Protein–RNA interactions for Protein: P53999

SUB1, Activated RNA polymerase II transcriptional coactivator p15, humanhuman

Known RBP eCLIP

Length 127 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SUB1P53999 RPS3-209ENST00000527446 1306 ntAPPRIS P1 TSL 2 BASIC9.87□□□□□ -0.833e-33■■■■□ 25.3
SUB1P53999 RPS3-217ENST00000531188 2097 ntAPPRIS P1 TSL 1 (best) BASIC9.65□□□□□ -0.863e-33■■■■□ 25.3
SUB1P53999 RPS3-216ENST00000530721 796 ntTSL 39.47□□□□□ -0.893e-33■■■■□ 25.3
SUB1P53999 RPS3-218ENST00000532872 737 ntTSL 39.47□□□□□ -0.893e-33■■■■□ 25.3
SUB1P53999 RPS3-202ENST00000422465 903 ntTSL 28.34□□□□□ -1.073e-33■■■■□ 25.3
SUB1P53999 RPS3-219ENST00000534440 564 ntTSL 2 BASIC7.86□□□□□ -1.153e-33■■■■□ 25.3
SUB1P53999 RPS3-204ENST00000525690 421 ntTSL 37.86□□□□□ -1.153e-33■■■■□ 25.3
SUB1P53999 RPS3-210ENST00000528439 473 ntTSL 37.86□□□□□ -1.153e-33■■■■□ 25.3
SUB1P53999 RPS3-215ENST00000530170 531 ntTSL 57.43□□□□□ -1.223e-33■■■■□ 25.3
SUB1P53999 RPS3-205ENST00000525933 1307 ntTSL 57.03□□□□□ -1.283e-33■■■■□ 25.3
SUB1P53999 HADHA-201ENST00000380649 3037 ntAPPRIS P1 TSL 1 (best) BASIC8.58□□□□□ -1.048e-14■■■■□ 25.3
SUB1P53999 RPL34-205ENST00000503574 2627 ntTSL 27.33□□□□□ -1.245e-18■■■■□ 25.3
SUB1P53999 EIF3L-202ENST00000406934 2282 ntTSL 2 BASIC13.97□□□□□ -0.177e-9■■■■□ 25.2
SUB1P53999 EIF3L-214ENST00000624234 2091 ntAPPRIS P1 TSL 1 (best) BASIC8.95□□□□□ -0.987e-9■■■■□ 25.2
SUB1P53999 EIF3L-203ENST00000412331 3220 ntTSL 1 (best) BASIC5.78□□□□□ -1.487e-9■■■■□ 25.2
SUB1P53999 CCT3-201ENST00000295688 2150 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.488e-7■■■■□ 25.2
SUB1P53999 CCT3-206ENST00000368262 2048 ntTSL 211.3□□□□□ -0.68e-7■■■■□ 25.2
SUB1P53999 CCT3-204ENST00000368259 1815 ntTSL 2 BASIC10.61□□□□□ -0.718e-7■■■■□ 25.2
SUB1P53999 CCT3-203ENST00000368258 1885 ntTSL 29.87□□□□□ -0.838e-7■■■■□ 25.2
SUB1P53999 CCT3-205ENST00000368261 863 ntTSL 58.53□□□□□ -1.048e-7■■■■□ 25.2
SUB1P53999 PEBP1-202ENST00000542939 708 ntTSL 310.62□□□□□ -0.718e-8■■■■□ 25.2
SUB1P53999 GFM2-201ENST00000296805 3249 ntAPPRIS P1 TSL 1 (best) BASIC8.63□□□□□ -1.031e-7■■■■□ 25.2
SUB1P53999 GFM2-202ENST00000345239 2856 ntTSL 1 (best) BASIC7.25□□□□□ -1.251e-7■■■■□ 25.2
SUB1P53999 GFM2-207ENST00000509430 3047 ntAPPRIS P1 TSL 1 (best) BASIC6.93□□□□□ -1.31e-7■■■■□ 25.2
SUB1P53999 GFM2-210ENST00000515125 1125 ntTSL 34.78□□□□□ -1.641e-7■■■■□ 25.2
SUB1P53999 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC14.19□□□□□ -0.144e-8■■■■□ 25.2
SUB1P53999 FLOT2-204ENST00000577789 2503 ntTSL 513.08□□□□□ -0.324e-8■■■■□ 25.2
SUB1P53999 FLOT2-206ENST00000580805 2679 ntTSL 513.04□□□□□ -0.324e-8■■■■□ 25.2
SUB1P53999 FLOT2-201ENST00000394906 2756 ntTSL 5 BASIC12.43□□□□□ -0.424e-8■■■■□ 25.2
SUB1P53999 FLOT2-210ENST00000585169 2585 ntAPPRIS ALT1 TSL 5 BASIC11.55□□□□□ -0.564e-8■■■■□ 25.2
SUB1P53999 FLOT2-209ENST00000584569 266 ntTSL 311.15□□□□□ -0.624e-8■■■■□ 25.2
SUB1P53999 ACTG1-204ENST00000571721 813 ntTSL 513.72□□□□□ -0.213e-42■■■■□ 25.1
SUB1P53999 ACTG1-209ENST00000575659 742 ntTSL 312.39□□□□□ -0.433e-42■■■■□ 25.1
SUB1P53999 ACTG1-205ENST00000572105 1168 ntTSL 510.7□□□□□ -0.73e-42■■■■□ 25.1
SUB1P53999 ACTG1-202ENST00000570382 471 ntTSL 49.92□□□□□ -0.823e-42■■■■□ 25.1
SUB1P53999 ACTG1-211ENST00000575994 856 ntTSL 39.69□□□□□ -0.863e-42■■■■□ 25.1
SUB1P53999 ACTG1-203ENST00000571691 761 ntTSL 39.55□□□□□ -0.883e-42■■■■□ 25.1
SUB1P53999 ACTG1-213ENST00000576214 1024 ntTSL 59.2□□□□□ -0.943e-42■■■■□ 25.1
SUB1P53999 RTFDC1-203ENST00000395881 1572 ntTSL 2 BASIC11.59□□□□□ -0.552e-7■■■■□ 25.1
SUB1P53999 RTFDC1-201ENST00000023939 1745 ntTSL 2 BASIC11.49□□□□□ -0.572e-7■■■■□ 25.1
SUB1P53999 RTFDC1-202ENST00000357348 2212 ntAPPRIS P1 TSL 1 (best) BASIC10.01□□□□□ -0.812e-7■■■■□ 25.1
SUB1P53999 RTFDC1-207ENST00000477573 2193 ntTSL 1 (best)9.66□□□□□ -0.862e-7■■■■□ 25.1
SUB1P53999 FAM209A-202ENST00000481560 666 ntTSL 53.49□□□□□ -1.852e-7■■■■□ 25.1
SUB1P53999 PSMD7-206ENST00000568717 1395 ntTSL 214.67□□□□□ -0.064e-7■■■■□ 25.1
SUB1P53999 PKD1-220ENST00000487932 6464 ntTSL 514.17□□□□□ -0.141e-6■■■■□ 25.1
SUB1P53999 C8orf33-202ENST00000524395 1125 ntTSL 1 (best)13□□□□□ -0.332e-11■■■■□ 25.1
SUB1P53999 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.162e-9■■■■□ 25
SUB1P53999 COX5B-202ENST00000464949 613 ntTSL 514.93□□□□□ -0.022e-9■■■■□ 25
SUB1P53999 IPO5-202ENST00000357602 4335 ntAPPRIS P1 TSL 510.45□□□□□ -0.747e-10■■■■□ 25
SUB1P53999 IPO5-223ENST00000491555 3688 ntTSL 24.2□□□□□ -1.747e-10■■■■□ 25
SUB1P53999 F11R-202ENST00000368026 4835 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.122e-11■■■■□ 25
SUB1P53999 F11R-206ENST00000621309 4770 ntTSL 5 BASIC14.58□□□□□ -0.072e-11■■■■□ 25
SUB1P53999 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC14.18□□□□□ -0.141e-16■■■■□ 25
SUB1P53999 IARS-202ENST00000375643 4656 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.496e-7■■■■□ 25
SUB1P53999 IARS-205ENST00000443024 4341 ntTSL 5 BASIC5.6□□□□□ -1.516e-7■■■■□ 25
SUB1P53999 IARS-206ENST00000447699 4186 ntTSL 1 (best) BASIC5.49□□□□□ -1.536e-7■■■■□ 25
SUB1P53999 IARS-213ENST00000627121 4587 ntTSL 5 BASIC4.94□□□□□ -1.626e-7■■■■□ 25
SUB1P53999 PRRC2B-208ENST00000465931 5366 ntTSL 211.16□□□□□ -0.627e-9■■■■□ 24.9
SUB1P53999 PRRC2B-201ENST00000320547 4950 ntTSL 210.97□□□□□ -0.657e-9■■■■□ 24.9
SUB1P53999 PRRC2B-202ENST00000357304 11042 ntAPPRIS P1 TSL 5 BASIC9.97□□□□□ -0.817e-9■■■■□ 24.9
SUB1P53999 PRRC2B-203ENST00000405995 9157 ntTSL 5 BASIC9.42□□□□□ -0.97e-9■■■■□ 24.9
SUB1P53999 LSM5-204ENST00000409909 740 ntTSL 2 BASIC13.19□□□□□ -0.32e-7■■■■□ 24.9
SUB1P53999 LSM5-207ENST00000410044 687 ntTSL 3 BASIC11.87□□□□□ -0.512e-7■■■■□ 24.9
SUB1P53999 LSM5-201ENST00000223084 1295 ntTSL 29.62□□□□□ -0.872e-7■■■■□ 24.9
SUB1P53999 LSM5-208ENST00000450169 2258 ntAPPRIS P1 TSL 1 (best) BASIC6.78□□□□□ -1.322e-7■■■■□ 24.9
SUB1P53999 LSM5-210ENST00000480956 1736 ntTSL 36.65□□□□□ -1.342e-7■■■■□ 24.9
SUB1P53999 LSM5-202ENST00000409292 538 ntTSL 2 BASIC5.64□□□□□ -1.512e-7■■■■□ 24.9
SUB1P53999 LSM5-203ENST00000409782 649 ntTSL 5 BASIC4.38□□□□□ -1.712e-7■■■■□ 24.9
SUB1P53999 LSM5-205ENST00000409952 687 ntTSL 4 BASIC3.86□□□□□ -1.792e-7■■■■□ 24.9
SUB1P53999 LSM5-206ENST00000409987 504 ntTSL 5 BASIC3.86□□□□□ -1.792e-7■■■■□ 24.9
SUB1P53999 ANXA1-207ENST00000491192 1400 ntTSL 1 (best)4.53□□□□□ -1.685e-8■■■■□ 24.9
SUB1P53999 ANXA1-201ENST00000257497 1509 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.745e-8■■■■□ 24.9
SUB1P53999 ANXA1-202ENST00000376911 2209 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.785e-8■■■■□ 24.9
SUB1P53999 RNASEH2A-203ENST00000590279 696 ntTSL 316.83■□□□□ 0.281e-9■■■■□ 24.9
SUB1P53999 RNASEH2A-202ENST00000590121 859 ntTSL 215.64■□□□□ 0.091e-9■■■■□ 24.9
SUB1P53999 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.131e-9■■■■□ 24.9
SUB1P53999 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.331e-9■■■■□ 24.9
SUB1P53999 CCDC28A-202ENST00000611852 1505 ntTSL 1 (best) BASIC12.69□□□□□ -0.381e-9■■■■□ 24.9
SUB1P53999 CCDC28A-201ENST00000332797 1496 ntTSL 1 (best) BASIC12.2□□□□□ -0.461e-9■■■■□ 24.9
SUB1P53999 RNASEH2A-204ENST00000593017 1487 ntTSL 212.06□□□□□ -0.481e-9■■■■□ 24.9
SUB1P53999 RNASEH2A-205ENST00000639767 647 ntTSL 511.77□□□□□ -0.531e-9■■■■□ 24.9
SUB1P53999 DCAF7-202ENST00000431926 1354 ntTSL 1 (best)11.11□□□□□ -0.631e-9■■■■□ 24.9
SUB1P53999 DCAF7-205ENST00000614556 6340 ntAPPRIS P1 TSL 1 (best) BASIC9.61□□□□□ -0.871e-9■■■■□ 24.9
SUB1P53999 DCAF7-203ENST00000580091 325 ntTSL 36.82□□□□□ -1.321e-9■■■■□ 24.9
SUB1P53999 ATP1A1-205ENST00000440951 579 ntTSL 54.7□□□□□ -1.669e-26■■■■□ 24.9
SUB1P53999 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.392e-6■■■■□ 24.9
SUB1P53999 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.342e-6■■■■□ 24.9
SUB1P53999 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC13.37□□□□□ -0.272e-6■■■■□ 24.9
SUB1P53999 ZFAS1-207ENST00000458653 596 ntTSL 221.44■■□□□ 1.022e-10■■■■□ 24.9
SUB1P53999 ZFAS1-202ENST00000371743 1008 ntTSL 1 (best)18.73■□□□□ 0.592e-10■■■■□ 24.9
SUB1P53999 ZFAS1-203ENST00000417721 860 ntTSL 1 (best)17.48■□□□□ 0.392e-10■■■■□ 24.9
SUB1P53999 ZFAS1-205ENST00000441722 946 ntTSL 1 (best)16.54■□□□□ 0.242e-10■■■■□ 24.9
SUB1P53999 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC16.54■□□□□ 0.242e-10■■■■□ 24.9
SUB1P53999 ZFAS1-209ENST00000620594 508 ntTSL 35.91□□□□□ -1.462e-10■■■■□ 24.9
SUB1P53999 ZFAS1-204ENST00000428008 566 ntTSL 25.1□□□□□ -1.592e-10■■■■□ 24.9
SUB1P53999 ZFAS1-201ENST00000326677 504 ntTSL 1 (best)5.04□□□□□ -1.62e-10■■■■□ 24.9
SUB1P53999 MKRN1-214ENST00000495305 1390 ntTSL 221.04■□□□□ 0.962e-7■■■■□ 24.9
SUB1P53999 MKRN1-202ENST00000443720 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.822e-7■■■■□ 24.9
SUB1P53999 MKRN1-215ENST00000496169 1625 ntTSL 217.6■□□□□ 0.412e-7■■■■□ 24.9
SUB1P53999 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC16.05■□□□□ 0.162e-7■■■■□ 24.9
Retrieved 100 of 11,644 protein–RNA pairs in 124.7 ms