RNA–Protein interactions for RNA: ENST00000617445.4

CCDC28A-203, Transcript of coiled-coil domain containing 28A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28A, Length 1,240 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-203ENST00000617445 NISCHQ9Y2I1 1504 aa47.17■■■■■ 5.14
CCDC28A-203ENST00000617445 CCDC180Q9P1Z9 1646 aa42.2■■■■■ 4.35
CCDC28A-203ENST00000617445 ABCC9O60706 1549 aa41.75■■■■■ 4.27
CCDC28A-203ENST00000617445 RB1CC1Q8TDY2 1594 aa40.01■■■■□ 3.99
CCDC28A-203ENST00000617445 NACADO15069 1562 aa39.84■■■■□ 3.97
CCDC28A-203ENST00000617445 DCAF8L2P0C7V8 631 aa39.63■■■■□ 3.93
CCDC28A-203ENST00000617445 MYO15BQ96JP2 1530 aa39.46■■■■□ 3.91
CCDC28A-203ENST00000617445 ZCCHC6Q5VYS8 1495 aaKnown RBP39.16■■■■□ 3.86
CCDC28A-203ENST00000617445 DCAF1Q9Y4B6 1507 aa39.07■■■■□ 3.84
CCDC28A-203ENST00000617445 UNC13AQ9UPW8 1703 aa39.03■■■■□ 3.84
CCDC28A-203ENST00000617445 PABPN1Q86U42 306 aaKnown RBP eCLIP38.93■■■■□ 3.82
CCDC28A-203ENST00000617445 DNAJC5BQ9UF47 199 aa38.84■■■■□ 3.81
CCDC28A-203ENST00000617445 BICRAQ9NZM4 1560 aa38.75■■■■□ 3.79
CCDC28A-203ENST00000617445 SHROOM4Q9ULL8 1493 aa38.42■■■■□ 3.74
CCDC28A-203ENST00000617445 SCRIBQ14160 1630 aa38.37■■■■□ 3.73
CCDC28A-203ENST00000617445 EIF4G1Q04637 1599 aaKnown RBP37.8■■■■□ 3.64
CCDC28A-203ENST00000617445 CC2D2AQ9P2K1 1620 aa37.77■■■■□ 3.64
CCDC28A-203ENST00000617445 CECR2Q9BXF3 1484 aa37.64■■■■□ 3.62
CCDC28A-203ENST00000617445 NCAPD3P42695 1498 aa36.77■■■■□ 3.48
CCDC28A-203ENST00000617445 SMARCA4P51532 1647 aa36.7■■■■□ 3.47
CCDC28A-203ENST00000617445 ATAD2BQ9ULI0 1458 aa36.67■■■■□ 3.46
CCDC28A-203ENST00000617445 SMARCA2P51531 1590 aa36.63■■■■□ 3.45
CCDC28A-203ENST00000617445 BAZ1AQ9NRL2 1556 aaPredicted RBP36.62■■■■□ 3.45
CCDC28A-203ENST00000617445 HMGXB3Q12766 1538 aa36.52■■■■□ 3.44
CCDC28A-203ENST00000617445 PEG3Q9GZU2 1588 aa36.4■■■■□ 3.42
CCDC28A-203ENST00000617445 BAZ1BQ9UIG0 1483 aaKnown RBP36.33■■■■□ 3.41
CCDC28A-203ENST00000617445 MROH2BQ7Z745 1585 aa36.29■■■■□ 3.4
CCDC28A-203ENST00000617445 ERCC6Q03468 1493 aa36.09■■■■□ 3.37
CCDC28A-203ENST00000617445 CUX2O14529 1486 aa35.96■■■■□ 3.35
CCDC28A-203ENST00000617445 NESP48681 1621 aa35.95■■■■□ 3.35
CCDC28A-203ENST00000617445 LAMC3Q9Y6N6 1575 aa35.88■■■■□ 3.33
CCDC28A-203ENST00000617445 WIZO95785 1651 aa35.87■■■■□ 3.33
CCDC28A-203ENST00000617445 RSF1Q96T23 1441 aaPredicted RBP35.71■■■■□ 3.31
CCDC28A-203ENST00000617445 PDS5BQ9NTI5 1447 aa35.69■■■■□ 3.3
CCDC28A-203ENST00000617445 CADPSQ9ULU8 1353 aa35.66■■■■□ 3.3
CCDC28A-203ENST00000617445 THOC2Q8NI27 1593 aaKnown RBP35.55■■■■□ 3.28
CCDC28A-203ENST00000617445 DNAJC5Q9H3Z4 198 aa35.53■■■■□ 3.28
CCDC28A-203ENST00000617445 KIF21AQ7Z4S6 1674 aa35.52■■■■□ 3.28
CCDC28A-203ENST00000617445 TOP2AP11388 1531 aaKnown RBP35.5■■■■□ 3.27
CCDC28A-203ENST00000617445 CFTRP13569 1480 aa35.32■■■■□ 3.24
CCDC28A-203ENST00000617445 MRC2Q9UBG0 1479 aa35.3■■■■□ 3.24
CCDC28A-203ENST00000617445 CEP164Q9UPV0 1460 aa35.23■■■■□ 3.23
CCDC28A-203ENST00000617445 FANCD2Q9BXW9 1451 aa35.22■■■■□ 3.23
CCDC28A-203ENST00000617445 WDR62O43379 1518 aa35.2■■■■□ 3.23
CCDC28A-203ENST00000617445 CCDC88BA6NC98 1476 aa35.08■■■■□ 3.21
CCDC28A-203ENST00000617445 PRDM2Q13029 1718 aa35■■■■□ 3.19
CCDC28A-203ENST00000617445 URB2Q14146 1524 aaKnown RBP34.87■■■■□ 3.17
CCDC28A-203ENST00000617445 ABCC8Q09428 1581 aa34.66■■■■□ 3.14
CCDC28A-203ENST00000617445 TOPBP1Q92547 1522 aa34.59■■■■□ 3.13
CCDC28A-203ENST00000617445 IFT140Q96RY7 1462 aa34.54■■■■□ 3.12
CCDC28A-203ENST00000617445 DNMBPQ6XZF7 1577 aa34.5■■■■□ 3.11
CCDC28A-203ENST00000617445 OSCARQ8IYS5 282 aa34.4■■■■□ 3.1
CCDC28A-203ENST00000617445 SUPT5HO00267 1087 aaKnown RBP34.36■■■■□ 3.09
CCDC28A-203ENST00000617445 ZNF608Q9ULD9 1512 aaPredicted RBP34.35■■■■□ 3.09
CCDC28A-203ENST00000617445 POLA1P09884 1462 aaPredicted RBP34.25■■■■□ 3.07
CCDC28A-203ENST00000617445 TARBP1Q13395 1621 aaKnown RBP34.24■■■■□ 3.07
CCDC28A-203ENST00000617445 EIF4G3O43432 1585 aaKnown RBP34.2■■■■□ 3.07
CCDC28A-203ENST00000617445 SOGA1O94964 1423 aa34.13■■■■□ 3.05
CCDC28A-203ENST00000617445 AQRO60306 1485 aaKnown RBP eCLIP34.12■■■■□ 3.05
CCDC28A-203ENST00000617445 CUX1P39880 1505 aa34.09■■■■□ 3.05
CCDC28A-203ENST00000617445 FGD5Q6ZNL6 1462 aa34.07■■■■□ 3.05
CCDC28A-203ENST00000617445 RAD54L2Q9Y4B4 1467 aa34.07■■■■□ 3.05
CCDC28A-203ENST00000617445 WDR97A6NE52 1622 aa34.03■■■■□ 3.04
CCDC28A-203ENST00000617445 TRIM41Q8WV44 630 aa34.02■■■■□ 3.04
CCDC28A-203ENST00000617445 TDRD9Q8NDG6 1382 aaKnown RBP33.98■■■■□ 3.03
CCDC28A-203ENST00000617445 CHD1O14646 1710 aa33.88■■■■□ 3.01
CCDC28A-203ENST00000617445 FBLN2P98095 1184 aa33.85■■■■□ 3.01
CCDC28A-203ENST00000617445 GRIN2BQ13224 1484 aa33.81■■■■□ 3
CCDC28A-203ENST00000617445 RIMBP3CA6NJZ7 1639 aa33.8■■■■□ 3
CCDC28A-203ENST00000617445 RIMBP3BA6NNM3 1639 aa33.8■■■■□ 3
CCDC28A-203ENST00000617445 RIMBP3Q9UFD9 1639 aa33.8■■■■□ 3
CCDC28A-203ENST00000617445 MAGI1Q96QZ7 1491 aaPredicted RBP33.79■■■■□ 3
CCDC28A-203ENST00000617445 SNAPC4Q5SXM2 1469 aa33.78■■■■□ 3
CCDC28A-203ENST00000617445 ABCA10Q8WWZ4 1543 aa33.76■■■■□ 3
CCDC28A-203ENST00000617445 ARHGEF11O15085 1522 aa33.75■■■□□ 2.99
CCDC28A-203ENST00000617445 GAPVD1Q14C86 1478 aa33.72■■■□□ 2.99
CCDC28A-203ENST00000617445 WRNQ14191 1432 aaPredicted RBP eCLIP33.71■■■□□ 2.99
CCDC28A-203ENST00000617445 CHMP7Q8WUX9 453 aaPredicted RBP33.71■■■□□ 2.99
CCDC28A-203ENST00000617445 TOP2BQ02880 1626 aa33.68■■■□□ 2.98
CCDC28A-203ENST00000617445 BIVM-ERCC5R4GMW8 1640 aa33.67■■■□□ 2.98
CCDC28A-203ENST00000617445 SYNJ2O15056 1496 aa33.65■■■□□ 2.98
CCDC28A-203ENST00000617445 PBRM1Q86U86 1689 aa33.64■■■□□ 2.98
CCDC28A-203ENST00000617445 ABCA5Q8WWZ7 1642 aa33.63■■■□□ 2.97
CCDC28A-203ENST00000617445 SYNJ1O43426 1573 aa33.59■■■□□ 2.97
CCDC28A-203ENST00000617445 CLASP1Q7Z460 1538 aa33.53■■■□□ 2.96
CCDC28A-203ENST00000617445 CYB5RLQ6IPT4 315 aa33.5■■■□□ 2.95
CCDC28A-203ENST00000617445 ARAP1Q96P48 1450 aa33.43■■■□□ 2.94
CCDC28A-203ENST00000617445 ERICH3Q5RHP9 1530 aa33.36■■■□□ 2.93
CCDC28A-203ENST00000617445 GRIN2AQ12879 1464 aa33.34■■■□□ 2.93
CCDC28A-203ENST00000617445 ADAMTS12P58397 1594 aa33.34■■■□□ 2.93
CCDC28A-203ENST00000617445 FHAD1B1AJZ9 1412 aa33.33■■■□□ 2.93
CCDC28A-203ENST00000617445 NUP160Q12769 1436 aa33.23■■■□□ 2.91
CCDC28A-203ENST00000617445 CEP170Q5SW79 1584 aa33.16■■■□□ 2.9
CCDC28A-203ENST00000617445 KIF27Q86VH2 1401 aa33.08■■■□□ 2.89
CCDC28A-203ENST00000617445 SHROOM2Q13796 1616 aa33.04■■■□□ 2.88
CCDC28A-203ENST00000617445 TRHP20396 242 aaPredicted RBP33.02■■■□□ 2.88
CCDC28A-203ENST00000617445 IGF1RP08069 1367 aa33■■■□□ 2.87
CCDC28A-203ENST00000617445 ERCC6L2Q5T890 1561 aa32.96■■■□□ 2.87
CCDC28A-203ENST00000617445 CUL7Q14999 1698 aa32.94■■■□□ 2.86
CCDC28A-203ENST00000617445 JPH4Q96JJ6 628 aa32.93■■■□□ 2.86
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms