Protein–RNA interactions for Protein: O75940

SMNDC1, Survival of motor neuron-related-splicing factor 30, humanhuman

Known RBP eCLIP

Length 238 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMNDC1O75940 RPS18-233ENST00000474973 589 ntTSL 2 BASIC10.54□□□□□ -0.727e-12■■■□□ 17
SMNDC1O75940 RPS18-235ENST00000479802 413 ntTSL 210.54□□□□□ -0.727e-12■■■□□ 17
SMNDC1O75940 RPS18-230ENST00000439602 613 ntAPPRIS P1 TSL 1 (best) BASIC10.54□□□□□ -0.727e-12■■■□□ 17
SMNDC1O75940 RPS18-234ENST00000476222 685 ntTSL 1 (best)10.54□□□□□ -0.727e-12■■■□□ 17
SMNDC1O75940 AC007389.1-201ENST00000606978 1117 ntTSL 5 BASIC10.05□□□□□ -0.82e-8■■■□□ 17
SMNDC1O75940 RPS18-231ENST00000472218 1109 ntTSL 29.7□□□□□ -0.867e-12■■■□□ 17
SMNDC1O75940 RPS18-232ENST00000474626 639 ntTSL 38.83□□□□□ -17e-12■■■□□ 17
SMNDC1O75940 RPS18-237ENST00000496813 642 ntTSL 28.83□□□□□ -17e-12■■■□□ 17
SMNDC1O75940 COQ8A-208ENST00000485677 449 ntTSL 26.55□□□□□ -1.362e-8■■■□□ 17
SMNDC1O75940 RNU6ATAC28P-201ENST00000459249 118 ntBASIC5.12□□□□□ -1.592e-8■■■□□ 17
SMNDC1O75940 SLC6A8-207ENST00000466243 544 ntTSL 212.29□□□□□ -0.448e-12■■■□□ 17
SMNDC1O75940 OAZ1-209ENST00000592787 857 ntTSL 214.62□□□□□ -0.073e-8■■■□□ 17
SMNDC1O75940 TRO-202ENST00000319167 2326 ntAPPRIS ALT2 TSL 2 BASIC13.45□□□□□ -0.262e-21■■■□□ 17
SMNDC1O75940 TRO-203ENST00000375022 2306 ntAPPRIS ALT2 TSL 1 (best) BASIC13.45□□□□□ -0.262e-21■■■□□ 17
SMNDC1O75940 TRO-215ENST00000445561 2597 ntTSL 1 (best)12.99□□□□□ -0.332e-21■■■□□ 17
SMNDC1O75940 TRO-224ENST00000492706 3677 ntTSL 212.96□□□□□ -0.332e-21■■■□□ 17
SMNDC1O75940 TRO-205ENST00000399736 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.392e-21■■■□□ 17
SMNDC1O75940 TRO-225ENST00000622017 1403 ntAPPRIS ALT2 TSL 5 BASIC12.52□□□□□ -0.412e-21■■■□□ 17
SMNDC1O75940 TRO-201ENST00000173898 4647 ntAPPRIS P4 TSL 1 (best) BASIC12.28□□□□□ -0.442e-21■■■□□ 17
SMNDC1O75940 TRO-221ENST00000475183 632 ntTSL 310.57□□□□□ -0.722e-21■■■□□ 17
SMNDC1O75940 TRO-204ENST00000375041 3488 ntAPPRIS ALT2 TSL 1 (best) BASIC10.31□□□□□ -0.762e-21■■■□□ 17
SMNDC1O75940 TRO-208ENST00000420798 3613 ntTSL 2 BASIC10.12□□□□□ -0.792e-21■■■□□ 17
SMNDC1O75940 TRO-219ENST00000469211 842 ntTSL 28.5□□□□□ -1.052e-21■■■□□ 17
SMNDC1O75940 SNORA11.4-201ENST00000408823 129 ntBASIC2.87□□□□□ -1.952e-21■■■□□ 17
SMNDC1O75940 MICALL2-209ENST00000479007 1855 ntTSL 218.75■□□□□ 0.592e-6■■■□□ 17
SMNDC1O75940 MICALL2-215ENST00000496184 2722 ntTSL 217.95■□□□□ 0.462e-6■■■□□ 17
SMNDC1O75940 UBE2I-210ENST00000562482 735 ntTSL 214.41□□□□□ -0.12e-6■■■□□ 17
SMNDC1O75940 DDX42-201ENST00000359353 2783 ntTSL 5 BASIC25.39■■□□□ 1.668e-9■■■□□ 17
SMNDC1O75940 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC19.13■□□□□ 0.652e-12■■■□□ 17
SMNDC1O75940 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC19.02■□□□□ 0.638e-9■■■□□ 17
SMNDC1O75940 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.578e-9■■■□□ 17
SMNDC1O75940 FBXO18-203ENST00000397269 3640 ntTSL 5 BASIC18.31■□□□□ 0.528e-9■■■□□ 17
SMNDC1O75940 FBXO18-201ENST00000362091 3560 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.528e-9■■■□□ 17
SMNDC1O75940 SPRY4-205ENST00000511815 553 ntTSL 418.18■□□□□ 0.58e-9■■■□□ 17
SMNDC1O75940 AP3D1-209ENST00000591284 580 ntTSL 517.28■□□□□ 0.365e-8■■■□□ 17
SMNDC1O75940 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.258e-9■■■□□ 17
SMNDC1O75940 NMU-205ENST00000511469 756 ntTSL 3 BASIC16.51■□□□□ 0.238e-9■■■□□ 17
SMNDC1O75940 SPRY4-203ENST00000503582 575 ntTSL 416.04■□□□□ 0.168e-9■■■□□ 17
SMNDC1O75940 SPRY4-202ENST00000434127 2379 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.128e-9■■■□□ 17
SMNDC1O75940 NMU-202ENST00000505262 693 ntTSL 3 BASIC15.33■□□□□ 0.048e-9■■■□□ 17
SMNDC1O75940 NMU-203ENST00000507338 658 ntTSL 3 BASIC15.03■□□□□ -08e-9■■■□□ 17
SMNDC1O75940 NMU-201ENST00000264218 816 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.148e-9■■■□□ 17
SMNDC1O75940 PSAP-202ENST00000394936 2872 ntAPPRIS P2 TSL 1 (best) BASIC14.04□□□□□ -0.162e-12■■■□□ 17
SMNDC1O75940 PSAP-201ENST00000394934 2830 ntAPPRIS ALT1 TSL 5 BASIC13.68□□□□□ -0.222e-12■■■□□ 17
SMNDC1O75940 SPRY4-201ENST00000344120 4938 ntTSL 1 (best) BASIC12.21□□□□□ -0.458e-9■■■□□ 17
SMNDC1O75940 FBXO18-202ENST00000379999 3702 ntTSL 1 (best) BASIC10.2□□□□□ -0.788e-9■■■□□ 17
SMNDC1O75940 NIPBL-202ENST00000448238 8729 ntTSL 1 (best) BASIC9.44□□□□□ -0.98e-9■■■□□ 17
SMNDC1O75940 NIPBL-201ENST00000282516 10435 ntAPPRIS P1 TSL 1 (best) BASIC9□□□□□ -0.978e-9■■■□□ 17
SMNDC1O75940 FBXO18-205ENST00000461504 835 ntTSL 58.91□□□□□ -0.988e-9■■■□□ 17
SMNDC1O75940 DDX42-203ENST00000457800 3323 ntTSL 5 BASIC7.63□□□□□ -1.198e-9■■■□□ 17
SMNDC1O75940 DDX42-204ENST00000577940 1427 ntTSL 57.51□□□□□ -1.218e-9■■■□□ 17
SMNDC1O75940 DDX42-217ENST00000584010 3929 ntTSL 27.49□□□□□ -1.218e-9■■■□□ 17
SMNDC1O75940 NMU-206ENST00000515325 616 ntTSL 37.3□□□□□ -1.248e-9■■■□□ 17
SMNDC1O75940 FBXO18-216ENST00000496013 336 ntTSL 26.08□□□□□ -1.448e-9■■■□□ 17
SMNDC1O75940 FBXO18-213ENST00000485290 534 ntTSL 26.01□□□□□ -1.458e-9■■■□□ 17
SMNDC1O75940 NMU-204ENST00000509371 283 ntTSL 1 (best)5.24□□□□□ -1.578e-9■■■□□ 17
SMNDC1O75940 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC16■□□□□ 0.151e-7■■■□□ 17
SMNDC1O75940 PPAN-203ENST00000430370 594 ntTSL 310.94□□□□□ -0.661e-27■■■□□ 17
SMNDC1O75940 SNORD105-201ENST00000386910 85 ntBASIC1.47□□□□□ -2.171e-27■■■□□ 17
SMNDC1O75940 TAF1D-219ENST00000534079 656 ntTSL 29.14□□□□□ -0.958e-13■■■□□ 16.9
SMNDC1O75940 KDM5D-209ENST00000492117 5235 ntTSL 211.94□□□□□ -0.56e-6■■■□□ 16.9
SMNDC1O75940 KDM5D-202ENST00000382806 5134 ntAPPRIS ALT2 TSL 1 (best) BASIC11.7□□□□□ -0.546e-6■■■□□ 16.9
SMNDC1O75940 KDM5D-201ENST00000317961 5472 ntAPPRIS ALT2 TSL 1 (best) BASIC11.14□□□□□ -0.636e-6■■■□□ 16.9
SMNDC1O75940 KDM5D-210ENST00000541639 5579 ntAPPRIS P5 TSL 1 (best) BASIC11.1□□□□□ -0.636e-6■■■□□ 16.9
SMNDC1O75940 KDM5D-206ENST00000469599 5501 ntTSL 210.96□□□□□ -0.656e-6■■■□□ 16.9
SMNDC1O75940 KDM5D-204ENST00000440077 4701 ntAPPRIS ALT2 TSL 59.44□□□□□ -0.96e-6■■■□□ 16.9
SMNDC1O75940 TCF3-220ENST00000611869 4409 ntAPPRIS P3 TSL 1 (best) BASIC13.18□□□□□ -0.32e-6■■■□□ 16.9
SMNDC1O75940 MICALL2-205ENST00000467783 639 ntTSL 315.82■□□□□ 0.122e-6■■■□□ 16.9
SMNDC1O75940 SNORA52-201ENST00000362915 134 ntBASIC11.29□□□□□ -0.61e-323■■■□□ 16.9
SMNDC1O75940 BCAR1-210ENST00000561970 594 ntTSL 426.35■■□□□ 1.812e-6■■■□□ 16.9
SMNDC1O75940 RSRP1-222ENST00000570063 1821 ntTSL 517.35■□□□□ 0.378e-29■■■□□ 16.9
SMNDC1O75940 RSRP1-204ENST00000473314 3034 ntTSL 215.19■□□□□ 0.028e-29■■■□□ 16.9
SMNDC1O75940 RSRP1-201ENST00000243189 1502 ntAPPRIS P2 TSL 1 (best) BASIC14.97□□□□□ -0.018e-29■■■□□ 16.9
SMNDC1O75940 RSRP1-217ENST00000568254 2013 ntTSL 1 (best)14.6□□□□□ -0.078e-29■■■□□ 16.9
SMNDC1O75940 RSRP1-207ENST00000498238 2941 ntTSL 213.45□□□□□ -0.268e-29■■■□□ 16.9
SMNDC1O75940 RSRP1-212ENST00000565733 772 ntTSL 312.79□□□□□ -0.368e-29■■■□□ 16.9
SMNDC1O75940 RSRP1-205ENST00000475766 525 ntTSL 410.04□□□□□ -0.88e-29■■■□□ 16.9
SMNDC1O75940 RSRP1-213ENST00000566395 824 ntTSL 39.85□□□□□ -0.838e-29■■■□□ 16.9
SMNDC1O75940 RSRP1-210ENST00000564223 395 ntTSL 38.9□□□□□ -0.988e-29■■■□□ 16.9
SMNDC1O75940 RSRP1-221ENST00000569495 901 ntTSL 27.7□□□□□ -1.188e-29■■■□□ 16.9
SMNDC1O75940 TRIM28-215ENST00000601150 915 ntTSL 315.07■□□□□ 01e-7■■■□□ 16.9
SMNDC1O75940 TRIM28-207ENST00000597136 1552 ntTSL 213.3□□□□□ -0.281e-7■■■□□ 16.9
SMNDC1O75940 TRIM28-212ENST00000597995 702 ntTSL 211.3□□□□□ -0.61e-7■■■□□ 16.9
SMNDC1O75940 GUK1-218ENST00000469973 795 ntTSL 223.16■■□□□ 1.31e-7■■■□□ 16.9
SMNDC1O75940 GSK3A-203ENST00000453535 1897 ntTSL 527.13■■□□□ 1.934e-6■■■□□ 16.9
SMNDC1O75940 GSK3A-201ENST00000222330 2188 ntAPPRIS P2 TSL 1 (best) BASIC23.08■■□□□ 1.294e-6■■■□□ 16.9
SMNDC1O75940 GSK3A-202ENST00000398249 3524 ntAPPRIS ALT2 TSL 1 (best) BASIC9.96□□□□□ -0.814e-6■■■□□ 16.9
SMNDC1O75940 NCL-210ENST00000494618 910 ntTSL 29.69□□□□□ -0.866e-22■■■□□ 16.9
SMNDC1O75940 LAMA5-201ENST00000252999 11426 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.496e-7■■■□□ 16.9
SMNDC1O75940 RANBP1-204ENST00000416427 645 ntTSL 522.64■■□□□ 1.213e-15■■■□□ 16.9
SMNDC1O75940 RANBP1-206ENST00000421656 333 ntTSL 314.55□□□□□ -0.083e-15■■■□□ 16.9
SMNDC1O75940 RANBP1-209ENST00000432879 744 ntTSL 312.76□□□□□ -0.373e-15■■■□□ 16.9
SMNDC1O75940 RANBP1-212ENST00000467920 529 ntTSL 27.75□□□□□ -1.173e-15■■■□□ 16.9
SMNDC1O75940 BCAR1-206ENST00000535626 2894 ntTSL 2 BASIC17.51■□□□□ 0.398e-7■■■□□ 16.9
SMNDC1O75940 BCAR1-207ENST00000538440 3192 ntAPPRIS ALT2 TSL 2 BASIC16.45■□□□□ 0.228e-7■■■□□ 16.9
SMNDC1O75940 BCAR1-204ENST00000418647 3387 ntAPPRIS ALT2 TSL 2 BASIC16.26■□□□□ 0.198e-7■■■□□ 16.9
SMNDC1O75940 BCAR1-205ENST00000420641 2725 ntAPPRIS ALT2 TSL 2 BASIC15.21■□□□□ 0.028e-7■■■□□ 16.9
SMNDC1O75940 BCAR1-211ENST00000562556 4659 ntTSL 213.61□□□□□ -0.238e-7■■■□□ 16.9
SMNDC1O75940 BCAR1-203ENST00000393422 4064 ntAPPRIS ALT2 TSL 2 BASIC12.7□□□□□ -0.388e-7■■■□□ 16.9
SMNDC1O75940 AC006486.1-201ENST00000594664 634 ntAPPRIS P1 TSL 3 BASIC24.62■■□□□ 1.532e-6■■■□□ 16.8
Retrieved 100 of 11,362 protein–RNA pairs in 278 ms