RNA–Protein interactions for RNA: ENST00000611852.4

CCDC28A-202, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,505 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-202ENST00000611852 NISCHQ9Y2I1 1504 aa39.88■■■■□ 3.97
CCDC28A-202ENST00000611852 CCDC180Q9P1Z9 1646 aa35.34■■■■□ 3.25
CCDC28A-202ENST00000611852 ABCC9O60706 1549 aa34.41■■■■□ 3.1
CCDC28A-202ENST00000611852 ZCCHC6Q5VYS8 1495 aaKnown RBP33.27■■■□□ 2.92
CCDC28A-202ENST00000611852 DCAF8L2P0C7V8 631 aa33.23■■■□□ 2.91
CCDC28A-202ENST00000611852 NACADO15069 1562 aa33.19■■■□□ 2.9
CCDC28A-202ENST00000611852 RB1CC1Q8TDY2 1594 aa33.17■■■□□ 2.9
CCDC28A-202ENST00000611852 MYO15BQ96JP2 1530 aa33.07■■■□□ 2.88
CCDC28A-202ENST00000611852 DCAF1Q9Y4B6 1507 aa33.01■■■□□ 2.87
CCDC28A-202ENST00000611852 UNC13AQ9UPW8 1703 aa32.44■■■□□ 2.78
CCDC28A-202ENST00000611852 SCRIBQ14160 1630 aa32.27■■■□□ 2.76
CCDC28A-202ENST00000611852 BICRAQ9NZM4 1560 aa32.19■■■□□ 2.74
CCDC28A-202ENST00000611852 PABPN1Q86U42 306 aaKnown RBP eCLIP32.19■■■□□ 2.74
CCDC28A-202ENST00000611852 SHROOM4Q9ULL8 1493 aa31.84■■■□□ 2.69
CCDC28A-202ENST00000611852 DNAJC5BQ9UF47 199 aa31.42■■■□□ 2.62
CCDC28A-202ENST00000611852 EIF4G1Q04637 1599 aaKnown RBP31.31■■■□□ 2.6
CCDC28A-202ENST00000611852 CC2D2AQ9P2K1 1620 aa31.13■■■□□ 2.57
CCDC28A-202ENST00000611852 CECR2Q9BXF3 1484 aa31.05■■■□□ 2.56
CCDC28A-202ENST00000611852 SMARCA4P51532 1647 aa30.9■■■□□ 2.54
CCDC28A-202ENST00000611852 BAZ1AQ9NRL2 1556 aaPredicted RBP30.89■■■□□ 2.54
CCDC28A-202ENST00000611852 MROH2BQ7Z745 1585 aa30.75■■■□□ 2.51
CCDC28A-202ENST00000611852 ATAD2BQ9ULI0 1458 aa30.69■■■□□ 2.5
CCDC28A-202ENST00000611852 SMARCA2P51531 1590 aa30.65■■■□□ 2.5
CCDC28A-202ENST00000611852 NCAPD3P42695 1498 aa30.64■■■□□ 2.5
CCDC28A-202ENST00000611852 PEG3Q9GZU2 1588 aa30.6■■■□□ 2.49
CCDC28A-202ENST00000611852 HMGXB3Q12766 1538 aa30.5■■■□□ 2.47
CCDC28A-202ENST00000611852 RSF1Q96T23 1441 aaPredicted RBP30.47■■■□□ 2.47
CCDC28A-202ENST00000611852 BAZ1BQ9UIG0 1483 aaKnown RBP30.43■■■□□ 2.46
CCDC28A-202ENST00000611852 WIZO95785 1651 aa30.42■■■□□ 2.46
CCDC28A-202ENST00000611852 TOP2AP11388 1531 aaKnown RBP30.1■■■□□ 2.41
CCDC28A-202ENST00000611852 NESP48681 1621 aa29.85■■■□□ 2.37
CCDC28A-202ENST00000611852 SUPT5HO00267 1087 aaKnown RBP29.84■■■□□ 2.37
CCDC28A-202ENST00000611852 LAMC3Q9Y6N6 1575 aa29.78■■■□□ 2.36
CCDC28A-202ENST00000611852 CADPSQ9ULU8 1353 aa29.75■■■□□ 2.35
CCDC28A-202ENST00000611852 CCDC88BA6NC98 1476 aa29.75■■■□□ 2.35
CCDC28A-202ENST00000611852 CFTRP13569 1480 aa29.62■■■□□ 2.33
CCDC28A-202ENST00000611852 ERCC6Q03468 1493 aa29.62■■■□□ 2.33
CCDC28A-202ENST00000611852 PDS5BQ9NTI5 1447 aa29.58■■■□□ 2.33
CCDC28A-202ENST00000611852 KIF21AQ7Z4S6 1674 aa29.48■■■□□ 2.31
CCDC28A-202ENST00000611852 FANCD2Q9BXW9 1451 aa29.41■■■□□ 2.3
CCDC28A-202ENST00000611852 PRDM2Q13029 1718 aa29.39■■■□□ 2.3
CCDC28A-202ENST00000611852 CEP164Q9UPV0 1460 aa29.34■■■□□ 2.29
CCDC28A-202ENST00000611852 THOC2Q8NI27 1593 aaKnown RBP29.34■■■□□ 2.29
CCDC28A-202ENST00000611852 MRC2Q9UBG0 1479 aa29.26■■■□□ 2.27
CCDC28A-202ENST00000611852 CUX2O14529 1486 aa29.24■■■□□ 2.27
CCDC28A-202ENST00000611852 WDR62O43379 1518 aa29.17■■■□□ 2.26
CCDC28A-202ENST00000611852 URB2Q14146 1524 aaKnown RBP29.11■■■□□ 2.25
CCDC28A-202ENST00000611852 TOPBP1Q92547 1522 aa28.97■■■□□ 2.23
CCDC28A-202ENST00000611852 ABCC8Q09428 1581 aa28.95■■■□□ 2.23
CCDC28A-202ENST00000611852 DNMBPQ6XZF7 1577 aa28.94■■■□□ 2.22
CCDC28A-202ENST00000611852 CUX1P39880 1505 aa28.83■■■□□ 2.21
CCDC28A-202ENST00000611852 POLA1P09884 1462 aaPredicted RBP28.73■■■□□ 2.19
CCDC28A-202ENST00000611852 IFT140Q96RY7 1462 aa28.72■■■□□ 2.19
CCDC28A-202ENST00000611852 WRNQ14191 1432 aaPredicted RBP eCLIP28.72■■■□□ 2.19
CCDC28A-202ENST00000611852 FGD5Q6ZNL6 1462 aa28.69■■■□□ 2.18
CCDC28A-202ENST00000611852 SYNJ1O43426 1573 aa28.64■■■□□ 2.17
CCDC28A-202ENST00000611852 TARBP1Q13395 1621 aaKnown RBP28.63■■■□□ 2.17
CCDC28A-202ENST00000611852 TOP2BQ02880 1626 aa28.63■■■□□ 2.17
CCDC28A-202ENST00000611852 BIVM-ERCC5R4GMW8 1640 aa28.62■■■□□ 2.17
CCDC28A-202ENST00000611852 SOGA1O94964 1423 aa28.61■■■□□ 2.17
CCDC28A-202ENST00000611852 RAD54L2Q9Y4B4 1467 aa28.61■■■□□ 2.17
CCDC28A-202ENST00000611852 ZNF608Q9ULD9 1512 aaPredicted RBP28.59■■■□□ 2.17
CCDC28A-202ENST00000611852 EIF4G3O43432 1585 aaKnown RBP28.47■■■□□ 2.15
CCDC28A-202ENST00000611852 AQRO60306 1485 aaKnown RBP eCLIP28.45■■■□□ 2.15
CCDC28A-202ENST00000611852 TDRD9Q8NDG6 1382 aaKnown RBP28.44■■■□□ 2.14
CCDC28A-202ENST00000611852 WDR97A6NE52 1622 aa28.44■■■□□ 2.14
CCDC28A-202ENST00000611852 ABCA10Q8WWZ4 1543 aa28.43■■■□□ 2.14
CCDC28A-202ENST00000611852 ABCA5Q8WWZ7 1642 aa28.29■■■□□ 2.12
CCDC28A-202ENST00000611852 GAPVD1Q14C86 1478 aa28.29■■■□□ 2.12
CCDC28A-202ENST00000611852 GRIN2BQ13224 1484 aa28.25■■■□□ 2.11
CCDC28A-202ENST00000611852 PBRM1Q86U86 1689 aa28.21■■■□□ 2.11
CCDC28A-202ENST00000611852 SNAPC4Q5SXM2 1469 aa28.19■■■□□ 2.1
CCDC28A-202ENST00000611852 TRIM41Q8WV44 630 aa28.18■■■□□ 2.1
CCDC28A-202ENST00000611852 MAGI1Q96QZ7 1491 aaPredicted RBP28.16■■■□□ 2.1
CCDC28A-202ENST00000611852 DNAJC5Q9H3Z4 198 aa28.13■■■□□ 2.09
CCDC28A-202ENST00000611852 KIF27Q86VH2 1401 aa28.1■■■□□ 2.09
CCDC28A-202ENST00000611852 ERICH3Q5RHP9 1530 aa28.08■■■□□ 2.09
CCDC28A-202ENST00000611852 OSCARQ8IYS5 282 aa28.08■■■□□ 2.08
CCDC28A-202ENST00000611852 CHD1O14646 1710 aa28.07■■■□□ 2.08
CCDC28A-202ENST00000611852 FBLN2P98095 1184 aa28.06■■■□□ 2.08
CCDC28A-202ENST00000611852 SYNJ2O15056 1496 aa28.05■■■□□ 2.08
CCDC28A-202ENST00000611852 CHMP7Q8WUX9 453 aaPredicted RBP28.02■■■□□ 2.08
CCDC28A-202ENST00000611852 ADAMTS12P58397 1594 aa28■■■□□ 2.07
CCDC28A-202ENST00000611852 CHIC1Q5VXU3 224 aa27.98■■■□□ 2.07
CCDC28A-202ENST00000611852 IGF1RP08069 1367 aa27.97■■■□□ 2.07
CCDC28A-202ENST00000611852 FHAD1B1AJZ9 1412 aa27.96■■■□□ 2.07
CCDC28A-202ENST00000611852 RUSC2Q8N2Y8 1516 aa27.93■■■□□ 2.06
CCDC28A-202ENST00000611852 GRIN2AQ12879 1464 aa27.9■■■□□ 2.06
CCDC28A-202ENST00000611852 CUL7Q14999 1698 aa27.86■■■□□ 2.05
CCDC28A-202ENST00000611852 CARMIL1Q5VZK9 1371 aa27.79■■■□□ 2.04
CCDC28A-202ENST00000611852 CLASP1Q7Z460 1538 aa27.79■■■□□ 2.04
CCDC28A-202ENST00000611852 NUP160Q12769 1436 aa27.77■■■□□ 2.04
CCDC28A-202ENST00000611852 CEP170Q5SW79 1584 aa27.75■■■□□ 2.03
CCDC28A-202ENST00000611852 EEA1Q15075 1411 aa27.68■■■□□ 2.02
CCDC28A-202ENST00000611852 RAPGEF2Q9Y4G8 1499 aa27.66■■■□□ 2.02
CCDC28A-202ENST00000611852 CSRNP3Q8WYN3 585 aa27.63■■■□□ 2.01
CCDC28A-202ENST00000611852 ARHGEF11O15085 1522 aa27.62■■■□□ 2.01
CCDC28A-202ENST00000611852 PRXQ9BXM0 1461 aa27.61■■■□□ 2.01
CCDC28A-202ENST00000611852 RIMBP3CA6NJZ7 1639 aa27.6■■■□□ 2.01
CCDC28A-202ENST00000611852 RIMBP3BA6NNM3 1639 aa27.6■■■□□ 2.01
Retrieved 100 of 20,778 RNA–protein pairs in 152.9 ms