Protein–RNA interactions for Protein: Q01081

U2AF1, Splicing factor U2AF 35 kDa subunit, humanhuman

Known RBP eCLIP

Length 240 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
U2AF1Q01081 METTL9-211ENST00000615720 2890 ntTSL 2 BASIC8.27□□□□□ -1.091e-12■■□□□ 14.4
U2AF1Q01081 METTL9-207ENST00000567404 763 ntTSL 38.08□□□□□ -1.121e-12■■□□□ 14.4
U2AF1Q01081 METTL9-209ENST00000569290 480 ntTSL 27.78□□□□□ -1.161e-12■■□□□ 14.4
U2AF1Q01081 SRRM1-202ENST00000374389 3110 ntAPPRIS ALT2 TSL 5 BASIC6.94□□□□□ -1.31e-12■■□□□ 14.4
U2AF1Q01081 METTL9-204ENST00000562961 785 ntTSL 26.29□□□□□ -1.41e-12■■□□□ 14.4
U2AF1Q01081 METTL9-208ENST00000568826 376 ntTSL 35.09□□□□□ -1.591e-12■■□□□ 14.4
U2AF1Q01081 SRRM1-211ENST00000478890 480 ntTSL 31.71□□□□□ -2.141e-12■■□□□ 14.4
U2AF1Q01081 EML4-205ENST00000409040 962 ntTSL 1 (best)22.54■■□□□ 1.21e-6■■□□□ 14.4
U2AF1Q01081 SLC39A14-205ENST00000517370 839 ntTSL 317.8■□□□□ 0.447e-8■■□□□ 14.4
U2AF1Q01081 ERBB3-219ENST00000551242 2755 ntTSL 1 (best)15.22■□□□□ 0.034e-6■■□□□ 14.4
U2AF1Q01081 ERBB3-201ENST00000267101 5919 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.124e-6■■□□□ 14.4
U2AF1Q01081 ERBB3-217ENST00000551085 4382 ntTSL 214.19□□□□□ -0.144e-6■■□□□ 14.4
U2AF1Q01081 ERBB3-203ENST00000415288 4353 ntTSL 2 BASIC11.36□□□□□ -0.594e-6■■□□□ 14.4
U2AF1Q01081 PTBP1-207ENST00000585932 1030 ntTSL 327.95■■■□□ 2.069e-17■■□□□ 14.4
U2AF1Q01081 PTBP1-219ENST00000621737 1125 ntTSL 526.34■■□□□ 1.819e-17■■□□□ 14.4
U2AF1Q01081 PTBP1-208ENST00000585956 767 ntTSL 326.2■■□□□ 1.789e-17■■□□□ 14.4
U2AF1Q01081 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC24.62■■□□□ 1.539e-17■■□□□ 14.4
U2AF1Q01081 PTBP1-210ENST00000586944 4661 ntTSL 222.38■■□□□ 1.179e-17■■□□□ 14.4
U2AF1Q01081 PTBP1-202ENST00000350092 3069 ntAPPRIS ALT1 TSL 1 (best) BASIC20.13■□□□□ 0.819e-17■■□□□ 14.4
U2AF1Q01081 PTBP1-204ENST00000394601 3185 ntTSL 1 (best) BASIC19.93■□□□□ 0.789e-17■■□□□ 14.4
U2AF1Q01081 PTBP1-203ENST00000356948 3598 ntAPPRIS ALT1 TSL 1 (best) BASIC19.72■□□□□ 0.759e-17■■□□□ 14.4
U2AF1Q01081 PTBP1-201ENST00000349038 3155 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.599e-17■■□□□ 14.4
U2AF1Q01081 PTBP1-221ENST00000635647 3691 ntTSL 5 BASIC18.65■□□□□ 0.589e-17■■□□□ 14.4
U2AF1Q01081 PTBP1-213ENST00000587191 357 ntTSL 515.47■□□□□ 0.079e-17■■□□□ 14.4
U2AF1Q01081 PTBP1-205ENST00000585535 314 ntTSL 315.3■□□□□ 0.049e-17■■□□□ 14.4
U2AF1Q01081 HP1BP3-203ENST00000375003 4822 ntTSL 1 (best) BASIC9.01□□□□□ -0.974e-10■■□□□ 14.4
U2AF1Q01081 GK-204ENST00000378945 2063 ntAPPRIS P3 TSL 1 (best) BASIC19.54■□□□□ 0.725e-7■■□□□ 14.4
U2AF1Q01081 GK-205ENST00000378946 3638 ntTSL 1 (best) BASIC18.27■□□□□ 0.525e-7■■□□□ 14.4
U2AF1Q01081 GK-203ENST00000378943 3707 ntAPPRIS ALT1 TSL 1 (best) BASIC18■□□□□ 0.475e-7■■□□□ 14.4
U2AF1Q01081 GK-210ENST00000481024 2401 ntTSL 216.77■□□□□ 0.285e-7■■□□□ 14.4
U2AF1Q01081 GK-207ENST00000427190 4573 ntTSL 5 BASIC16.38■□□□□ 0.215e-7■■□□□ 14.4
U2AF1Q01081 SRSF1-203ENST00000581497 438 ntTSL 310.43□□□□□ -0.747e-9■■□□□ 14.4
U2AF1Q01081 GSR-206ENST00000546342 1482 ntAPPRIS ALT2 TSL 1 (best) BASIC33.79■■■■□ 38e-8■■□□□ 14.3
U2AF1Q01081 GSR-205ENST00000541648 1410 ntTSL 1 (best) BASIC33.53■■■□□ 2.968e-8■■□□□ 14.3
U2AF1Q01081 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC29■■■□□ 2.238e-8■■□□□ 14.3
U2AF1Q01081 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC21.03■□□□□ 0.968e-8■■□□□ 14.3
U2AF1Q01081 GSR-203ENST00000523295 913 ntTSL 318.5■□□□□ 0.558e-8■■□□□ 14.3
U2AF1Q01081 GSR-202ENST00000521479 582 ntTSL 313.34□□□□□ -0.278e-8■■□□□ 14.3
U2AF1Q01081 WAC-211ENST00000442148 759 ntTSL 525.88■■□□□ 1.733e-7■■□□□ 14.3
U2AF1Q01081 WAC-205ENST00000375664 5924 ntTSL 1 (best) BASIC23.78■■□□□ 1.43e-7■■□□□ 14.3
U2AF1Q01081 WAC-202ENST00000347934 2839 ntTSL 5 BASIC21.84■■□□□ 1.093e-7■■□□□ 14.3
U2AF1Q01081 WAC-203ENST00000354911 3042 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.743e-7■■□□□ 14.3
U2AF1Q01081 WAC-207ENST00000420266 784 ntTSL 518.59■□□□□ 0.573e-7■■□□□ 14.3
U2AF1Q01081 WAC-204ENST00000375646 2176 ntTSL 5 BASIC16.62■□□□□ 0.253e-7■■□□□ 14.3
U2AF1Q01081 WAC-208ENST00000424454 1330 ntTSL 26.61□□□□□ -1.353e-7■■□□□ 14.3
U2AF1Q01081 WAC-209ENST00000428935 1320 ntTSL 2 BASIC6.59□□□□□ -1.353e-7■■□□□ 14.3
U2AF1Q01081 SNX5-201ENST00000377759 2270 ntAPPRIS P1 TSL 1 (best) BASIC31.18■■■□□ 2.587e-33■■□□□ 14.3
U2AF1Q01081 SNX5-214ENST00000490175 2025 ntTSL 1 (best)21.01■□□□□ 0.957e-33■■□□□ 14.3
U2AF1Q01081 SNX5-202ENST00000377768 2288 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.817e-33■■□□□ 14.3
U2AF1Q01081 SNX5-211ENST00000483485 3087 ntTSL 29.75□□□□□ -0.857e-33■■□□□ 14.3
U2AF1Q01081 SNX5-218ENST00000606570 3931 nt8.23□□□□□ -1.097e-33■■□□□ 14.3
U2AF1Q01081 SNX5-215ENST00000491090 819 ntTSL 35.23□□□□□ -1.577e-33■■□□□ 14.3
U2AF1Q01081 SNX5-209ENST00000476648 950 ntTSL 34.65□□□□□ -1.677e-33■■□□□ 14.3
U2AF1Q01081 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.425e-9■■□□□ 14.3
U2AF1Q01081 HGD-205ENST00000476082 462 ntTSL 56.89□□□□□ -1.311e-8■■□□□ 14.3
U2AF1Q01081 UTRN-204ENST00000367545 12339 ntAPPRIS P1 TSL 5 BASIC5.02□□□□□ -1.611e-6■■□□□ 14.3
U2AF1Q01081 SEC31A-205ENST00000395310 4259 ntAPPRIS P4 TSL 1 (best) BASIC16.74■□□□□ 0.272e-7■■□□□ 14.3
U2AF1Q01081 SEC31A-202ENST00000311785 3909 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.172e-7■■□□□ 14.3
U2AF1Q01081 SEC31A-208ENST00000448323 4255 ntAPPRIS P4 TSL 5 BASIC15.6■□□□□ 0.092e-7■■□□□ 14.3
U2AF1Q01081 SEC31A-228ENST00000509142 3861 ntAPPRIS ALT2 TSL 5 BASIC14.23□□□□□ -0.132e-7■■□□□ 14.3
U2AF1Q01081 SEC31A-227ENST00000508502 3801 ntAPPRIS ALT1 TSL 1 (best) BASIC12.61□□□□□ -0.392e-7■■□□□ 14.3
U2AF1Q01081 SEC31A-241ENST00000515749 829 ntTSL 29.88□□□□□ -0.832e-7■■□□□ 14.3
U2AF1Q01081 SEC31A-207ENST00000443462 4042 ntTSL 2 BASIC9.53□□□□□ -0.882e-7■■□□□ 14.3
U2AF1Q01081 SEC31A-213ENST00000503937 1564 ntTSL 1 (best)9.25□□□□□ -0.932e-7■■□□□ 14.3
U2AF1Q01081 SEC31A-217ENST00000505984 3596 ntTSL 1 (best) BASIC7.18□□□□□ -1.262e-7■■□□□ 14.3
U2AF1Q01081 SEC31A-204ENST00000355196 4104 ntAPPRIS P4 TSL 2 BASIC6.99□□□□□ -1.292e-7■■□□□ 14.3
U2AF1Q01081 SEC31A-209ENST00000500777 3610 ntTSL 5 BASIC6.99□□□□□ -1.292e-7■■□□□ 14.3
U2AF1Q01081 SEC31A-201ENST00000264405 3447 ntTSL 2 BASIC6.09□□□□□ -1.432e-7■■□□□ 14.3
U2AF1Q01081 SEC31A-237ENST00000513858 3687 ntTSL 1 (best) BASIC6.07□□□□□ -1.442e-7■■□□□ 14.3
U2AF1Q01081 SEC31A-203ENST00000348405 4012 ntAPPRIS ALT2 TSL 1 (best) BASIC5.73□□□□□ -1.492e-7■■□□□ 14.3
U2AF1Q01081 SEC31A-232ENST00000511338 657 ntTSL 55.64□□□□□ -1.512e-7■■□□□ 14.3
U2AF1Q01081 SEC31A-215ENST00000505472 4159 ntTSL 5 BASIC4.41□□□□□ -1.72e-7■■□□□ 14.3
U2AF1Q01081 FGL1-206ENST00000518650 1093 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.212e-6■■□□□ 14.3
U2AF1Q01081 FGL1-201ENST00000381840 1335 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.122e-6■■□□□ 14.3
U2AF1Q01081 FGL1-205ENST00000427924 1247 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.512e-6■■□□□ 14.3
U2AF1Q01081 FGL1-202ENST00000381841 1374 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.572e-6■■□□□ 14.3
U2AF1Q01081 FGL1-203ENST00000398054 1462 ntAPPRIS P1 TSL 5 BASIC10.97□□□□□ -0.652e-6■■□□□ 14.3
U2AF1Q01081 FGL1-209ENST00000522444 1367 ntAPPRIS P1 TSL 1 (best) BASIC6.95□□□□□ -1.32e-6■■□□□ 14.3
U2AF1Q01081 SLC7A11-201ENST00000280612 9645 ntAPPRIS P1 TSL 1 (best) BASIC7.65□□□□□ -1.182e-7■■□□□ 14.3
U2AF1Q01081 C3-201ENST00000245907 5263 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.577e-12■■□□□ 14.2
U2AF1Q01081 NPHP3-ACAD11-201ENST00000471702 7784 ntTSL 2 BASIC16.63■□□□□ 0.252e-8■■□□□ 14.2
U2AF1Q01081 ACAD11-201ENST00000264990 4142 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.012e-8■■□□□ 14.2
U2AF1Q01081 ACAD11-205ENST00000485198 2940 ntTSL 1 (best)14.49□□□□□ -0.092e-8■■□□□ 14.2
U2AF1Q01081 ACAD11-202ENST00000469042 3276 ntTSL 214.08□□□□□ -0.162e-8■■□□□ 14.2
U2AF1Q01081 ACAD11-210ENST00000510100 695 ntTSL 39.1□□□□□ -0.952e-8■■□□□ 14.2
U2AF1Q01081 ACAD11-203ENST00000477604 740 ntTSL 37.5□□□□□ -1.212e-8■■□□□ 14.2
U2AF1Q01081 ACAD11-209ENST00000507705 568 ntTSL 47.31□□□□□ -1.242e-8■■□□□ 14.2
U2AF1Q01081 ACAD11-208ENST00000496418 3684 ntTSL 27.14□□□□□ -1.272e-8■■□□□ 14.2
U2AF1Q01081 UNC45A-207ENST00000487875 2641 ntTSL 219.02■□□□□ 0.648e-11■■□□□ 14.2
U2AF1Q01081 UNC45A-202ENST00000418476 3252 ntAPPRIS P3 TSL 1 (best) BASIC14.7□□□□□ -0.068e-11■■□□□ 14.2
U2AF1Q01081 UNC45A-201ENST00000394275 4002 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.178e-11■■□□□ 14.2
U2AF1Q01081 UNC45A-216ENST00000639885 3255 ntTSL 5 BASIC13.63□□□□□ -0.238e-11■■□□□ 14.2
U2AF1Q01081 MYSM1-201ENST00000401044 3176 ntTSL 1 (best)4.67□□□□□ -1.664e-9■■□□□ 14.2
U2AF1Q01081 MYSM1-207ENST00000493821 7793 ntTSL 1 (best)2.65□□□□□ -1.984e-9■■□□□ 14.2
U2AF1Q01081 HNRNPC-205ENST00000553300 1375 ntAPPRIS P2 TSL 1 (best) BASIC17.58■□□□□ 0.46e-11■■□□□ 14.2
U2AF1Q01081 HNRNPC-221ENST00000555883 1182 ntTSL 1 (best) BASIC16.97■□□□□ 0.316e-11■■□□□ 14.2
U2AF1Q01081 HNRNPC-202ENST00000420743 1559 ntTSL 2 BASIC16.02■□□□□ 0.166e-11■■□□□ 14.2
U2AF1Q01081 HNRNPC-231ENST00000557336 580 ntTSL 314.96□□□□□ -0.016e-11■■□□□ 14.2
U2AF1Q01081 HNRNPC-214ENST00000554969 1924 ntAPPRIS P2 TSL 5 BASIC14.54□□□□□ -0.086e-11■■□□□ 14.2
U2AF1Q01081 HNRNPC-230ENST00000557201 1371 ntTSL 1 (best) BASIC14.31□□□□□ -0.126e-11■■□□□ 14.2
Retrieved 100 of 10,096 protein–RNA pairs in 60.1 ms