RNA–Protein interactions for RNA: ENST00000477573.1

RTFDC1-207, Transcript of Protein RTF2 homolog, humanhuman

TSL 1 (best)

Gene RTFDC1, Length 2,193 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTFDC1-207ENST00000477573 NISCHQ9Y2I1 1504 aa26■■□□□ 1.75
RTFDC1-207ENST00000477573 CCDC180Q9P1Z9 1646 aa22.56■■□□□ 1.2
RTFDC1-207ENST00000477573 PELP1Q8IZL8 1130 aaKnown RBP22.53■■□□□ 1.2
RTFDC1-207ENST00000477573 MYT1Q01538 1121 aa22.16■■□□□ 1.14
RTFDC1-207ENST00000477573 ZCCHC6Q5VYS8 1495 aaKnown RBP21.88■■□□□ 1.09
RTFDC1-207ENST00000477573 DCAF1Q9Y4B6 1507 aa21.51■■□□□ 1.03
RTFDC1-207ENST00000477573 DCAF8L2P0C7V8 631 aa21.46■■□□□ 1.03
RTFDC1-207ENST00000477573 SHROOM4Q9ULL8 1493 aa21.38■■□□□ 1.01
RTFDC1-207ENST00000477573 TTBK1Q5TCY1 1321 aaPredicted RBP21.26■□□□□ 0.99
RTFDC1-207ENST00000477573 HRCP23327 699 aa21.21■□□□□ 0.99
RTFDC1-207ENST00000477573 MYO15BQ96JP2 1530 aa21.17■□□□□ 0.98
RTFDC1-207ENST00000477573 ABCC9O60706 1549 aa21.1■□□□□ 0.97
RTFDC1-207ENST00000477573 NACADO15069 1562 aa20.97■□□□□ 0.95
RTFDC1-207ENST00000477573 SCRIBQ14160 1630 aa20.77■□□□□ 0.92
RTFDC1-207ENST00000477573 SUPT5HO00267 1087 aaKnown RBP20.75■□□□□ 0.91
RTFDC1-207ENST00000477573 RB1CC1Q8TDY2 1594 aa20.74■□□□□ 0.91
RTFDC1-207ENST00000477573 SCAF1Q9H7N4 1312 aaKnown RBP20.54■□□□□ 0.88
RTFDC1-207ENST00000477573 PPARGC1BQ86YN6 1023 aaKnown RBP20.31■□□□□ 0.84
RTFDC1-207ENST00000477573 UNC13AQ9UPW8 1703 aa20.26■□□□□ 0.83
RTFDC1-207ENST00000477573 RSF1Q96T23 1441 aaPredicted RBP20.26■□□□□ 0.83
RTFDC1-207ENST00000477573 PRKCSHP14314 528 aaPredicted RBP20.19■□□□□ 0.82
RTFDC1-207ENST00000477573 CECR2Q9BXF3 1484 aa20.15■□□□□ 0.82
RTFDC1-207ENST00000477573 BAZ1AQ9NRL2 1556 aaPredicted RBP20.08■□□□□ 0.8
RTFDC1-207ENST00000477573 ERICH6Q7L0X2 663 aa20.07■□□□□ 0.8
RTFDC1-207ENST00000477573 MROH2BQ7Z745 1585 aa20.07■□□□□ 0.8
RTFDC1-207ENST00000477573 BCL11AQ9H165 835 aa20.05■□□□□ 0.8
RTFDC1-207ENST00000477573 BICRAQ9NZM4 1560 aa20.04■□□□□ 0.8
RTFDC1-207ENST00000477573 CHIC1Q5VXU3 224 aa19.97■□□□□ 0.79
RTFDC1-207ENST00000477573 PABPN1Q86U42 306 aaKnown RBP eCLIP19.95■□□□□ 0.783e-6■■■□□ 15.3
RTFDC1-207ENST00000477573 PCGF6Q9BYE7 350 aa19.94■□□□□ 0.78
RTFDC1-207ENST00000477573 SMARCA4P51532 1647 aa19.93■□□□□ 0.78
RTFDC1-207ENST00000477573 WIZO95785 1651 aa19.92■□□□□ 0.78
RTFDC1-207ENST00000477573 APLP2Q06481 763 aa19.88■□□□□ 0.77
RTFDC1-207ENST00000477573 CENPBP07199 599 aaPredicted RBP19.86■□□□□ 0.77
RTFDC1-207ENST00000477573 ACIN1Q9UKV3 1341 aaKnown RBP19.83■□□□□ 0.76
RTFDC1-207ENST00000477573 FAM9AQ8IZU1 332 aaPredicted RBP19.76■□□□□ 0.75
RTFDC1-207ENST00000477573 TOP2AP11388 1531 aaKnown RBP19.75■□□□□ 0.75
RTFDC1-207ENST00000477573 ZEB1P37275 1124 aaPredicted RBP19.74■□□□□ 0.75
RTFDC1-207ENST00000477573 PEG3Q9GZU2 1588 aa19.67■□□□□ 0.74
RTFDC1-207ENST00000477573 GTF3C3Q9Y5Q9 886 aa19.59■□□□□ 0.73
RTFDC1-207ENST00000477573 SMARCA2P51531 1590 aa19.58■□□□□ 0.72
RTFDC1-207ENST00000477573 NEUROD1Q13562 356 aa19.55■□□□□ 0.72
RTFDC1-207ENST00000477573 CCDC88BA6NC98 1476 aa19.54■□□□□ 0.72
RTFDC1-207ENST00000477573 ATAD2BQ9ULI0 1458 aa19.54■□□□□ 0.72
RTFDC1-207ENST00000477573 TRIM41Q8WV44 630 aa19.51■□□□□ 0.71
RTFDC1-207ENST00000477573 BAZ1BQ9UIG0 1483 aaKnown RBP19.47■□□□□ 0.71
RTFDC1-207ENST00000477573 EIF4G1Q04637 1599 aaKnown RBP19.46■□□□□ 0.71
RTFDC1-207ENST00000477573 ANP32EQ9BTT0 268 aa19.39■□□□□ 0.69
RTFDC1-207ENST00000477573 NCAPD3P42695 1498 aa19.34■□□□□ 0.69
RTFDC1-207ENST00000477573 HMGXB3Q12766 1538 aa19.34■□□□□ 0.69
RTFDC1-207ENST00000477573 TRIM26Q12899 539 aaPredicted RBP19.29■□□□□ 0.68
RTFDC1-207ENST00000477573 ABCC8Q09428 1581 aa19.2■□□□□ 0.66
RTFDC1-207ENST00000477573 LOC105371045A0A1W2PR82 267 aa19.2■□□□□ 0.66
RTFDC1-207ENST00000477573 SLC24A1O60721 1099 aa19.19■□□□□ 0.66
RTFDC1-207ENST00000477573 CC2D2AQ9P2K1 1620 aa19.1■□□□□ 0.65
RTFDC1-207ENST00000477573 WRNQ14191 1432 aaPredicted RBP eCLIP19.09■□□□□ 0.65
RTFDC1-207ENST00000477573 CSRNP3Q8WYN3 585 aa19.03■□□□□ 0.64
RTFDC1-207ENST00000477573 EEA1Q15075 1411 aa18.99■□□□□ 0.63
RTFDC1-207ENST00000477573 CFTRP13569 1480 aa18.98■□□□□ 0.63
RTFDC1-207ENST00000477573 SYNJ1O43426 1573 aa18.96■□□□□ 0.63
RTFDC1-207ENST00000477573 PRDM2Q13029 1718 aa18.9■□□□□ 0.62
RTFDC1-207ENST00000477573 SOGA1O94964 1423 aa18.9■□□□□ 0.62
RTFDC1-207ENST00000477573 TOP2BQ02880 1626 aa18.89■□□□□ 0.61
RTFDC1-207ENST00000477573 CADPSQ9ULU8 1353 aa18.88■□□□□ 0.61
RTFDC1-207ENST00000477573 BIVM-ERCC5R4GMW8 1640 aa18.86■□□□□ 0.61
RTFDC1-207ENST00000477573 CLSPNQ9HAW4 1339 aa18.85■□□□□ 0.61
RTFDC1-207ENST00000477573 EHMT2Q96KQ7 1210 aa18.83■□□□□ 0.61
RTFDC1-207ENST00000477573 DIEXFQ68CQ4 756 aaKnown RBP18.81■□□□□ 0.6
RTFDC1-207ENST00000477573 RUSC2Q8N2Y8 1516 aa18.79■□□□□ 0.6
RTFDC1-207ENST00000477573 CUX1P39880 1505 aa18.76■□□□□ 0.59
RTFDC1-207ENST00000477573 DAXXQ9UER7 740 aaPredicted RBP18.75■□□□□ 0.59
RTFDC1-207ENST00000477573 GOLGA3Q08378 1498 aa18.72■□□□□ 0.59
RTFDC1-207ENST00000477573 TNIKQ9UKE5 1360 aa18.7■□□□□ 0.58
RTFDC1-207ENST00000477573 CEP164Q9UPV0 1460 aa18.7■□□□□ 0.58
RTFDC1-207ENST00000477573 UBE2Q2Q8WVN8 375 aa18.69■□□□□ 0.58
RTFDC1-207ENST00000477573 KIF21BO75037 1637 aa18.68■□□□□ 0.58
RTFDC1-207ENST00000477573 TSHZ2Q9NRE2 1034 aa18.67■□□□□ 0.58
RTFDC1-207ENST00000477573 FANCD2Q9BXW9 1451 aa18.66■□□□□ 0.58
RTFDC1-207ENST00000477573 UBTFP17480 764 aaKnown RBP18.66■□□□□ 0.58
RTFDC1-207ENST00000477573 LAMC3Q9Y6N6 1575 aa18.65■□□□□ 0.58
RTFDC1-207ENST00000477573 EIF5BO60841 1220 aaKnown RBP18.64■□□□□ 0.57
RTFDC1-207ENST00000477573 CEP162Q5TB80 1403 aa18.61■□□□□ 0.57
RTFDC1-207ENST00000477573 KIF27Q86VH2 1401 aa18.61■□□□□ 0.57
RTFDC1-207ENST00000477573 NESP48681 1621 aa18.58■□□□□ 0.56
RTFDC1-207ENST00000477573 MYT1LQ9UL68 1186 aa18.56■□□□□ 0.56
RTFDC1-207ENST00000477573 DNMBPQ6XZF7 1577 aa18.54■□□□□ 0.56
RTFDC1-207ENST00000477573 ANO8Q9HCE9 1232 aaPredicted RBP18.54■□□□□ 0.56
RTFDC1-207ENST00000477573 PDS5BQ9NTI5 1447 aa18.54■□□□□ 0.56
RTFDC1-207ENST00000477573 FGD5Q6ZNL6 1462 aa18.53■□□□□ 0.56
RTFDC1-207ENST00000477573 ERICH3Q5RHP9 1530 aa18.53■□□□□ 0.56
RTFDC1-207ENST00000477573 RAPGEF2Q9Y4G8 1499 aa18.52■□□□□ 0.55
RTFDC1-207ENST00000477573 PRXQ9BXM0 1461 aa18.51■□□□□ 0.55
RTFDC1-207ENST00000477573 CUX2O14529 1486 aa18.48■□□□□ 0.55
RTFDC1-207ENST00000477573 TOPBP1Q92547 1522 aa18.48■□□□□ 0.55
RTFDC1-207ENST00000477573 ERICH6BQ5W0A0 696 aa18.47■□□□□ 0.55
RTFDC1-207ENST00000477573 DNAJC5BQ9UF47 199 aa18.47■□□□□ 0.55
RTFDC1-207ENST00000477573 SUPT16HQ9Y5B9 1047 aaKnown RBP18.45■□□□□ 0.54
RTFDC1-207ENST00000477573 CLIP1P30622 1438 aa18.43■□□□□ 0.54
RTFDC1-207ENST00000477573 POLA1P09884 1462 aaPredicted RBP18.41■□□□□ 0.54
RTFDC1-207ENST00000477573 URB2Q14146 1524 aaKnown RBP18.38■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 81.3 ms