RNA–Protein interactions for RNA: ENST00000594828.7

LSM4-204, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 807 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-204ENST00000594828 NISCHQ9Y2I1 1504 aa57.98■■■■■ 6.87
LSM4-204ENST00000594828 CCDC180Q9P1Z9 1646 aa51.77■■■■■ 5.88
LSM4-204ENST00000594828 ABCC9O60706 1549 aa51.39■■■■■ 5.82
LSM4-204ENST00000594828 RB1CC1Q8TDY2 1594 aa49.11■■■■■ 5.45
LSM4-204ENST00000594828 NACADO15069 1562 aa48.89■■■■■ 5.42
LSM4-204ENST00000594828 DCAF8L2P0C7V8 631 aa48.88■■■■■ 5.42
LSM4-204ENST00000594828 MYO15BQ96JP2 1530 aa48.36■■■■■ 5.33
LSM4-204ENST00000594828 ZCCHC6Q5VYS8 1495 aaKnown RBP48.12■■■■■ 5.29
LSM4-204ENST00000594828 PABPN1Q86U42 306 aaKnown RBP eCLIP47.98■■■■■ 5.27
LSM4-204ENST00000594828 UNC13AQ9UPW8 1703 aa47.93■■■■■ 5.26
LSM4-204ENST00000594828 DCAF1Q9Y4B6 1507 aa47.91■■■■■ 5.26
LSM4-204ENST00000594828 DNAJC5BQ9UF47 199 aa47.84■■■■■ 5.25
LSM4-204ENST00000594828 BICRAQ9NZM4 1560 aa47.62■■■■■ 5.21
LSM4-204ENST00000594828 SCRIBQ14160 1630 aa47.23■■■■■ 5.15
LSM4-204ENST00000594828 SHROOM4Q9ULL8 1493 aa47.04■■■■■ 5.12
LSM4-204ENST00000594828 EIF4G1Q04637 1599 aaKnown RBP46.43■■■■■ 5.02
LSM4-204ENST00000594828 CC2D2AQ9P2K1 1620 aa46.43■■■■■ 5.02
LSM4-204ENST00000594828 CECR2Q9BXF3 1484 aa46.25■■■■■ 5
LSM4-204ENST00000594828 NCAPD3P42695 1498 aa45.15■■■■■ 4.82
LSM4-204ENST00000594828 SMARCA4P51532 1647 aa45.1■■■■■ 4.81
LSM4-204ENST00000594828 ATAD2BQ9ULI0 1458 aa45.07■■■■■ 4.81
LSM4-204ENST00000594828 BAZ1AQ9NRL2 1556 aaPredicted RBP44.98■■■■■ 4.79
LSM4-204ENST00000594828 SMARCA2P51531 1590 aa44.96■■■■■ 4.79
LSM4-204ENST00000594828 HMGXB3Q12766 1538 aa44.81■■■■■ 4.76
LSM4-204ENST00000594828 MROH2BQ7Z745 1585 aa44.68■■■■■ 4.74
LSM4-204ENST00000594828 BAZ1BQ9UIG0 1483 aaKnown RBP44.66■■■■■ 4.74
LSM4-204ENST00000594828 PEG3Q9GZU2 1588 aa44.66■■■■■ 4.74
LSM4-204ENST00000594828 ERCC6Q03468 1493 aa44.35■■■■■ 4.69
LSM4-204ENST00000594828 NESP48681 1621 aa44.27■■■■■ 4.68
LSM4-204ENST00000594828 WIZO95785 1651 aa44.16■■■■■ 4.66
LSM4-204ENST00000594828 CUX2O14529 1486 aa44.08■■■■■ 4.65
LSM4-204ENST00000594828 LAMC3Q9Y6N6 1575 aa44.03■■■■■ 4.64
LSM4-204ENST00000594828 RSF1Q96T23 1441 aaPredicted RBP43.95■■■■■ 4.63
LSM4-204ENST00000594828 CADPSQ9ULU8 1353 aa43.82■■■■■ 4.61
LSM4-204ENST00000594828 PDS5BQ9NTI5 1447 aa43.82■■■■■ 4.6
LSM4-204ENST00000594828 THOC2Q8NI27 1593 aaKnown RBP43.67■■■■■ 4.58
LSM4-204ENST00000594828 KIF21AQ7Z4S6 1674 aa43.67■■■■■ 4.58
LSM4-204ENST00000594828 TOP2AP11388 1531 aaKnown RBP43.63■■■■■ 4.57
LSM4-204ENST00000594828 DNAJC5Q9H3Z4 198 aa43.61■■■■■ 4.57
LSM4-204ENST00000594828 CFTRP13569 1480 aa43.39■■■■■ 4.54
LSM4-204ENST00000594828 MRC2Q9UBG0 1479 aa43.37■■■■■ 4.53
LSM4-204ENST00000594828 FANCD2Q9BXW9 1451 aa43.3■■■■■ 4.52
LSM4-204ENST00000594828 CEP164Q9UPV0 1460 aa43.29■■■■■ 4.52
LSM4-204ENST00000594828 WDR62O43379 1518 aa43.22■■■■■ 4.51
LSM4-204ENST00000594828 CCDC88BA6NC98 1476 aa43.17■■■■■ 4.5
LSM4-204ENST00000594828 PRDM2Q13029 1718 aa42.91■■■■■ 4.46
LSM4-204ENST00000594828 URB2Q14146 1524 aaKnown RBP42.89■■■■■ 4.46
LSM4-204ENST00000594828 TOPBP1Q92547 1522 aa42.51■■■■■ 4.4
LSM4-204ENST00000594828 ABCC8Q09428 1581 aa42.49■■■■■ 4.39
LSM4-204ENST00000594828 SUPT5HO00267 1087 aaKnown RBP42.44■■■■■ 4.38
LSM4-204ENST00000594828 IFT140Q96RY7 1462 aa42.42■■■■■ 4.38
LSM4-204ENST00000594828 DNMBPQ6XZF7 1577 aa42.39■■■■■ 4.38
LSM4-204ENST00000594828 ZNF608Q9ULD9 1512 aaPredicted RBP42.29■■■■■ 4.36
LSM4-204ENST00000594828 OSCARQ8IYS5 282 aa42.26■■■■■ 4.36
LSM4-204ENST00000594828 POLA1P09884 1462 aaPredicted RBP42.11■■■■■ 4.33
LSM4-204ENST00000594828 TARBP1Q13395 1621 aaKnown RBP42.07■■■■■ 4.33
LSM4-204ENST00000594828 EIF4G3O43432 1585 aaKnown RBP42.04■■■■■ 4.32
LSM4-204ENST00000594828 AQRO60306 1485 aaKnown RBP eCLIP42■■■■■ 4.315e-8■■□□□ 13.7
LSM4-204ENST00000594828 SOGA1O94964 1423 aa41.98■■■■■ 4.31
LSM4-204ENST00000594828 RAD54L2Q9Y4B4 1467 aa41.98■■■■■ 4.31
LSM4-204ENST00000594828 CUX1P39880 1505 aa41.95■■■■■ 4.31
LSM4-204ENST00000594828 FGD5Q6ZNL6 1462 aa41.92■■■■■ 4.3
LSM4-204ENST00000594828 TRIM41Q8WV44 630 aa41.91■■■■■ 4.3
LSM4-204ENST00000594828 TDRD9Q8NDG6 1382 aaKnown RBP41.84■■■■■ 4.29
LSM4-204ENST00000594828 FBLN2P98095 1184 aa41.7■■■■■ 4.27
LSM4-204ENST00000594828 WDR97A6NE52 1622 aa41.68■■■■■ 4.26
LSM4-204ENST00000594828 CHD1O14646 1710 aa41.64■■■■■ 4.26
LSM4-204ENST00000594828 SNAPC4Q5SXM2 1469 aa41.56■■■■■ 4.24
LSM4-204ENST00000594828 RIMBP3CA6NJZ7 1639 aa41.54■■■■■ 4.24
LSM4-204ENST00000594828 RIMBP3BA6NNM3 1639 aa41.54■■■■■ 4.24
LSM4-204ENST00000594828 RIMBP3Q9UFD9 1639 aa41.54■■■■■ 4.24
LSM4-204ENST00000594828 GRIN2BQ13224 1484 aa41.53■■■■■ 4.24
LSM4-204ENST00000594828 MAGI1Q96QZ7 1491 aaPredicted RBP41.47■■■■■ 4.23
LSM4-204ENST00000594828 CHMP7Q8WUX9 453 aaPredicted RBP41.47■■■■■ 4.23
LSM4-204ENST00000594828 ARHGEF11O15085 1522 aa41.47■■■■■ 4.23
LSM4-204ENST00000594828 ABCA10Q8WWZ4 1543 aa41.47■■■■■ 4.23
LSM4-204ENST00000594828 WRNQ14191 1432 aaPredicted RBP eCLIP41.46■■■■■ 4.23
LSM4-204ENST00000594828 GAPVD1Q14C86 1478 aa41.46■■■■■ 4.23
LSM4-204ENST00000594828 TOP2BQ02880 1626 aa41.39■■■■■ 4.22
LSM4-204ENST00000594828 BIVM-ERCC5R4GMW8 1640 aa41.36■■■■■ 4.21
LSM4-204ENST00000594828 SYNJ1O43426 1573 aa41.35■■■■■ 4.21
LSM4-204ENST00000594828 SYNJ2O15056 1496 aa41.34■■■■■ 4.21
LSM4-204ENST00000594828 PBRM1Q86U86 1689 aa41.33■■■■■ 4.21
LSM4-204ENST00000594828 ABCA5Q8WWZ7 1642 aa41.32■■■■■ 4.2
LSM4-204ENST00000594828 CYB5RLQ6IPT4 315 aa41.23■■■■■ 4.19
LSM4-204ENST00000594828 CLASP1Q7Z460 1538 aa41.18■■■■■ 4.18
LSM4-204ENST00000594828 ARAP1Q96P48 1450 aa41.09■■■■■ 4.17
LSM4-204ENST00000594828 GRIN2AQ12879 1464 aa40.98■■■■■ 4.15
LSM4-204ENST00000594828 ADAMTS12P58397 1594 aa40.98■■■■■ 4.15
LSM4-204ENST00000594828 ERICH3Q5RHP9 1530 aa40.96■■■■■ 4.15
LSM4-204ENST00000594828 FHAD1B1AJZ9 1412 aa40.95■■■■■ 4.15
LSM4-204ENST00000594828 NUP160Q12769 1436 aa40.83■■■■■ 4.13
LSM4-204ENST00000594828 CEP170Q5SW79 1584 aa40.79■■■■■ 4.12
LSM4-204ENST00000594828 KIF27Q86VH2 1401 aa40.66■■■■■ 4.1
LSM4-204ENST00000594828 TRHP20396 242 aaPredicted RBP40.65■■■■■ 4.1
LSM4-204ENST00000594828 IGF1RP08069 1367 aa40.6■■■■■ 4.09
LSM4-204ENST00000594828 ERCC6L2Q5T890 1561 aa40.59■■■■■ 4.09
LSM4-204ENST00000594828 SHROOM2Q13796 1616 aa40.56■■■■■ 4.08
LSM4-204ENST00000594828 JPH4Q96JJ6 628 aa40.5■■■■■ 4.07
LSM4-204ENST00000594828 PRG4Q92954 1404 aaPredicted RBP40.43■■■■■ 4.06
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms