RNA–Protein interactions for RNA: ENST00000611869.4

TCF3-220, Transcript of transcription factor 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene TCF3, Length 4,409 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCF3-220ENST00000611869 NISCHQ9Y2I1 1504 aa24.62■■□□□ 1.53
TCF3-220ENST00000611869 DCAF8L2P0C7V8 631 aa23.43■■□□□ 1.34
TCF3-220ENST00000611869 SHROOM4Q9ULL8 1493 aa22.67■■□□□ 1.22
TCF3-220ENST00000611869 SUPT5HO00267 1087 aaKnown RBP22.63■■□□□ 1.21
TCF3-220ENST00000611869 EHMT2Q96KQ7 1210 aa21.46■■□□□ 1.03
TCF3-220ENST00000611869 FAM9AQ8IZU1 332 aaPredicted RBP21.19■□□□□ 0.98
TCF3-220ENST00000611869 PCGF6Q9BYE7 350 aa20.96■□□□□ 0.95
TCF3-220ENST00000611869 TRIM41Q8WV44 630 aa20.94■□□□□ 0.94
TCF3-220ENST00000611869 CHIC1Q5VXU3 224 aa20.8■□□□□ 0.92
TCF3-220ENST00000611869 TTBK1Q5TCY1 1321 aaPredicted RBP20.69■□□□□ 0.9
TCF3-220ENST00000611869 ABCC9O60706 1549 aa20.65■□□□□ 0.9
TCF3-220ENST00000611869 LOC105371045A0A1W2PR82 267 aa20.59■□□□□ 0.89
TCF3-220ENST00000611869 ZCCHC6Q5VYS8 1495 aaKnown RBP20.54■□□□□ 0.88
TCF3-220ENST00000611869 APLP2Q06481 763 aa20.51■□□□□ 0.87
TCF3-220ENST00000611869 RANGAP1P46060 587 aaPredicted RBP20.49■□□□□ 0.87
TCF3-220ENST00000611869 UBTFP17480 764 aaKnown RBP20.4■□□□□ 0.86
TCF3-220ENST00000611869 PPARGC1BQ86YN6 1023 aaKnown RBP20.38■□□□□ 0.85
TCF3-220ENST00000611869 CCDC180Q9P1Z9 1646 aa20.36■□□□□ 0.85
TCF3-220ENST00000611869 PABPN1Q86U42 306 aaKnown RBP eCLIP20.27■□□□□ 0.841e-6■□□□□ 9.3
TCF3-220ENST00000611869 TRIM26Q12899 539 aaPredicted RBP20.21■□□□□ 0.83
TCF3-220ENST00000611869 CCER1Q8TC90 406 aaPredicted RBP20.19■□□□□ 0.82
TCF3-220ENST00000611869 HRCP23327 699 aa20.13■□□□□ 0.81
TCF3-220ENST00000611869 ZEB1P37275 1124 aaPredicted RBP20.13■□□□□ 0.81
TCF3-220ENST00000611869 SCRIBQ14160 1630 aa20.08■□□□□ 0.81
TCF3-220ENST00000611869 ATP1B4Q9UN42 357 aaPredicted RBP20.01■□□□□ 0.79
TCF3-220ENST00000611869 HNRNPUL2Q1KMD3 747 aaKnown RBP19.72■□□□□ 0.75
TCF3-220ENST00000611869 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.69■□□□□ 0.74
TCF3-220ENST00000611869 MYO15BQ96JP2 1530 aa19.67■□□□□ 0.74
TCF3-220ENST00000611869 RSF1Q96T23 1441 aaPredicted RBP19.67■□□□□ 0.74
TCF3-220ENST00000611869 ITGAEP38570 1179 aa19.65■□□□□ 0.74
TCF3-220ENST00000611869 DCAF1Q9Y4B6 1507 aa19.62■□□□□ 0.73
TCF3-220ENST00000611869 CENPBP07199 599 aaPredicted RBP19.58■□□□□ 0.73
TCF3-220ENST00000611869 CSRNP3Q8WYN3 585 aa19.55■□□□□ 0.72
TCF3-220ENST00000611869 YTHDC1Q96MU7 727 aaKnown RBP19.51■□□□□ 0.71
TCF3-220ENST00000611869 NACADO15069 1562 aa19.5■□□□□ 0.71
TCF3-220ENST00000611869 RB1CC1Q8TDY2 1594 aa19.49■□□□□ 0.71
TCF3-220ENST00000611869 CECR2Q9BXF3 1484 aa19.42■□□□□ 0.7
TCF3-220ENST00000611869 PELP1Q8IZL8 1130 aaKnown RBP19.37■□□□□ 0.69
TCF3-220ENST00000611869 FAM50AQ14320 339 aaKnown RBP19.23■□□□□ 0.67
TCF3-220ENST00000611869 DIEXFQ68CQ4 756 aaKnown RBP19.23■□□□□ 0.67
TCF3-220ENST00000611869 P3H3Q8IVL6 736 aa19.19■□□□□ 0.66
TCF3-220ENST00000611869 MROH2BQ7Z745 1585 aa19.17■□□□□ 0.66
TCF3-220ENST00000611869 BAZ1AQ9NRL2 1556 aaPredicted RBP19.15■□□□□ 0.66
TCF3-220ENST00000611869 WRNQ14191 1432 aaPredicted RBP eCLIP19.03■□□□□ 0.641e-6■■■■■ 58.5
TCF3-220ENST00000611869 BAZ1BQ9UIG0 1483 aaKnown RBP19.02■□□□□ 0.64
TCF3-220ENST00000611869 NEUROD1Q13562 356 aa19.02■□□□□ 0.63
TCF3-220ENST00000611869 CEP162Q5TB80 1403 aa18.97■□□□□ 0.63
TCF3-220ENST00000611869 ARID3CA6NKF2 412 aa18.96■□□□□ 0.63
TCF3-220ENST00000611869 FBLN2P98095 1184 aa18.95■□□□□ 0.62
TCF3-220ENST00000611869 CLIP1P30622 1438 aa18.95■□□□□ 0.62
TCF3-220ENST00000611869 ZNF316A6NFI3 1004 aaPredicted RBP18.94■□□□□ 0.62
TCF3-220ENST00000611869 EEA1Q15075 1411 aa18.93■□□□□ 0.62
TCF3-220ENST00000611869 POLR3GLQ9BT43 218 aa18.93■□□□□ 0.62
TCF3-220ENST00000611869 NEFLP07196 543 aa18.92■□□□□ 0.62
TCF3-220ENST00000611869 WIZO95785 1651 aa18.92■□□□□ 0.62
TCF3-220ENST00000611869 CCDC88BA6NC98 1476 aa18.91■□□□□ 0.62
TCF3-220ENST00000611869 TRIM52Q96A61 297 aa18.91■□□□□ 0.62
TCF3-220ENST00000611869 SOGA1O94964 1423 aa18.89■□□□□ 0.62
TCF3-220ENST00000611869 GOLGA3Q08378 1498 aa18.89■□□□□ 0.61
TCF3-220ENST00000611869 CNGB1Q14028 1251 aaPredicted RBP18.88■□□□□ 0.61
TCF3-220ENST00000611869 ABCC8Q09428 1581 aa18.86■□□□□ 0.61
TCF3-220ENST00000611869 TNIKQ9UKE5 1360 aa18.85■□□□□ 0.61
TCF3-220ENST00000611869 MYT1LQ9UL68 1186 aa18.85■□□□□ 0.61
TCF3-220ENST00000611869 CEP164Q9UPV0 1460 aa18.75■□□□□ 0.59
TCF3-220ENST00000611869 GTF3C3Q9Y5Q9 886 aa18.73■□□□□ 0.59
TCF3-220ENST00000611869 TOP2AP11388 1531 aaKnown RBP18.72■□□□□ 0.59
TCF3-220ENST00000611869 KIF27Q86VH2 1401 aa18.7■□□□□ 0.58
TCF3-220ENST00000611869 ZNF326Q5BKZ1 582 aaKnown RBP18.64■□□□□ 0.57
TCF3-220ENST00000611869 SMARCA4P51532 1647 aa18.63■□□□□ 0.57
TCF3-220ENST00000611869 ACIN1Q9UKV3 1341 aaKnown RBP18.63■□□□□ 0.57
TCF3-220ENST00000611869 ZNF777Q9ULD5 760 aaPredicted RBP18.63■□□□□ 0.57
TCF3-220ENST00000611869 SMARCA2P51531 1590 aa18.59■□□□□ 0.57
TCF3-220ENST00000611869 CHIC2Q9UKJ5 165 aa18.57■□□□□ 0.56
TCF3-220ENST00000611869 ERICH6Q7L0X2 663 aa18.57■□□□□ 0.56
TCF3-220ENST00000611869 ATAD2BQ9ULI0 1458 aa18.56■□□□□ 0.56
TCF3-220ENST00000611869 ANP32CO43423 234 aa18.56■□□□□ 0.56
TCF3-220ENST00000611869 CDK11AQ9UQ88 783 aaPredicted RBP18.55■□□□□ 0.56
TCF3-220ENST00000611869 MTUS2Q5JR59 1369 aa18.55■□□□□ 0.56
TCF3-220ENST00000611869 RUSC2Q8N2Y8 1516 aa18.51■□□□□ 0.55
TCF3-220ENST00000611869 CUX2O14529 1486 aa18.51■□□□□ 0.55
TCF3-220ENST00000611869 TONSLQ96HA7 1378 aa18.48■□□□□ 0.55
TCF3-220ENST00000611869 CARMIL1Q5VZK9 1371 aa18.46■□□□□ 0.55
TCF3-220ENST00000611869 BCANQ96GW7 911 aa18.46■□□□□ 0.55
TCF3-220ENST00000611869 DDX10Q13206 875 aaKnown RBP18.46■□□□□ 0.54
TCF3-220ENST00000611869 MIER1Q8N108 512 aa18.45■□□□□ 0.54
TCF3-220ENST00000611869 VPS8Q8N3P4 1428 aa18.44■□□□□ 0.54
TCF3-220ENST00000611869 CHMP7Q8WUX9 453 aaPredicted RBP18.44■□□□□ 0.54
TCF3-220ENST00000611869 KANK4Q5T7N3 995 aaPredicted RBP18.41■□□□□ 0.54
TCF3-220ENST00000611869 HIRIP3Q9BW71 556 aaPredicted RBP18.4■□□□□ 0.54
TCF3-220ENST00000611869 RRP7BPQ9NSQ0 103 aa18.39■□□□□ 0.53
TCF3-220ENST00000611869 RAPGEF2Q9Y4G8 1499 aa18.36■□□□□ 0.53
TCF3-220ENST00000611869 SLC4A1APQ9BWU0 796 aaKnown RBP18.33■□□□□ 0.53
TCF3-220ENST00000611869 SCAF1Q9H7N4 1312 aaKnown RBP18.32■□□□□ 0.52
TCF3-220ENST00000611869 CCNB3Q8WWL7 1395 aa18.32■□□□□ 0.52
TCF3-220ENST00000611869 CADPSQ9ULU8 1353 aa18.32■□□□□ 0.52
TCF3-220ENST00000611869 SIN3AQ96ST3 1273 aa18.27■□□□□ 0.52
TCF3-220ENST00000611869 TDRD9Q8NDG6 1382 aaKnown RBP18.27■□□□□ 0.52
TCF3-220ENST00000611869 FHAD1B1AJZ9 1412 aa18.26■□□□□ 0.51
TCF3-220ENST00000611869 TSPY4P0CV99 314 aa18.21■□□□□ 0.51
TCF3-220ENST00000611869 TSPY10P0CW01 314 aa18.21■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms