RNA–Protein interactions for RNA: ENST00000368262.7

CCT3-206, Transcript of chaperonin containing TCP1 subunit 3, humanhuman

TSL 2

Gene CCT3, Length 2,048 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCT3-206ENST00000368262 NISCHQ9Y2I1 1504 aa27.91■■■□□ 2.06
CCT3-206ENST00000368262 SHROOM4Q9ULL8 1493 aa23.87■■□□□ 1.41
CCT3-206ENST00000368262 ZCCHC6Q5VYS8 1495 aaKnown RBP23.76■■□□□ 1.39
CCT3-206ENST00000368262 HRCP23327 699 aa23.66■■□□□ 1.38
CCT3-206ENST00000368262 CCDC180Q9P1Z9 1646 aa23.64■■□□□ 1.38
CCT3-206ENST00000368262 SUPT5HO00267 1087 aaKnown RBP23.63■■□□□ 1.37
CCT3-206ENST00000368262 MYO15BQ96JP2 1530 aa23.55■■□□□ 1.36
CCT3-206ENST00000368262 CHIC1Q5VXU3 224 aa23.42■■□□□ 1.34
CCT3-206ENST00000368262 DCAF1Q9Y4B6 1507 aa23.2■■□□□ 1.31
CCT3-206ENST00000368262 PCGF6Q9BYE7 350 aa23.1■■□□□ 1.29
CCT3-206ENST00000368262 PPARGC1BQ86YN6 1023 aaKnown RBP22.91■■□□□ 1.26
CCT3-206ENST00000368262 TRIM26Q12899 539 aaPredicted RBP22.68■■□□□ 1.22
CCT3-206ENST00000368262 LOC105371045A0A1W2PR82 267 aa22.61■■□□□ 1.21
CCT3-206ENST00000368262 ABCC9O60706 1549 aa22.57■■□□□ 1.2
CCT3-206ENST00000368262 DCAF8L2P0C7V8 631 aa22.52■■□□□ 1.19
CCT3-206ENST00000368262 ZEB1P37275 1124 aaPredicted RBP22.5■■□□□ 1.19
CCT3-206ENST00000368262 PELP1Q8IZL8 1130 aaKnown RBP22.46■■□□□ 1.19
CCT3-206ENST00000368262 RSF1Q96T23 1441 aaPredicted RBP22.23■■□□□ 1.15
CCT3-206ENST00000368262 RB1CC1Q8TDY2 1594 aa22.18■■□□□ 1.14
CCT3-206ENST00000368262 SCAF1Q9H7N4 1312 aaKnown RBP22.09■■□□□ 1.13
CCT3-206ENST00000368262 TRIM41Q8WV44 630 aa22.04■■□□□ 1.12
CCT3-206ENST00000368262 SCRIBQ14160 1630 aa22.03■■□□□ 1.12
CCT3-206ENST00000368262 FAM9AQ8IZU1 332 aaPredicted RBP21.77■■□□□ 1.07
CCT3-206ENST00000368262 EIF4G1Q04637 1599 aaKnown RBP21.74■■□□□ 1.07
CCT3-206ENST00000368262 ACIN1Q9UKV3 1341 aaKnown RBP21.73■■□□□ 1.07
CCT3-206ENST00000368262 MROH2BQ7Z745 1585 aa21.68■■□□□ 1.06
CCT3-206ENST00000368262 CECR2Q9BXF3 1484 aa21.63■■□□□ 1.05
CCT3-206ENST00000368262 BAZ1AQ9NRL2 1556 aaPredicted RBP21.63■■□□□ 1.05
CCT3-206ENST00000368262 NACADO15069 1562 aa21.63■■□□□ 1.05
CCT3-206ENST00000368262 WIZO95785 1651 aa21.62■■□□□ 1.05
CCT3-206ENST00000368262 WRNQ14191 1432 aaPredicted RBP eCLIP21.59■■□□□ 1.05
CCT3-206ENST00000368262 NEUROD1Q13562 356 aa21.59■■□□□ 1.05
CCT3-206ENST00000368262 MYT1Q01538 1121 aa21.54■■□□□ 1.04
CCT3-206ENST00000368262 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.53■■□□□ 1.04
CCT3-206ENST00000368262 CCER1Q8TC90 406 aaPredicted RBP21.52■■□□□ 1.04
CCT3-206ENST00000368262 CENPBP07199 599 aaPredicted RBP21.5■■□□□ 1.03
CCT3-206ENST00000368262 DIEXFQ68CQ4 756 aaKnown RBP21.46■■□□□ 1.03
CCT3-206ENST00000368262 EHMT2Q96KQ7 1210 aa21.44■■□□□ 1.02
CCT3-206ENST00000368262 GTF3C3Q9Y5Q9 886 aa21.4■■□□□ 1.02
CCT3-206ENST00000368262 TOP2AP11388 1531 aaKnown RBP21.35■■□□□ 1.01
CCT3-206ENST00000368262 CEP162Q5TB80 1403 aa21.33■■□□□ 1.01
CCT3-206ENST00000368262 TNIKQ9UKE5 1360 aa21.31■■□□□ 1
CCT3-206ENST00000368262 EEA1Q15075 1411 aa21.27■■□□□ 1
CCT3-206ENST00000368262 ABCC8Q09428 1581 aa21.26■□□□□ 0.99
CCT3-206ENST00000368262 CCDC88BA6NC98 1476 aa21.26■□□□□ 0.99
CCT3-206ENST00000368262 SMARCA2P51531 1590 aa21.24■□□□□ 0.99
CCT3-206ENST00000368262 ZNF316A6NFI3 1004 aaPredicted RBP21.22■□□□□ 0.99
CCT3-206ENST00000368262 SMARCA4P51532 1647 aa21.18■□□□□ 0.98
CCT3-206ENST00000368262 SOGA1O94964 1423 aa21.13■□□□□ 0.97
CCT3-206ENST00000368262 GOLGA3Q08378 1498 aa21.1■□□□□ 0.97
CCT3-206ENST00000368262 CSRNP3Q8WYN3 585 aa21.03■□□□□ 0.96
CCT3-206ENST00000368262 KIF21BO75037 1637 aa21.02■□□□□ 0.96
CCT3-206ENST00000368262 RUSC2Q8N2Y8 1516 aa21■□□□□ 0.95
CCT3-206ENST00000368262 UNC13AQ9UPW8 1703 aa20.94■□□□□ 0.94
CCT3-206ENST00000368262 TTBK1Q5TCY1 1321 aaPredicted RBP20.94■□□□□ 0.94
CCT3-206ENST00000368262 MIER1Q8N108 512 aa20.93■□□□□ 0.94
CCT3-206ENST00000368262 CEP164Q9UPV0 1460 aa20.92■□□□□ 0.94
CCT3-206ENST00000368262 UBTFP17480 764 aaKnown RBP20.87■□□□□ 0.93
CCT3-206ENST00000368262 BAZ1BQ9UIG0 1483 aaKnown RBP20.86■□□□□ 0.93
CCT3-206ENST00000368262 VPS8Q8N3P4 1428 aa20.85■□□□□ 0.93
CCT3-206ENST00000368262 YTHDC1Q96MU7 727 aaKnown RBP20.84■□□□□ 0.93
CCT3-206ENST00000368262 CLSPNQ9HAW4 1339 aa20.84■□□□□ 0.93
CCT3-206ENST00000368262 PEG3Q9GZU2 1588 aa20.83■□□□□ 0.92
CCT3-206ENST00000368262 CLIP1P30622 1438 aa20.81■□□□□ 0.92
CCT3-206ENST00000368262 SYNJ1O43426 1573 aa20.8■□□□□ 0.92
CCT3-206ENST00000368262 HNRNPUL2Q1KMD3 747 aaKnown RBP20.72■□□□□ 0.91
CCT3-206ENST00000368262 RAPGEF2Q9Y4G8 1499 aa20.62■□□□□ 0.89
CCT3-206ENST00000368262 DHX57Q6P158 1386 aaKnown RBP20.62■□□□□ 0.89
CCT3-206ENST00000368262 BICRAQ9NZM4 1560 aa20.57■□□□□ 0.88
CCT3-206ENST00000368262 ERICH3Q5RHP9 1530 aa20.57■□□□□ 0.88
CCT3-206ENST00000368262 CUX2O14529 1486 aa20.55■□□□□ 0.88
CCT3-206ENST00000368262 TOP2BQ02880 1626 aa20.55■□□□□ 0.88
CCT3-206ENST00000368262 APLP2Q06481 763 aa20.55■□□□□ 0.88
CCT3-206ENST00000368262 SUPT16HQ9Y5B9 1047 aaKnown RBP20.54■□□□□ 0.88
CCT3-206ENST00000368262 BIVM-ERCC5R4GMW8 1640 aa20.53■□□□□ 0.88
CCT3-206ENST00000368262 ARAP1Q96P48 1450 aa20.5■□□□□ 0.87
CCT3-206ENST00000368262 RRBP1Q9P2E9 1410 aaKnown RBP20.49■□□□□ 0.87
CCT3-206ENST00000368262 PRXQ9BXM0 1461 aa20.45■□□□□ 0.86
CCT3-206ENST00000368262 ATAD2BQ9ULI0 1458 aa20.43■□□□□ 0.86
CCT3-206ENST00000368262 TSHZ2Q9NRE2 1034 aa20.39■□□□□ 0.85
CCT3-206ENST00000368262 ANP32EQ9BTT0 268 aa20.29■□□□□ 0.84
CCT3-206ENST00000368262 KANK4Q5T7N3 995 aaPredicted RBP20.27■□□□□ 0.84
CCT3-206ENST00000368262 CCNB3Q8WWL7 1395 aa20.27■□□□□ 0.83
CCT3-206ENST00000368262 MAPKBP1O60336 1514 aa20.26■□□□□ 0.83
CCT3-206ENST00000368262 MAP3K1Q13233 1512 aa20.23■□□□□ 0.83
CCT3-206ENST00000368262 ARHGAP35Q9NRY4 1499 aa20.2■□□□□ 0.82
CCT3-206ENST00000368262 PABPN1Q86U42 306 aaKnown RBP eCLIP20.17■□□□□ 0.82
CCT3-206ENST00000368262 CUX1P39880 1505 aa20.17■□□□□ 0.82
CCT3-206ENST00000368262 RANGAP1P46060 587 aaPredicted RBP20.15■□□□□ 0.82
CCT3-206ENST00000368262 KIF27Q86VH2 1401 aa20.15■□□□□ 0.82
CCT3-206ENST00000368262 TIAM1Q13009 1591 aa20.14■□□□□ 0.82
CCT3-206ENST00000368262 RAB3GAP2Q9H2M9 1393 aa20.14■□□□□ 0.81
CCT3-206ENST00000368262 WDR97A6NE52 1622 aa20.09■□□□□ 0.81
CCT3-206ENST00000368262 HMGXB3Q12766 1538 aa20.08■□□□□ 0.81
CCT3-206ENST00000368262 KCNH8Q96L42 1107 aa20.07■□□□□ 0.8
CCT3-206ENST00000368262 SETD5Q9C0A6 1442 aa20.07■□□□□ 0.8
CCT3-206ENST00000368262 CFAP43Q8NDM7 1665 aa20.06■□□□□ 0.8
CCT3-206ENST00000368262 PRDM2Q13029 1718 aa20.04■□□□□ 0.8
CCT3-206ENST00000368262 TIMELESSQ9UNS1 1208 aa20.03■□□□□ 0.8
CCT3-206ENST00000368262 PPP1R15AO75807 674 aaPredicted RBP20.01■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 48.4 ms