RNA–Protein interactions for RNA: ENST00000448238.2

NIPBL-202, Transcript of NIPBL, cohesin loading factor, humanhuman

TSL 1 (best) BASIC

Gene NIPBL, Length 8,729 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIPBL-202ENST00000448238 PELP1Q8IZL8 1130 aaKnown RBP15.21■□□□□ 0.03
NIPBL-202ENST00000448238 MYT1Q01538 1121 aa14.55□□□□□ -0.08
NIPBL-202ENST00000448238 CCER1Q8TC90 406 aaPredicted RBP14.46□□□□□ -0.1
NIPBL-202ENST00000448238 ERICH6Q7L0X2 663 aa14.4□□□□□ -0.1
NIPBL-202ENST00000448238 YTHDC1Q96MU7 727 aaKnown RBP14.16□□□□□ -0.14
NIPBL-202ENST00000448238 DCAF8L2P0C7V8 631 aa13.88□□□□□ -0.19
NIPBL-202ENST00000448238 CENPBP07199 599 aaPredicted RBP13.86□□□□□ -0.19
NIPBL-202ENST00000448238 TTBK1Q5TCY1 1321 aaPredicted RBP13.84□□□□□ -0.19
NIPBL-202ENST00000448238 NEFLP07196 543 aa13.69□□□□□ -0.22
NIPBL-202ENST00000448238 FAM9AQ8IZU1 332 aaPredicted RBP13.68□□□□□ -0.22
NIPBL-202ENST00000448238 DAXXQ9UER7 740 aaPredicted RBP13.67□□□□□ -0.22
NIPBL-202ENST00000448238 APLP2Q06481 763 aa13.67□□□□□ -0.22
NIPBL-202ENST00000448238 ZEB1P37275 1124 aaPredicted RBP13.39□□□□□ -0.27
NIPBL-202ENST00000448238 RTL5Q5HYW3 569 aaPredicted RBP13.3□□□□□ -0.28
NIPBL-202ENST00000448238 SUPT5HO00267 1087 aaKnown RBP13.21□□□□□ -0.29
NIPBL-202ENST00000448238 ZNF316A6NFI3 1004 aaPredicted RBP13.2□□□□□ -0.3
NIPBL-202ENST00000448238 GLIPR1L2Q4G1C9 344 aa13.11□□□□□ -0.31
NIPBL-202ENST00000448238 PCGF6Q9BYE7 350 aa13.07□□□□□ -0.32
NIPBL-202ENST00000448238 EHMT2Q96KQ7 1210 aa13.04□□□□□ -0.32
NIPBL-202ENST00000448238 CLSPNQ9HAW4 1339 aa13.02□□□□□ -0.33
NIPBL-202ENST00000448238 ANP32BQ92688 251 aaKnown RBP12.81□□□□□ -0.36
NIPBL-202ENST00000448238 ZBTB47Q9UFB7 747 aaPredicted RBP12.77□□□□□ -0.37
NIPBL-202ENST00000448238 EIF5BO60841 1220 aaKnown RBP12.71□□□□□ -0.37
NIPBL-202ENST00000448238 ATP1B4Q9UN42 357 aaPredicted RBP12.71□□□□□ -0.37
NIPBL-202ENST00000448238 MYT1LQ9UL68 1186 aa12.6□□□□□ -0.39
NIPBL-202ENST00000448238 TNNT2P45379 298 aaPredicted RBP12.59□□□□□ -0.39
NIPBL-202ENST00000448238 CDK11AQ9UQ88 783 aaPredicted RBP12.57□□□□□ -0.4
NIPBL-202ENST00000448238 POLR3GLQ9BT43 218 aa12.57□□□□□ -0.4
NIPBL-202ENST00000448238 NEFMP07197 916 aa12.55□□□□□ -0.4
NIPBL-202ENST00000448238 CDK11BP21127 795 aaKnown RBP12.54□□□□□ -0.4
NIPBL-202ENST00000448238 SLC4A1APQ9BWU0 796 aaKnown RBP12.51□□□□□ -0.41
