Protein–RNA interactions for Protein: P53999

SUB1, Activated RNA polymerase II transcriptional coactivator p15, humanhuman

Known RBP eCLIP

Length 127 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SUB1P53999 TYK2-205ENST00000525621 4347 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.554e-7■■■■□ 26
SUB1P53999 TMEM123-201ENST00000361236 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC11.12□□□□□ -0.634e-10■■■■□ 26
SUB1P53999 TMEM123-202ENST00000398136 3579 ntAPPRIS P2 TSL 1 (best) BASIC10.93□□□□□ -0.664e-10■■■■□ 26
SUB1P53999 TYK2-201ENST00000264818 3971 ntAPPRIS P1 TSL 1 (best) BASIC9.6□□□□□ -0.874e-7■■■■□ 26
SUB1P53999 TYK2-214ENST00000530220 767 ntTSL 39.58□□□□□ -0.884e-7■■■■□ 26
SUB1P53999 TYK2-207ENST00000525976 495 ntTSL 39.56□□□□□ -0.884e-7■■■■□ 26
SUB1P53999 TYK2-202ENST00000524462 3456 ntTSL 1 (best) BASIC9.54□□□□□ -0.884e-7■■■■□ 26
SUB1P53999 SUPT6H-202ENST00000347486 5569 ntAPPRIS P1 TSL 1 (best) BASIC8.6□□□□□ -1.034e-10■■■■□ 26
SUB1P53999 PDCD10-208ENST00000473645 1360 ntAPPRIS P1 TSL 1 (best) BASIC7.17□□□□□ -1.261e-6■■■■□ 26
SUB1P53999 PDCD10-218ENST00000497056 1276 ntAPPRIS P1 TSL 1 (best) BASIC6.57□□□□□ -1.361e-6■■■■□ 26
SUB1P53999 STEAP1B-204ENST00000439708 797 ntTSL 33.75□□□□□ -1.814e-7■■■■□ 26
SUB1P53999 PDCD10-216ENST00000492396 814 ntTSL 5 BASIC3.4□□□□□ -1.871e-6■■■■□ 26
SUB1P53999 UBC-213ENST00000546120 718 ntTSL 5 BASIC8.39□□□□□ -1.072e-7■■■■□ 25.9
SUB1P53999 PTGES3-202ENST00000414274 1547 ntTSL 2 BASIC12.16□□□□□ -0.465e-8■■■■□ 25.9
SUB1P53999 EI24-212ENST00000615917 1407 ntTSL 2 BASIC20.1■□□□□ 0.811e-6■■■■□ 25.9
SUB1P53999 EI24-211ENST00000534546 1544 ntTSL 2 BASIC17.08■□□□□ 0.321e-6■■■■□ 25.9
SUB1P53999 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.171e-7■■■■□ 25.9
SUB1P53999 UBC-206ENST00000538617 1303 ntTSL 5 BASIC13.79□□□□□ -0.21e-7■■■■□ 25.9
SUB1P53999 UBC-205ENST00000536769 3745 ntAPPRIS P1 BASIC12.4□□□□□ -0.421e-7■■■■□ 25.9
SUB1P53999 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC12.65□□□□□ -0.383e-11■■■■□ 25.8
SUB1P53999 PLEKHJ1-201ENST00000326631 1206 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.732e-8■■■■□ 25.8
SUB1P53999 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC17.28■□□□□ 0.362e-8■■■■□ 25.8
SUB1P53999 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC16.48■□□□□ 0.232e-8■■■■□ 25.8
SUB1P53999 PLEKHJ1-205ENST00000587394 937 ntTSL 2 BASIC15.29■□□□□ 0.042e-8■■■■□ 25.8
SUB1P53999 PLEKHJ1-208ENST00000588450 2858 ntTSL 214.39□□□□□ -0.112e-8■■■■□ 25.8
SUB1P53999 PLEKHJ1-212ENST00000589791 1329 ntTSL 213.88□□□□□ -0.192e-8■■■■□ 25.8
SUB1P53999 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC13.67□□□□□ -0.222e-8■■■■□ 25.8
SUB1P53999 USP14-202ENST00000383589 2168 ntTSL 5 BASIC9.23□□□□□ -0.932e-7■■■■□ 25.7
SUB1P53999 USP14-205ENST00000578942 3189 ntTSL 28.49□□□□□ -1.052e-7■■■■□ 25.7
SUB1P53999 USP14-201ENST00000261601 4921 ntAPPRIS P1 TSL 1 (best) BASIC7.19□□□□□ -1.262e-7■■■■□ 25.7
SUB1P53999 HGS-203ENST00000570652 523 ntTSL 515.76■□□□□ 0.112e-7■■■■□ 25.7
SUB1P53999 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.222e-7■■■■□ 25.7
SUB1P53999 HGS-210ENST00000573320 547 ntTSL 311.52□□□□□ -0.572e-7■■■■□ 25.7
SUB1P53999 HGS-211ENST00000573949 461 ntTSL 510.18□□□□□ -0.782e-7■■■■□ 25.7
SUB1P53999 PRPF8-203ENST00000571958 380 ntTSL 37.21□□□□□ -1.263e-34■■■■□ 25.7
SUB1P53999 RPS3-208ENST00000527273 390 ntTSL 38.48□□□□□ -1.054e-33■■■■□ 25.7
SUB1P53999 RPS3-211ENST00000528847 639 ntTSL 56.97□□□□□ -1.294e-33■■■■□ 25.7
SUB1P53999 SSR3-206ENST00000476217 807 ntTSL 3 BASIC4□□□□□ -1.772e-10■■■■□ 25.7
SUB1P53999 SSR3-207ENST00000478842 612 ntTSL 33.84□□□□□ -1.792e-10■■■■□ 25.7
SUB1P53999 SSR3-209ENST00000498205 593 ntTSL 23.47□□□□□ -1.852e-10■■■■□ 25.7
SUB1P53999 NEK9-201ENST00000238616 8310 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.453e-6■■■■□ 25.6
SUB1P53999 NEK9-210ENST00000557026 5177 ntTSL 211.12□□□□□ -0.633e-6■■■■□ 25.6
SUB1P53999 NEK9-205ENST00000555405 3357 ntTSL 1 (best)8.07□□□□□ -1.123e-6■■■■□ 25.6
SUB1P53999 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC15.43■□□□□ 0.061e-6■■■■□ 25.6
SUB1P53999 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC13.46□□□□□ -0.261e-6■■■■□ 25.6
SUB1P53999 BMS1-201ENST00000374518 7753 ntAPPRIS P1 TSL 1 (best) BASIC6.86□□□□□ -1.315e-7■■■■□ 25.5
SUB1P53999 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.191e-6■■■■□ 25.5
SUB1P53999 NMD3-206ENST00000472947 2378 ntTSL 1 (best) BASIC8.72□□□□□ -1.011e-6■■■■□ 25.5
SUB1P53999 NMD3-201ENST00000351193 3049 ntAPPRIS P1 TSL 1 (best) BASIC6.6□□□□□ -1.351e-6■■■■□ 25.5
SUB1P53999 RPS21-203ENST00000370592 401 ntTSL 29.17□□□□□ -0.943e-15■■■■□ 25.5
SUB1P53999 CCT6A-202ENST00000335503 2529 ntTSL 5 BASIC13.32□□□□□ -0.283e-7■■■■□ 25.5
SUB1P53999 CCT6A-201ENST00000275603 2719 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.323e-7■■■■□ 25.5
SUB1P53999 TIMM23-201ENST00000580018 1222 ntAPPRIS P1 TSL 1 (best) BASIC9.62□□□□□ -0.872e-12■■■■□ 25.5
SUB1P53999 LDHB-204ENST00000450584 732 ntTSL 37.91□□□□□ -1.143e-9■■■■□ 25.5
SUB1P53999 CHPT1-203ENST00000546873 624 ntTSL 35.6□□□□□ -1.512e-6■■■■□ 25.4
SUB1P53999 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.266e-10■■■■□ 25.4
SUB1P53999 VDAC1-201ENST00000265333 1953 ntAPPRIS P1 TSL 2 BASIC11.53□□□□□ -0.566e-10■■■■□ 25.4
SUB1P53999 VDAC1-202ENST00000395044 1807 ntAPPRIS P1 TSL 1 (best) BASIC9.61□□□□□ -0.876e-10■■■■□ 25.4
SUB1P53999 PSMD13-212ENST00000532097 1991 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.342e-7■■■■□ 25.4
SUB1P53999 PSMD13-202ENST00000382671 1489 ntTSL 1 (best)11.99□□□□□ -0.492e-7■■■■□ 25.4
SUB1P53999 PSMD13-204ENST00000525665 1632 ntTSL 511.94□□□□□ -0.52e-7■■■■□ 25.4
SUB1P53999 PSMD13-215ENST00000621534 1572 ntTSL 5 BASIC11.89□□□□□ -0.512e-7■■■■□ 25.4
SUB1P53999 PSMD13-203ENST00000431206 1591 ntTSL 2 BASIC11.83□□□□□ -0.522e-7■■■■□ 25.4
SUB1P53999 PSMD13-201ENST00000352303 1427 ntTSL 5 BASIC9.23□□□□□ -0.932e-7■■■■□ 25.4
SUB1P53999 PSMD13-207ENST00000527982 2200 nt9.19□□□□□ -0.942e-7■■■■□ 25.4
SUB1P53999 RUVBL1-205ENST00000478892 872 ntTSL 38.96□□□□□ -0.986e-11■■■■□ 25.4
SUB1P53999 SNHG5-208ENST00000433843 388 ntTSL 21.38□□□□□ -2.193e-12■■■■□ 25.4
SUB1P53999 FKBP4-201ENST00000001008 3732 ntAPPRIS P1 TSL 1 (best) BASIC9.93□□□□□ -0.822e-8■■■■□ 25.4
SUB1P53999 FKBP4-207ENST00000544366 287 ntTSL 32.66□□□□□ -1.982e-8■■■■□ 25.4
SUB1P53999 DSTN-203ENST00000474024 1853 ntTSL 1 (best) BASIC11.15□□□□□ -0.637e-7■■■■□ 25.4
SUB1P53999 DSTN-201ENST00000246069 3617 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.657e-7■■■■□ 25.4
SUB1P53999 GRSF1-202ENST00000499044 2491 ntTSL 213.92□□□□□ -0.183e-9■■■■□ 25.4
SUB1P53999 GRSF1-201ENST00000254799 6666 ntAPPRIS P1 TSL 5 BASIC13.04□□□□□ -0.323e-9■■■■□ 25.4
SUB1P53999 GRSF1-208ENST00000545193 2682 ntTSL 2 BASIC12.52□□□□□ -0.413e-9■■■■□ 25.4
SUB1P53999 GRSF1-204ENST00000505068 3561 ntTSL 210.8□□□□□ -0.683e-9■■■■□ 25.4
SUB1P53999 GRSF1-207ENST00000514161 1765 ntTSL 28.25□□□□□ -1.093e-9■■■■□ 25.4
SUB1P53999 GRSF1-206ENST00000508091 419 ntTSL 37.76□□□□□ -1.173e-9■■■■□ 25.4
SUB1P53999 GRSF1-203ENST00000502323 1794 ntTSL 5 BASIC7.36□□□□□ -1.233e-9■■■■□ 25.4
SUB1P53999 GRSF1-205ENST00000506453 925 ntTSL 36.02□□□□□ -1.453e-9■■■■□ 25.4
SUB1P53999 VARS2-212ENST00000542001 4064 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.234e-6■■■■□ 25.4
SUB1P53999 VARS2-201ENST00000321897 4073 ntTSL 1 (best) BASIC12.73□□□□□ -0.374e-6■■■■□ 25.4
SUB1P53999 VARS2-211ENST00000541562 3566 ntTSL 2 BASIC12□□□□□ -0.494e-6■■■■□ 25.4
SUB1P53999 VARS2-213ENST00000625423 3362 ntTSL 2 BASIC9.08□□□□□ -0.964e-6■■■■□ 25.4
SUB1P53999 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC16.12■□□□□ 0.178e-7■■■■□ 25.4
SUB1P53999 ATXN2-201ENST00000377617 4702 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.038e-7■■■■□ 25.4
SUB1P53999 ATXN2-219ENST00000550104 4648 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.128e-7■■■■□ 25.4
SUB1P53999 SFXN1-201ENST00000321442 4231 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.161e-6■■■■□ 25.4
SUB1P53999 ATXN2-204ENST00000392645 2842 ntTSL 211.44□□□□□ -0.588e-7■■■■□ 25.4
SUB1P53999 ATXN2-226ENST00000608853 4376 ntAPPRIS ALT2 TSL 1 (best) BASIC10.86□□□□□ -0.678e-7■■■■□ 25.4
SUB1P53999 ATXN2-218ENST00000549455 568 ntTSL 410.51□□□□□ -0.738e-7■■■■□ 25.4
SUB1P53999 ATXN2-210ENST00000483311 4159 ntTSL 1 (best)9.94□□□□□ -0.828e-7■■■■□ 25.4
SUB1P53999 ATXN2-214ENST00000535949 3205 ntAPPRIS ALT2 TSL 1 (best) BASIC5.83□□□□□ -1.488e-7■■■■□ 25.4
SUB1P53999 ATXN2-215ENST00000542287 3443 ntAPPRIS ALT2 TSL 1 (best) BASIC4.59□□□□□ -1.688e-7■■■■□ 25.4
SUB1P53999 ATXN2-202ENST00000389153 3854 ntAPPRIS ALT2 TSL 5 BASIC4.48□□□□□ -1.698e-7■■■■□ 25.4
SUB1P53999 ATXN2-217ENST00000548492 556 ntTSL 43.03□□□□□ -1.928e-7■■■■□ 25.4
SUB1P53999 CAP1-205ENST00000372802 2964 ntAPPRIS ALT1 TSL 5 BASIC12.59□□□□□ -0.392e-6■■■■□ 25.3
SUB1P53999 PDCD6IP-206ENST00000457054 5962 ntAPPRIS ALT1 TSL 1 (best) BASIC10.52□□□□□ -0.731e-7■■■■□ 25.3
SUB1P53999 PDCD6IP-201ENST00000307296 6161 ntAPPRIS P3 TSL 1 (best) BASIC8.21□□□□□ -1.091e-7■■■■□ 25.3
SUB1P53999 RPS3-206ENST00000526248 771 ntTSL 511.74□□□□□ -0.533e-33■■■■□ 25.3
SUB1P53999 RPS3-201ENST00000278572 907 ntTSL 3 BASIC10.96□□□□□ -0.653e-33■■■■□ 25.3
Retrieved 100 of 11,644 protein–RNA pairs in 124.6 ms