17.4
YBX3P16989 NT5C3A-208ENST00000456458 1742 ntTSL 1 (best)14.97□□□□□ -0.019e-7■■■□□ 17.4
YBX3P16989 NT5C3A-214ENST00000620705 1704 ntTSL 1 (best) BASIC12.82□□□□□ -0.369e-7■■■□□ 17.4
YBX3P16989 NT5C3A-201ENST00000242210 1670 ntTSL 1 (best) BASIC9.11□□□□□ -0.959e-7■■■□□ 17.4
YBX3P16989 NT5C3A-203ENST00000396152 1788 ntAPPRIS P3 TSL 1 (best) BASIC8.33□□□□□ -1.089e-7■■■□□ 17.4
YBX3P16989 NT5C3A-202ENST00000381626 1909 ntAPPRIS ALT1 TSL 5 BASIC6.33□□□□□ -1.49e-7■■■□□ 17.4
YBX3P16989 PROSER2-AS1-201ENST00000445498 3146 ntTSL 2 BASIC14.53□□□□□ -0.084e-7■■■□□ 17.4
YBX3P16989 MFF-221ENST00000489696 639 ntTSL 326.05■■□□□ 1.768e-13■■■□□ 17.4
YBX3P16989 MFF-214ENST00000452930 736 ntTSL 424.09■■□□□ 1.458e-13■■■□□ 17.4
YBX3P16989 MFF-217ENST00000470090 597 ntTSL 220.86■□□□□ 0.938e-13■■■□□ 17.4
YBX3P16989 ZNF444-210ENST00000592171 688 ntTSL 330.01■■■□□ 2.394e-6■■■□□ 17.4
YBX3P16989 ZNF444-211ENST00000592949 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC26.13■■□□□ 1.774e-6■■■□□ 17.4
YBX3P16989 ZNF444-206ENST00000587664 568 ntTSL 324.62■■□□□ 1.534e-6■■■□□ 17.4
YBX3P16989 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC23.18■■□□□ 1.34e-6■■■□□ 17.4
YBX3P16989 ZNF444-204ENST00000587236 5565 ntTSL 216.33■□□□□ 0.24e-6■■■□□ 17.4
YBX3P16989 FRAS1-207ENST00000512123 15624 ntAPPRIS P1 TSL 5 BASIC5.65□□□□□ -1.54e-6■■■□□ 17.4
YBX3P16989 C2orf42-212ENST00000470096 579 ntTSL 421.99■■□□□ 1.113e-6■■■□□ 17.4
YBX3P16989 TIA1-203ENST00000415783 4633 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.583e-6■■■□□ 17.4
YBX3P16989 TIA1-205ENST00000433529 4647 ntTSL 2 BASIC11.16□□□□□ -0.623e-6■■■□□ 17.4
YBX3P16989 AC004148.2-201ENST00000575890 1938 ntTSL 5 BASIC8.85□□□□□ -0.996e-7■■■□□ 17.4
YBX3P16989 TIA1-201ENST00000282574 3823 ntTSL 5 BASIC7.76□□□□□ -1.173e-6■■■□□ 17.4
YBX3P16989 RPL31-210ENST00000441435 717 ntTSL 27.96□□□□□ -1.143e-8■■■□□ 17.4
YBX3P16989 MCM4-206ENST00000519138 927 ntTSL 216.92■□□□□ 0.32e-12■■■□□ 17.4
YBX3P16989 MCM4-207ENST00000519170 734 ntTSL 315.79■□□□□ 0.122e-12■■■□□ 17.4
YBX3P16989 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC27.5■■□□□ 1.993e-11■■■□□ 17.4
YBX3P16989 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC26.15■■□□□ 1.783e-11■■■□□ 17.4
YBX3P16989 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC26.03■■□□□ 1.763e-11■■■□□ 17.4
YBX3P16989 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC25.81■■□□□ 1.723e-11■■■□□ 17.4
YBX3P16989 RAP1B-228ENST00000542145 1060 ntTSL 2 BASIC25.52■■□□□ 1.683e-11■■■□□ 17.4
YBX3P16989 RAP1B-210ENST00000463493 781 ntTSL 423.86■■□□□ 1.413e-11■■■□□ 17.4
YBX3P16989 RAP1B-216ENST00000537460 1072 ntAPPRIS P1 TSL 5 BASIC18.55■□□□□ 0.563e-11■■■□□ 17.4
YBX3P16989 RAP1B-230ENST00000543697 734 ntTSL 3 BASIC10.37□□□□□ -0.753e-11■■■□□ 17.4
YBX3P16989 CCNB1-201ENST00000256442 2169 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 07e-11■■■□□ 17.4
YBX3P16989 CCNB1-203ENST00000505500 1190 ntTSL 1 (best)10.08□□□□□ -0.87e-11■■■□□ 17.4
YBX3P16989 CCNB1-207ENST00000513102 463 ntTSL 27.25□□□□□ -1.257e-11■■■□□ 17.4
YBX3P16989 CCNB1-205ENST00000507798 767 ntTSL 36.9□□□□□ -1.37e-11■■■□□ 17.4
YBX3P16989 MS4A3-202ENST00000358152 1516 ntTSL 5 BASIC12.99□□□□□ -0.333e-7■■■□□ 17.4
YBX3P16989 MS4A3-201ENST00000278865 1613 ntAPPRIS P1 TSL 1 (best) BASIC9.79□□□□□ -0.843e-7■■■□□ 17.4
YBX3P16989 WDR43-202ENST00000407426 3533 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.292e-7■■■□□ 17.4
YBX3P16989 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC24.26■■□□□ 1.471e-6■■■□□ 17.4
YBX3P16989 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC22.05■■□□□ 1.121e-6■■■□□ 17.4
YBX3P16989 NAA10-207ENST00000460996 908 ntTSL 223.63■■□□□ 1.372e-7■■■□□ 17.4
YBX3P16989 SMG1-202ENST00000446231 16115 ntAPPRIS P1 TSL 1 (best) BASIC7.87□□□□□ -1.152e-6■■■□□ 17.4
YBX3P16989 POLR2I-205ENST00000589069 582 ntTSL 217.75■□□□□ 0.431e-8■■■□□ 17.3
YBX3P16989 PCTP-205ENST00000572536 647 ntTSL 39.96□□□□□ -0.821e-6■■■□□ 17.3
YBX3P16989 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.615e-7■■■□□ 17.3
YBX3P16989 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.415e-7■■■□□ 17.3
YBX3P16989 AC007040.2-202ENST00000453130 423 ntTSL 310.44□□□□□ -0.745e-7■■■□□ 17.3
YBX3P16989 NSFL1C-203ENST00000381653 1446 ntTSL 527.77■■■□□ 2.045e-7■■■□□ 17.3
YBX3P16989 PHF19-201ENST00000312189 836 ntTSL 1 (best) BASIC22.85■■□□□ 1.252e-8■■■□□ 17.3
YBX3P16989 UBE3A-220ENST00000630424 5075 ntAPPRIS P3 TSL 5 BASIC14.51□□□□□ -0.091e-6■■■□□ 17.3
YBX3P16989 BRD2-206ENST00000456339 887 ntTSL 420.67■□□□□ 0.96e-10■■■□□ 17.3
YBX3P16989 MRPL35-204ENST00000605125 833 ntTSL 2 BASIC15.05■□□□□ -02e-7■■■□□ 17.3
YBX3P16989 ANKMY2-202ENST00000421746 591 ntTSL 422.28■■□□□ 1.169e-7■■■□□ 17.3
YBX3P16989 TP53BP1-210ENST00000450115 6179 ntAPPRIS ALT2 TSL 1 (best) BASIC10.69□□□□□ -0.72e-7■■■□□ 17.3
YBX3P16989 TP53BP1-216ENST00000572085 5574 ntTSL 210.23□□□□□ -0.772e-7■■■□□ 17.3
YBX3P16989 TP53BP1-201ENST00000263801 6346 ntAPPRIS P3 TSL 1 (best) BASIC8.88□□□□□ -0.992e-7■■■□□ 17.3
YBX3P16989 TP53BP1-203ENST00000382044 10384 ntAPPRIS ALT2 TSL 1 (best) BASIC8.65□□□□□ -1.032e-7■■■□□ 17.3
YBX3P16989 TP53BP1-202ENST00000382039 6015 ntTSL 5 BASIC8□□□□□ -1.132e-7■■■□□ 17.3
YBX3P16989 AL590867.2-201ENST00000492974 447 ntBASIC11.32□□□□□ -0.67e-22■■■□□ 17.3
YBX3P16989 FAM129B-207ENST00000484348 654 ntTSL 1 (best)31.03■■■□□ 2.562e-7■■■□□ 17.3
YBX3P16989 FAM129B-204ENST00000468379 828 ntTSL 320.96■□□□□ 0.952e-7■■■□□ 17.3
YBX3P16989 FAM129B-206ENST00000478917 362 ntTSL 518.22■□□□□ 0.512e-7■■■□□ 17.3
YBX3P16989 FAM129B-201ENST00000373312 3957 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.332e-7■■■□□ 17.3
YBX3P16989 FAM129B-202ENST00000373314 3760 ntTSL 1 (best) BASIC14.49□□□□□ -0.092e-7■■■□□ 17.3
YBX3P16989 MTA1-209ENST00000469140 1666 ntTSL 527.89■■■□□ 2.062e-7■■■□□ 17.3
YBX3P16989 MTA1-206ENST00000434050 2050 ntTSL 1 (best)21.28■■□□□ 12e-7■■■□□ 17.3
YBX3P16989 ARL16-208ENST00000573569 786 ntTSL 237.21■■■■□ 3.554e-6■■■□□ 17.3
YBX3P16989 ARL16-209ENST00000573715 763 ntTSL 3 BASIC28.25■■■□□ 2.114e-6■■■□□ 17.3
YBX3P16989 ARL16-211ENST00000576135 694 ntTSL 3 BASIC28.25■■■□□ 2.114e-6■■■□□ 17.3
YBX3P16989 ARL16-202ENST00000570561 768 ntTSL 2 BASIC21.36■■□□□ 1.014e-6■■■□□ 17.3
YBX3P16989 ARL16-210ENST00000574938 751 ntTSL 2 BASIC20.82■□□□□ 0.921e-7■■■□□ 17.3
YBX3P16989 GRB10-221ENST00000483819 657 ntTSL 229.26■■■□□ 2.271e-6■■■□□ 17.3
YBX3P16989 GRB10-216ENST00000470992 544 ntTSL 415.31■□□□□ 0.041e-6■■■□□ 17.3
Retrieved 100 of 29,075 protein–RNA pairs in 281.2 ms