NIPBL-202ENST00000448238 ANP32AP39687 249 aaKnown RBP12.5□□□□□ -0.41
NIPBL-202ENST00000448238 RANGAP1P46060 587 aaPredicted RBP12.47□□□□□ -0.41
NIPBL-202ENST00000448238 UBTFP17480 764 aaKnown RBP12.46□□□□□ -0.42
NIPBL-202ENST00000448238 SHROOM4Q9ULL8 1493 aa12.45□□□□□ -0.42
NIPBL-202ENST00000448238 HSP90AA1P07900 732 aaKnown RBP12.42□□□□□ -0.42
NIPBL-202ENST00000448238 TRIM44Q96DX7 344 aaPredicted RBP12.38□□□□□ -0.43
NIPBL-202ENST00000448238 UPF2Q9HAU5 1272 aaKnown RBP12.35□□□□□ -0.43
NIPBL-202ENST00000448238 TRIM41Q8WV44 630 aa12.34□□□□□ -0.43
NIPBL-202ENST00000448238 CANXP27824 592 aaKnown RBP12.34□□□□□ -0.43
NIPBL-202ENST00000448238 HRCP23327 699 aa12.33□□□□□ -0.44
NIPBL-202ENST00000448238 TRIM26Q12899 539 aaPredicted RBP12.31□□□□□ -0.44
NIPBL-202ENST00000448238 CNGB1Q14028 1251 aaPredicted RBP12.28□□□□□ -0.44
NIPBL-202ENST00000448238 NCLP19338 710 aaKnown RBP12.27□□□□□ -0.44
NIPBL-202ENST00000448238 SLC24A1O60721 1099 aa12.23□□□□□ -0.45
NIPBL-202ENST00000448238 ANP32EQ9BTT0 268 aa12.23□□□□□ -0.45
NIPBL-202ENST00000448238 DIEXFQ68CQ4 756 aaKnown RBP12.22□□□□□ -0.45
NIPBL-202ENST00000448238 ANP32CO43423 234 aa12.16□□□□□ -0.46
NIPBL-202ENST00000448238 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.16□□□□□ -0.46
NIPBL-202ENST00000448238 HNRNPUL2Q1KMD3 747 aaKnown RBP12.16□□□□□ -0.46
NIPBL-202ENST00000448238 BCL11AQ9H165 835 aa12.13□□□□□ -0.47
NIPBL-202ENST00000448238 CHIC1Q5VXU3 224 aa12.12□□□□□ -0.47
NIPBL-202ENST00000448238 ITGAEP38570 1179 aa12.11□□□□□ -0.47
NIPBL-202ENST00000448238 NPM2Q86SE8 214 aaKnown RBP12.09□□□□□ -0.47
NIPBL-202ENST00000448238 BCANQ96GW7 911 aa12.09□□□□□ -0.47
NIPBL-202ENST00000448238 GTF3C3Q9Y5Q9 886 aa12.07□□□□□ -0.48
NIPBL-202ENST00000448238 ZRSR1Q15695 479 aaKnown RBP12.06□□□□□ -0.48
NIPBL-202ENST00000448238 ERICH6BQ5W0A0 696 aa12.05□□□□□ -0.48
NIPBL-202ENST00000448238 GOLGA6L22H0YM25 854 aa12.03□□□□□ -0.48
NIPBL-202ENST00000448238 DNTTIP2Q5QJE6 756 aaKnown RBP12.03□□□□□ -0.48
NIPBL-202ENST00000448238 CALRP27797 417 aaKnown RBP12.01□□□□□ -0.49
NIPBL-202ENST00000448238 L1TD1Q5T7N2 865 aaKnown RBP12.01□□□□□ -0.49
NIPBL-202ENST00000448238 NRDCO43847 1150 aa12□□□□□ -0.49
NIPBL-202ENST00000448238 ZNF326Q5BKZ1 582 aaKnown RBP12□□□□□ -0.49
NIPBL-202ENST00000448238 GOLGA6L2Q8N9W4 650 aaPredicted RBP11.98□□□□□ -0.49
NIPBL-202ENST00000448238 GOLGA6L6A8MZA4 724 aa11.98□□□□□ -0.49
NIPBL-202ENST00000448238 PTMAP06454 111 aaKnown RBP11.97□□□□□ -0.49
NIPBL-202ENST00000448238 BECN1Q14457 450 aa11.96□□□□□ -0.5
NIPBL-202ENST00000448238 CHAF1AQ13111 956 aaPredicted RBP11.94□□□□□ -0.5
NIPBL-202ENST00000448238 ARXQ96QS3 562 aa11.93□□□□□ -0.5
NIPBL-202ENST00000448238 NBR1Q14596 966 aa11.93□□□□□ -0.5
NIPBL-202ENST00000448238 DDRGK1Q96HY6 314 aa11.9□□□□□ -0.5
NIPBL-202ENST00000448238 PPARGC1BQ86YN6 1023 aaKnown RBP11.9□□□□□ -0.5
NIPBL-202ENST00000448238 TNNT3P45378 269 aaPredicted RBP11.89□□□□□ -0.51
NIPBL-202ENST00000448238 MYH16Q9H6N6 1097 aa11.88□□□□□ -0.51
NIPBL-202ENST00000448238 NAP1L5Q96NT1 182 aaPredicted RBP11.87□□□□□ -0.51
NIPBL-202ENST00000448238 USP35Q9P2H5 1018 aa11.86□□□□□ -0.51
NIPBL-202ENST00000448238 TRIM52Q96A61 297 aa11.85□□□□□ -0.51
NIPBL-202ENST00000448238 PTMSP20962 102 aa11.85□□□□□ -0.51
NIPBL-202ENST00000448238 CCDC136Q96JN2 1154 aa11.79□□□□□ -0.52
NIPBL-202ENST00000448238 FAM50AQ14320 339 aaKnown RBP11.77□□□□□ -0.53
NIPBL-202ENST00000448238 AMER1Q5JTC6 1135 aaPredicted RBP11.76□□□□□ -0.53
NIPBL-202ENST00000448238 CASC1Q6TDU7 716 aa11.76□□□□□ -0.53
NIPBL-202ENST00000448238 NISCHQ9Y2I1 1504 aa11.76□□□□□ -0.53
NIPBL-202ENST00000448238 KIAA2012Q0VF49 1180 aa11.76□□□□□ -0.53
NIPBL-202ENST00000448238 NEUROD1Q13562 356 aa11.75□□□□□ -0.53
NIPBL-202ENST00000448238 ACIN1Q9UKV3 1341 aaKnown RBP11.75□□□□□ -0.53
NIPBL-202ENST00000448238 SETQ01105 290 aaPredicted RBP11.75□□□□□ -0.53
NIPBL-202ENST00000448238 NOC3LQ8WTT2 800 aaKnown RBP11.73□□□□□ -0.53
NIPBL-202ENST00000448238 GOLGA6L1Q8N7Z2 621 aa11.73□□□□□ -0.53
NIPBL-202ENST00000448238 MSNP26038 577 aaKnown RBP11.72□□□□□ -0.53
NIPBL-202ENST00000448238 FKBP8Q14318 412 aa11.72□□□□□ -0.53
NIPBL-202ENST00000448238 PPM1GO15355 546 aaPredicted RBP11.71□□□□□ -0.53
NIPBL-202ENST00000448238 PNNQ9H307 717 aaKnown RBP11.71□□□□□ -0.53
NIPBL-202ENST00000448238 TULP1O00294 542 aaPredicted RBP11.68□□□□□ -0.54
NIPBL-202ENST00000448238 GOLGA6L4A6NEF3 574 aa11.66□□□□□ -0.54
NIPBL-202ENST00000448238 NCBP3Q53F19 620 aaKnown RBP11.65□□□□□ -0.55
NIPBL-202ENST00000448238 PRM3Q9NNZ6 103 aa11.64□□□□□ -0.55
NIPBL-202ENST00000448238 A0A0U1RQG5 324 aaPredicted RBP11.64□□□□□ -0.55
NIPBL-202ENST00000448238 PLCB2Q00722 1185 aa11.63□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms