RNA–Protein interactions for RNA: ENST00000557336.1

HNRNPC-231, Transcript of heterogeneous nuclear ribonucleoprotein C (C1/C2), humanhuman

TSL 3

Gene HNRNPC, Length 580 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HNRNPC-231ENST00000557336 AEBP2Q6ZN18 517 aaPredicted RBP28.83■■■□□ 2.21
HNRNPC-231ENST00000557336 NISCHQ9Y2I1 1504 aa28.18■■■□□ 2.1
HNRNPC-231ENST00000557336 CHIC1Q5VXU3 224 aa27.82■■■□□ 2.04
HNRNPC-231ENST00000557336 ABCC9O60706 1549 aa25.27■■□□□ 1.64
HNRNPC-231ENST00000557336 CCDC180Q9P1Z9 1646 aa25.18■■□□□ 1.62
HNRNPC-231ENST00000557336 PHF23Q9BUL5 403 aaPredicted RBP24.61■■□□□ 1.53
HNRNPC-231ENST00000557336 SENP3Q9H4L4 574 aaPredicted RBP24.23■■□□□ 1.47
HNRNPC-231ENST00000557336 RB1CC1Q8TDY2 1594 aa23.99■■□□□ 1.43
HNRNPC-231ENST00000557336 DNAJC5BQ9UF47 199 aa23.86■■□□□ 1.41
HNRNPC-231ENST00000557336 NACADO15069 1562 aa23.85■■□□□ 1.41
HNRNPC-231ENST00000557336 DCAF8L2P0C7V8 631 aa23.73■■□□□ 1.39
HNRNPC-231ENST00000557336 PABPN1Q86U42 306 aaKnown RBP eCLIP23.58■■□□□ 1.37
HNRNPC-231ENST00000557336 MYO15BQ96JP2 1530 aa23.56■■□□□ 1.36
HNRNPC-231ENST00000557336 UNC13AQ9UPW8 1703 aa23.45■■□□□ 1.34
HNRNPC-231ENST00000557336 BICRAQ9NZM4 1560 aa23.4■■□□□ 1.34
HNRNPC-231ENST00000557336 ZCCHC6Q5VYS8 1495 aaKnown RBP23.35■■□□□ 1.33
HNRNPC-231ENST00000557336 DCAF1Q9Y4B6 1507 aa23.26■■□□□ 1.31
HNRNPC-231ENST00000557336 SCRIBQ14160 1630 aa22.98■■□□□ 1.27
HNRNPC-231ENST00000557336 SHROOM4Q9ULL8 1493 aa22.98■■□□□ 1.27
HNRNPC-231ENST00000557336 CC2D2AQ9P2K1 1620 aa22.8■■□□□ 1.24
HNRNPC-231ENST00000557336 EIF4G1Q04637 1599 aaKnown RBP22.76■■□□□ 1.23
HNRNPC-231ENST00000557336 CECR2Q9BXF3 1484 aa22.75■■□□□ 1.23
HNRNPC-231ENST00000557336 FOXD1Q16676 465 aa22.67■■□□□ 1.22
HNRNPC-231ENST00000557336 PLPPR3Q6T4P5 718 aa22.43■■□□□ 1.18
HNRNPC-231ENST00000557336 NCAPD3P42695 1498 aa22.09■■□□□ 1.13
HNRNPC-231ENST00000557336 ATAD2BQ9ULI0 1458 aa22.02■■□□□ 1.12
HNRNPC-231ENST00000557336 SMARCA4P51532 1647 aa21.94■■□□□ 1.1
HNRNPC-231ENST00000557336 SMARCA2P51531 1590 aa21.87■■□□□ 1.09
HNRNPC-231ENST00000557336 HMGXB3Q12766 1538 aa21.85■■□□□ 1.09
HNRNPC-231ENST00000557336 DNAJC5Q9H3Z4 198 aa21.82■■□□□ 1.08
HNRNPC-231ENST00000557336 BAZ1AQ9NRL2 1556 aaPredicted RBP21.81■■□□□ 1.08
HNRNPC-231ENST00000557336 PPP6R1Q9UPN7 881 aa21.8■■□□□ 1.08
HNRNPC-231ENST00000557336 PEG3Q9GZU2 1588 aa21.76■■□□□ 1.07
HNRNPC-231ENST00000557336 NESP48681 1621 aa21.75■■□□□ 1.07
HNRNPC-231ENST00000557336 ERCC6Q03468 1493 aa21.74■■□□□ 1.07
HNRNPC-231ENST00000557336 MROH2BQ7Z745 1585 aa21.74■■□□□ 1.07
HNRNPC-231ENST00000557336 CUX2O14529 1486 aa21.73■■□□□ 1.07
HNRNPC-231ENST00000557336 BAZ1BQ9UIG0 1483 aaKnown RBP21.73■■□□□ 1.07
HNRNPC-231ENST00000557336 ADRA2BP18089 450 aa21.72■■□□□ 1.07
HNRNPC-231ENST00000557336 LAMC3Q9Y6N6 1575 aa21.5■■□□□ 1.03
HNRNPC-231ENST00000557336 THOC2Q8NI27 1593 aaKnown RBP21.47■■□□□ 1.03
HNRNPC-231ENST00000557336 WIZO95785 1651 aa21.43■■□□□ 1.02
HNRNPC-231ENST00000557336 CADPSQ9ULU8 1353 aa21.4■■□□□ 1.02
HNRNPC-231ENST00000557336 PDS5BQ9NTI5 1447 aa21.39■■□□□ 1.02
HNRNPC-231ENST00000557336 KIF21AQ7Z4S6 1674 aa21.37■■□□□ 1.01
HNRNPC-231ENST00000557336 RSF1Q96T23 1441 aaPredicted RBP21.3■■□□□ 1
HNRNPC-231ENST00000557336 PIAS4Q8N2W9 510 aaPredicted RBP21.27■■□□□ 1
HNRNPC-231ENST00000557336 MRC2Q9UBG0 1479 aa21.22■□□□□ 0.99
HNRNPC-231ENST00000557336 WDR62O43379 1518 aa21.18■□□□□ 0.98
HNRNPC-231ENST00000557336 CFTRP13569 1480 aa21.16■□□□□ 0.98
HNRNPC-231ENST00000557336 TOP2AP11388 1531 aaKnown RBP21.14■□□□□ 0.98
HNRNPC-231ENST00000557336 FANCD2Q9BXW9 1451 aa21.13■□□□□ 0.97
HNRNPC-231ENST00000557336 CEP164Q9UPV0 1460 aa21.12■□□□□ 0.97
HNRNPC-231ENST00000557336 URB2Q14146 1524 aaKnown RBP21■□□□□ 0.95
HNRNPC-231ENST00000557336 CCDC88BA6NC98 1476 aa20.96■□□□□ 0.95
HNRNPC-231ENST00000557336 PRDM2Q13029 1718 aa20.8■□□□□ 0.92
HNRNPC-231ENST00000557336 TRIM41Q8WV44 630 aa20.79■□□□□ 0.92
HNRNPC-231ENST00000557336 MSH5O43196 834 aa20.77■□□□□ 0.92
HNRNPC-231ENST00000557336 OSCARQ8IYS5 282 aa20.77■□□□□ 0.92
HNRNPC-231ENST00000557336 ZNF608Q9ULD9 1512 aaPredicted RBP20.75■□□□□ 0.91
HNRNPC-231ENST00000557336 TOPBP1Q92547 1522 aa20.73■□□□□ 0.91
HNRNPC-231ENST00000557336 IFT140Q96RY7 1462 aa20.71■□□□□ 0.91
HNRNPC-231ENST00000557336 ABCC8Q09428 1581 aa20.63■□□□□ 0.89
HNRNPC-231ENST00000557336 DNMBPQ6XZF7 1577 aa20.63■□□□□ 0.89
HNRNPC-231ENST00000557336 TARBP1Q13395 1621 aaKnown RBP20.56■□□□□ 0.88
HNRNPC-231ENST00000557336 EIF4G3O43432 1585 aaKnown RBP20.55■□□□□ 0.88
HNRNPC-231ENST00000557336 AQRO60306 1485 aaKnown RBP eCLIP20.55■□□□□ 0.886e-12■■■■■ 27.1
HNRNPC-231ENST00000557336 POLA1P09884 1462 aaPredicted RBP20.54■□□□□ 0.88
HNRNPC-231ENST00000557336 RAD54L2Q9Y4B4 1467 aa20.49■□□□□ 0.87
HNRNPC-231ENST00000557336 RIMBP3CA6NJZ7 1639 aa20.49■□□□□ 0.87
HNRNPC-231ENST00000557336 RIMBP3BA6NNM3 1639 aa20.49■□□□□ 0.87
HNRNPC-231ENST00000557336 RIMBP3Q9UFD9 1639 aa20.49■□□□□ 0.87
HNRNPC-231ENST00000557336 ARHGEF11O15085 1522 aa20.44■□□□□ 0.86
HNRNPC-231ENST00000557336 SOGA1O94964 1423 aa20.44■□□□□ 0.86
HNRNPC-231ENST00000557336 TDRD9Q8NDG6 1382 aaKnown RBP20.43■□□□□ 0.86
HNRNPC-231ENST00000557336 CUX1P39880 1505 aa20.41■□□□□ 0.86
HNRNPC-231ENST00000557336 FGD5Q6ZNL6 1462 aa20.39■□□□□ 0.85
HNRNPC-231ENST00000557336 CHD1O14646 1710 aa20.37■□□□□ 0.85
HNRNPC-231ENST00000557336 FBLN2P98095 1184 aa20.34■□□□□ 0.85
HNRNPC-231ENST00000557336 CYB5RLQ6IPT4 315 aa20.31■□□□□ 0.84
HNRNPC-231ENST00000557336 SUPT5HO00267 1087 aaKnown RBP20.3■□□□□ 0.84
HNRNPC-231ENST00000557336 SNAPC4Q5SXM2 1469 aa20.3■□□□□ 0.84
HNRNPC-231ENST00000557336 ARAP1Q96P48 1450 aa20.27■□□□□ 0.84
HNRNPC-231ENST00000557336 WDR97A6NE52 1622 aa20.27■□□□□ 0.83
HNRNPC-231ENST00000557336 GRIN2BQ13224 1484 aa20.24■□□□□ 0.83
HNRNPC-231ENST00000557336 MAGI1Q96QZ7 1491 aaPredicted RBP20.22■□□□□ 0.83
HNRNPC-231ENST00000557336 CLASP1Q7Z460 1538 aa20.22■□□□□ 0.83
HNRNPC-231ENST00000557336 CHMP7Q8WUX9 453 aaPredicted RBP20.2■□□□□ 0.82
HNRNPC-231ENST00000557336 SYNJ2O15056 1496 aa20.17■□□□□ 0.82
HNRNPC-231ENST00000557336 GAPVD1Q14C86 1478 aa20.17■□□□□ 0.82
HNRNPC-231ENST00000557336 ABCA10Q8WWZ4 1543 aa20.17■□□□□ 0.82
HNRNPC-231ENST00000557336 ABCA5Q8WWZ7 1642 aa20.12■□□□□ 0.81
HNRNPC-231ENST00000557336 SYNJ1O43426 1573 aa20.12■□□□□ 0.81
HNRNPC-231ENST00000557336 PBRM1Q86U86 1689 aa20.09■□□□□ 0.81
HNRNPC-231ENST00000557336 WRNQ14191 1432 aaPredicted RBP eCLIP20.07■□□□□ 0.8
HNRNPC-231ENST00000557336 TOP2BQ02880 1626 aa20.03■□□□□ 0.8
HNRNPC-231ENST00000557336 TRHP20396 242 aaPredicted RBP20.02■□□□□ 0.8
HNRNPC-231ENST00000557336 BIVM-ERCC5R4GMW8 1640 aa20.02■□□□□ 0.79
HNRNPC-231ENST00000557336 GRIN2AQ12879 1464 aa19.99■□□□□ 0.79
HNRNPC-231ENST00000557336 ADAMTS12P58397 1594 aa19.95■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 44.7 ms