RNA–Protein interactions for RNA: ENST00000597776.1

LSM4-205, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 446 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-205ENST00000597776 NISCHQ9Y2I1 1504 aa26.44■■□□□ 1.82
LSM4-205ENST00000597776 ABCC9O60706 1549 aa23.74■■□□□ 1.39
LSM4-205ENST00000597776 CCDC180Q9P1Z9 1646 aa23.69■■□□□ 1.38
LSM4-205ENST00000597776 RB1CC1Q8TDY2 1594 aa22.55■■□□□ 1.2
LSM4-205ENST00000597776 NACADO15069 1562 aa22.39■■□□□ 1.18
LSM4-205ENST00000597776 DCAF8L2P0C7V8 631 aa22.32■■□□□ 1.16
LSM4-205ENST00000597776 DNAJC5BQ9UF47 199 aa22.25■■□□□ 1.15
LSM4-205ENST00000597776 PABPN1Q86U42 306 aaKnown RBP eCLIP22.1■■□□□ 1.13
LSM4-205ENST00000597776 MYO15BQ96JP2 1530 aa22.06■■□□□ 1.12
LSM4-205ENST00000597776 UNC13AQ9UPW8 1703 aa22.06■■□□□ 1.12
LSM4-205ENST00000597776 BICRAQ9NZM4 1560 aa21.92■■□□□ 1.1
LSM4-205ENST00000597776 ZCCHC6Q5VYS8 1495 aaKnown RBP21.92■■□□□ 1.1
LSM4-205ENST00000597776 DCAF1Q9Y4B6 1507 aa21.8■■□□□ 1.08
LSM4-205ENST00000597776 SCRIBQ14160 1630 aa21.65■■□□□ 1.06
LSM4-205ENST00000597776 SHROOM4Q9ULL8 1493 aa21.57■■□□□ 1.04
LSM4-205ENST00000597776 CC2D2AQ9P2K1 1620 aa21.42■■□□□ 1.02
LSM4-205ENST00000597776 EIF4G1Q04637 1599 aaKnown RBP21.37■■□□□ 1.01
LSM4-205ENST00000597776 CECR2Q9BXF3 1484 aa21.35■■□□□ 1.01
LSM4-205ENST00000597776 NCAPD3P42695 1498 aa20.68■□□□□ 0.9
LSM4-205ENST00000597776 ATAD2BQ9ULI0 1458 aa20.63■□□□□ 0.89
LSM4-205ENST00000597776 SMARCA4P51532 1647 aa20.62■□□□□ 0.89
LSM4-205ENST00000597776 SMARCA2P51531 1590 aa20.56■□□□□ 0.88
LSM4-205ENST00000597776 HMGXB3Q12766 1538 aa20.53■□□□□ 0.88
LSM4-205ENST00000597776 BAZ1AQ9NRL2 1556 aaPredicted RBP20.51■□□□□ 0.87
LSM4-205ENST00000597776 ERCC6Q03468 1493 aa20.47■□□□□ 0.87
LSM4-205ENST00000597776 BAZ1BQ9UIG0 1483 aaKnown RBP20.44■□□□□ 0.86
LSM4-205ENST00000597776 CUX2O14529 1486 aa20.4■□□□□ 0.86
LSM4-205ENST00000597776 NESP48681 1621 aa20.4■□□□□ 0.86
LSM4-205ENST00000597776 PEG3Q9GZU2 1588 aa20.4■□□□□ 0.86
LSM4-205ENST00000597776 MROH2BQ7Z745 1585 aa20.39■□□□□ 0.85
LSM4-205ENST00000597776 DNAJC5Q9H3Z4 198 aa20.37■□□□□ 0.85
LSM4-205ENST00000597776 LAMC3Q9Y6N6 1575 aa20.21■□□□□ 0.83
LSM4-205ENST00000597776 THOC2Q8NI27 1593 aaKnown RBP20.17■□□□□ 0.82
LSM4-205ENST00000597776 WIZO95785 1651 aa20.15■□□□□ 0.82
LSM4-205ENST00000597776 KIF21AQ7Z4S6 1674 aa20.12■□□□□ 0.81
LSM4-205ENST00000597776 PDS5BQ9NTI5 1447 aa20.09■□□□□ 0.81
LSM4-205ENST00000597776 CADPSQ9ULU8 1353 aa20.05■□□□□ 0.8
LSM4-205ENST00000597776 RSF1Q96T23 1441 aaPredicted RBP19.96■□□□□ 0.79
LSM4-205ENST00000597776 MRC2Q9UBG0 1479 aa19.93■□□□□ 0.78
LSM4-205ENST00000597776 WDR62O43379 1518 aa19.88■□□□□ 0.77
LSM4-205ENST00000597776 TOP2AP11388 1531 aaKnown RBP19.88■□□□□ 0.77
LSM4-205ENST00000597776 CEP164Q9UPV0 1460 aa19.86■□□□□ 0.77
LSM4-205ENST00000597776 FANCD2Q9BXW9 1451 aa19.85■□□□□ 0.77
LSM4-205ENST00000597776 CFTRP13569 1480 aa19.83■□□□□ 0.76
LSM4-205ENST00000597776 URB2Q14146 1524 aaKnown RBP19.7■□□□□ 0.74
LSM4-205ENST00000597776 CCDC88BA6NC98 1476 aa19.67■□□□□ 0.74
LSM4-205ENST00000597776 PRDM2Q13029 1718 aa19.62■□□□□ 0.73
LSM4-205ENST00000597776 TRIM41Q8WV44 630 aa19.53■□□□□ 0.72
LSM4-205ENST00000597776 TOPBP1Q92547 1522 aa19.47■□□□□ 0.71
LSM4-205ENST00000597776 OSCARQ8IYS5 282 aa19.46■□□□□ 0.71
LSM4-205ENST00000597776 ZNF608Q9ULD9 1512 aaPredicted RBP19.46■□□□□ 0.71
LSM4-205ENST00000597776 IFT140Q96RY7 1462 aa19.45■□□□□ 0.7
LSM4-205ENST00000597776 DNMBPQ6XZF7 1577 aa19.4■□□□□ 0.7
LSM4-205ENST00000597776 ABCC8Q09428 1581 aa19.38■□□□□ 0.69
LSM4-205ENST00000597776 EIF4G3O43432 1585 aaKnown RBP19.34■□□□□ 0.69
LSM4-205ENST00000597776 TARBP1Q13395 1621 aaKnown RBP19.3■□□□□ 0.68
LSM4-205ENST00000597776 AQRO60306 1485 aaKnown RBP eCLIP19.28■□□□□ 0.686e-8■■□□□ 12.9
LSM4-205ENST00000597776 POLA1P09884 1462 aaPredicted RBP19.28■□□□□ 0.68
LSM4-205ENST00000597776 RIMBP3CA6NJZ7 1639 aa19.25■□□□□ 0.67
LSM4-205ENST00000597776 RIMBP3BA6NNM3 1639 aa19.25■□□□□ 0.67
LSM4-205ENST00000597776 RIMBP3Q9UFD9 1639 aa19.25■□□□□ 0.67
LSM4-205ENST00000597776 RAD54L2Q9Y4B4 1467 aa19.22■□□□□ 0.67
LSM4-205ENST00000597776 CHD1O14646 1710 aa19.19■□□□□ 0.66
LSM4-205ENST00000597776 SOGA1O94964 1423 aa19.18■□□□□ 0.66
LSM4-205ENST00000597776 ARHGEF11O15085 1522 aa19.18■□□□□ 0.66
LSM4-205ENST00000597776 FGD5Q6ZNL6 1462 aa19.16■□□□□ 0.66
LSM4-205ENST00000597776 CUX1P39880 1505 aa19.16■□□□□ 0.66
LSM4-205ENST00000597776 TDRD9Q8NDG6 1382 aaKnown RBP19.16■□□□□ 0.66
LSM4-205ENST00000597776 FBLN2P98095 1184 aa19.14■□□□□ 0.65
LSM4-205ENST00000597776 SUPT5HO00267 1087 aaKnown RBP19.11■□□□□ 0.65
LSM4-205ENST00000597776 SNAPC4Q5SXM2 1469 aa19.09■□□□□ 0.65
LSM4-205ENST00000597776 WDR97A6NE52 1622 aa19.06■□□□□ 0.64
LSM4-205ENST00000597776 CYB5RLQ6IPT4 315 aa19.04■□□□□ 0.64
LSM4-205ENST00000597776 ARAP1Q96P48 1450 aa19.02■□□□□ 0.63
LSM4-205ENST00000597776 GRIN2BQ13224 1484 aa19.01■□□□□ 0.63
LSM4-205ENST00000597776 MAGI1Q96QZ7 1491 aaPredicted RBP19■□□□□ 0.63
LSM4-205ENST00000597776 CHMP7Q8WUX9 453 aaPredicted RBP18.98■□□□□ 0.63
LSM4-205ENST00000597776 CLASP1Q7Z460 1538 aa18.97■□□□□ 0.63
LSM4-205ENST00000597776 SYNJ2O15056 1496 aa18.95■□□□□ 0.62
LSM4-205ENST00000597776 GAPVD1Q14C86 1478 aa18.95■□□□□ 0.62
LSM4-205ENST00000597776 PBRM1Q86U86 1689 aa18.95■□□□□ 0.62
LSM4-205ENST00000597776 SYNJ1O43426 1573 aa18.93■□□□□ 0.62
LSM4-205ENST00000597776 ABCA10Q8WWZ4 1543 aa18.93■□□□□ 0.62
LSM4-205ENST00000597776 ABCA5Q8WWZ7 1642 aa18.92■□□□□ 0.62
LSM4-205ENST00000597776 WRNQ14191 1432 aaPredicted RBP eCLIP18.85■□□□□ 0.61
LSM4-205ENST00000597776 TOP2BQ02880 1626 aa18.83■□□□□ 0.61
LSM4-205ENST00000597776 BIVM-ERCC5R4GMW8 1640 aa18.83■□□□□ 0.61
LSM4-205ENST00000597776 TRHP20396 242 aaPredicted RBP18.82■□□□□ 0.6
LSM4-205ENST00000597776 GRIN2AQ12879 1464 aa18.77■□□□□ 0.6
LSM4-205ENST00000597776 ADAMTS12P58397 1594 aa18.77■□□□□ 0.6
LSM4-205ENST00000597776 CEP170Q5SW79 1584 aa18.72■□□□□ 0.59
LSM4-205ENST00000597776 NUP160Q12769 1436 aa18.71■□□□□ 0.59
LSM4-205ENST00000597776 ERCC6L2Q5T890 1561 aa18.71■□□□□ 0.59
LSM4-205ENST00000597776 FHAD1B1AJZ9 1412 aa18.7■□□□□ 0.58
LSM4-205ENST00000597776 ERICH3Q5RHP9 1530 aa18.69■□□□□ 0.58
LSM4-205ENST00000597776 SHROOM2Q13796 1616 aa18.61■□□□□ 0.57
LSM4-205ENST00000597776 PRG4Q92954 1404 aaPredicted RBP18.53■□□□□ 0.56
LSM4-205ENST00000597776 RUSC2Q8N2Y8 1516 aa18.52■□□□□ 0.56
LSM4-205ENST00000597776 JPH4Q96JJ6 628 aa18.5■□□□□ 0.55
LSM4-205ENST00000597776 IGF1RP08069 1367 aa18.46■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms