RNA–Protein interactions for RNA: ENST00000332797.10

CCDC28A-201, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,496 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-201ENST00000332797 NISCHQ9Y2I1 1504 aa38.28■■■■□ 3.72
CCDC28A-201ENST00000332797 CCDC180Q9P1Z9 1646 aa33.97■■■■□ 3.03
CCDC28A-201ENST00000332797 ABCC9O60706 1549 aa33.09■■■□□ 2.89
CCDC28A-201ENST00000332797 DCAF8L2P0C7V8 631 aa31.95■■■□□ 2.7
CCDC28A-201ENST00000332797 ZCCHC6Q5VYS8 1495 aaKnown RBP31.94■■■□□ 2.7
CCDC28A-201ENST00000332797 RB1CC1Q8TDY2 1594 aa31.89■■■□□ 2.7
CCDC28A-201ENST00000332797 NACADO15069 1562 aa31.87■■■□□ 2.69
CCDC28A-201ENST00000332797 MYO15BQ96JP2 1530 aa31.71■■■□□ 2.67
CCDC28A-201ENST00000332797 DCAF1Q9Y4B6 1507 aa31.65■■■□□ 2.66
CCDC28A-201ENST00000332797 UNC13AQ9UPW8 1703 aa31.19■■■□□ 2.58
CCDC28A-201ENST00000332797 SCRIBQ14160 1630 aa31.06■■■□□ 2.56
CCDC28A-201ENST00000332797 PABPN1Q86U42 306 aaKnown RBP eCLIP30.94■■■□□ 2.54
CCDC28A-201ENST00000332797 BICRAQ9NZM4 1560 aa30.91■■■□□ 2.54
CCDC28A-201ENST00000332797 SHROOM4Q9ULL8 1493 aa30.58■■■□□ 2.49
CCDC28A-201ENST00000332797 DNAJC5BQ9UF47 199 aa30.16■■■□□ 2.42
CCDC28A-201ENST00000332797 EIF4G1Q04637 1599 aaKnown RBP30.09■■■□□ 2.41
CCDC28A-201ENST00000332797 CC2D2AQ9P2K1 1620 aa29.93■■■□□ 2.38
CCDC28A-201ENST00000332797 CECR2Q9BXF3 1484 aa29.81■■■□□ 2.36
CCDC28A-201ENST00000332797 SMARCA4P51532 1647 aa29.69■■■□□ 2.34
CCDC28A-201ENST00000332797 BAZ1AQ9NRL2 1556 aaPredicted RBP29.67■■■□□ 2.34
CCDC28A-201ENST00000332797 MROH2BQ7Z745 1585 aa29.52■■■□□ 2.32
CCDC28A-201ENST00000332797 ATAD2BQ9ULI0 1458 aa29.46■■■□□ 2.31
CCDC28A-201ENST00000332797 SMARCA2P51531 1590 aa29.45■■■□□ 2.3
CCDC28A-201ENST00000332797 NCAPD3P42695 1498 aa29.39■■■□□ 2.3
CCDC28A-201ENST00000332797 PEG3Q9GZU2 1588 aa29.36■■■□□ 2.29
CCDC28A-201ENST00000332797 HMGXB3Q12766 1538 aa29.3■■■□□ 2.28
CCDC28A-201ENST00000332797 BAZ1BQ9UIG0 1483 aaKnown RBP29.25■■■□□ 2.27
CCDC28A-201ENST00000332797 RSF1Q96T23 1441 aaPredicted RBP29.24■■■□□ 2.27
CCDC28A-201ENST00000332797 WIZO95785 1651 aa29.23■■■□□ 2.27
CCDC28A-201ENST00000332797 TOP2AP11388 1531 aaKnown RBP28.92■■■□□ 2.22
CCDC28A-201ENST00000332797 NESP48681 1621 aa28.68■■■□□ 2.18
CCDC28A-201ENST00000332797 SUPT5HO00267 1087 aaKnown RBP28.66■■■□□ 2.18
CCDC28A-201ENST00000332797 LAMC3Q9Y6N6 1575 aa28.62■■■□□ 2.17
CCDC28A-201ENST00000332797 CCDC88BA6NC98 1476 aa28.57■■■□□ 2.16
CCDC28A-201ENST00000332797 CADPSQ9ULU8 1353 aa28.56■■■□□ 2.16
CCDC28A-201ENST00000332797 ERCC6Q03468 1493 aa28.52■■■□□ 2.16
CCDC28A-201ENST00000332797 CFTRP13569 1480 aa28.43■■■□□ 2.14
CCDC28A-201ENST00000332797 PDS5BQ9NTI5 1447 aa28.42■■■□□ 2.14
CCDC28A-201ENST00000332797 KIF21AQ7Z4S6 1674 aa28.37■■■□□ 2.13
CCDC28A-201ENST00000332797 PRDM2Q13029 1718 aa28.27■■■□□ 2.12
CCDC28A-201ENST00000332797 FANCD2Q9BXW9 1451 aa28.26■■■□□ 2.11
CCDC28A-201ENST00000332797 THOC2Q8NI27 1593 aaKnown RBP28.21■■■□□ 2.11
CCDC28A-201ENST00000332797 CEP164Q9UPV0 1460 aa28.21■■■□□ 2.11
CCDC28A-201ENST00000332797 MRC2Q9UBG0 1479 aa28.13■■■□□ 2.09
CCDC28A-201ENST00000332797 CUX2O14529 1486 aa28.11■■■□□ 2.09
CCDC28A-201ENST00000332797 WDR62O43379 1518 aa28.03■■■□□ 2.08
CCDC28A-201ENST00000332797 URB2Q14146 1524 aaKnown RBP27.97■■■□□ 2.07
CCDC28A-201ENST00000332797 TOPBP1Q92547 1522 aa27.82■■■□□ 2.04
CCDC28A-201ENST00000332797 DNMBPQ6XZF7 1577 aa27.82■■■□□ 2.04
CCDC28A-201ENST00000332797 ABCC8Q09428 1581 aa27.8■■■□□ 2.04
CCDC28A-201ENST00000332797 CUX1P39880 1505 aa27.69■■■□□ 2.02
CCDC28A-201ENST00000332797 POLA1P09884 1462 aaPredicted RBP27.6■■■□□ 2.01
CCDC28A-201ENST00000332797 IFT140Q96RY7 1462 aa27.6■■■□□ 2.01
CCDC28A-201ENST00000332797 WRNQ14191 1432 aaPredicted RBP eCLIP27.57■■■□□ 2
CCDC28A-201ENST00000332797 FGD5Q6ZNL6 1462 aa27.57■■■□□ 2
CCDC28A-201ENST00000332797 SYNJ1O43426 1573 aa27.51■■■□□ 2
CCDC28A-201ENST00000332797 TARBP1Q13395 1621 aaKnown RBP27.51■■□□□ 1.99
CCDC28A-201ENST00000332797 TOP2BQ02880 1626 aa27.5■■□□□ 1.99
CCDC28A-201ENST00000332797 BIVM-ERCC5R4GMW8 1640 aa27.5■■□□□ 1.99
CCDC28A-201ENST00000332797 RAD54L2Q9Y4B4 1467 aa27.49■■□□□ 1.99
CCDC28A-201ENST00000332797 SOGA1O94964 1423 aa27.48■■□□□ 1.99
CCDC28A-201ENST00000332797 ZNF608Q9ULD9 1512 aaPredicted RBP27.47■■□□□ 1.99
CCDC28A-201ENST00000332797 EIF4G3O43432 1585 aaKnown RBP27.4■■□□□ 1.98
CCDC28A-201ENST00000332797 WDR97A6NE52 1622 aa27.35■■□□□ 1.97
CCDC28A-201ENST00000332797 AQRO60306 1485 aaKnown RBP eCLIP27.34■■□□□ 1.97
CCDC28A-201ENST00000332797 TDRD9Q8NDG6 1382 aaKnown RBP27.32■■□□□ 1.96
CCDC28A-201ENST00000332797 ABCA10Q8WWZ4 1543 aa27.3■■□□□ 1.96
CCDC28A-201ENST00000332797 ABCA5Q8WWZ7 1642 aa27.19■■□□□ 1.94
CCDC28A-201ENST00000332797 GAPVD1Q14C86 1478 aa27.18■■□□□ 1.94
CCDC28A-201ENST00000332797 GRIN2BQ13224 1484 aa27.15■■□□□ 1.94
CCDC28A-201ENST00000332797 PBRM1Q86U86 1689 aa27.14■■□□□ 1.94
CCDC28A-201ENST00000332797 SNAPC4Q5SXM2 1469 aa27.11■■□□□ 1.93
CCDC28A-201ENST00000332797 MAGI1Q96QZ7 1491 aaPredicted RBP27.05■■□□□ 1.92
CCDC28A-201ENST00000332797 TRIM41Q8WV44 630 aa27.04■■□□□ 1.92
CCDC28A-201ENST00000332797 CHD1O14646 1710 aa27.02■■□□□ 1.92
CCDC28A-201ENST00000332797 DNAJC5Q9H3Z4 198 aa27■■□□□ 1.91
CCDC28A-201ENST00000332797 FBLN2P98095 1184 aa27■■□□□ 1.91
CCDC28A-201ENST00000332797 KIF27Q86VH2 1401 aa26.98■■□□□ 1.91
CCDC28A-201ENST00000332797 ERICH3Q5RHP9 1530 aa26.97■■□□□ 1.91
CCDC28A-201ENST00000332797 OSCARQ8IYS5 282 aa26.96■■□□□ 1.91
CCDC28A-201ENST00000332797 SYNJ2O15056 1496 aa26.94■■□□□ 1.9
CCDC28A-201ENST00000332797 ADAMTS12P58397 1594 aa26.93■■□□□ 1.9
CCDC28A-201ENST00000332797 CHMP7Q8WUX9 453 aaPredicted RBP26.93■■□□□ 1.9
CCDC28A-201ENST00000332797 FHAD1B1AJZ9 1412 aa26.86■■□□□ 1.89
CCDC28A-201ENST00000332797 CHIC1Q5VXU3 224 aa26.82■■□□□ 1.88
CCDC28A-201ENST00000332797 IGF1RP08069 1367 aa26.82■■□□□ 1.88
CCDC28A-201ENST00000332797 GRIN2AQ12879 1464 aa26.8■■□□□ 1.88
CCDC28A-201ENST00000332797 RUSC2Q8N2Y8 1516 aa26.8■■□□□ 1.88
CCDC28A-201ENST00000332797 CUL7Q14999 1698 aa26.78■■□□□ 1.88
CCDC28A-201ENST00000332797 CLASP1Q7Z460 1538 aa26.7■■□□□ 1.87
CCDC28A-201ENST00000332797 CARMIL1Q5VZK9 1371 aa26.68■■□□□ 1.86
CCDC28A-201ENST00000332797 CEP170Q5SW79 1584 aa26.67■■□□□ 1.86
CCDC28A-201ENST00000332797 NUP160Q12769 1436 aa26.66■■□□□ 1.86
CCDC28A-201ENST00000332797 EEA1Q15075 1411 aa26.57■■□□□ 1.84
CCDC28A-201ENST00000332797 RIMBP3CA6NJZ7 1639 aa26.56■■□□□ 1.84
CCDC28A-201ENST00000332797 RIMBP3BA6NNM3 1639 aa26.56■■□□□ 1.84
CCDC28A-201ENST00000332797 RIMBP3Q9UFD9 1639 aa26.56■■□□□ 1.84
CCDC28A-201ENST00000332797 ARHGEF11O15085 1522 aa26.56■■□□□ 1.84
CCDC28A-201ENST00000332797 RAPGEF2Q9Y4G8 1499 aa26.56■■□□□ 1.84
CCDC28A-201ENST00000332797 FAM9AQ8IZU1 332 aaPredicted RBP26.51■■□□□ 1.83
Retrieved 100 of 20,778 RNA–protein pairs in 74.7 ms