RNA–Protein interactions for RNA: ENST00000445593.6

LAPTM4B-201, Transcript of lysosomal protein transmembrane 4 beta, humanhuman

TSL 1 (best) BASIC

Gene LAPTM4B, Length 3,173 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LAPTM4B-201ENST00000445593 NISCHQ9Y2I1 1504 aa35.82■■■■□ 3.33
LAPTM4B-201ENST00000445593 SHROOM4Q9ULL8 1493 aa30.7■■■□□ 2.51
LAPTM4B-201ENST00000445593 DCAF8L2P0C7V8 631 aa30.51■■■□□ 2.47
LAPTM4B-201ENST00000445593 CCDC180Q9P1Z9 1646 aa30.48■■■□□ 2.47
LAPTM4B-201ENST00000445593 ZCCHC6Q5VYS8 1495 aaKnown RBP30.16■■■□□ 2.42
LAPTM4B-201ENST00000445593 SUPT5HO00267 1087 aaKnown RBP29.87■■■□□ 2.37
LAPTM4B-201ENST00000445593 ABCC9O60706 1549 aa29.2■■■□□ 2.26
LAPTM4B-201ENST00000445593 DCAF1Q9Y4B6 1507 aa29.15■■■□□ 2.26
LAPTM4B-201ENST00000445593 SCRIBQ14160 1630 aa28.87■■■□□ 2.21
LAPTM4B-201ENST00000445593 CHIC1Q5VXU3 224 aa28.52■■■□□ 2.16
LAPTM4B-201ENST00000445593 MYO15BQ96JP2 1530 aa28.45■■■□□ 2.15
LAPTM4B-201ENST00000445593 NACADO15069 1562 aa28.41■■■□□ 2.14
LAPTM4B-201ENST00000445593 RSF1Q96T23 1441 aaPredicted RBP28.24■■■□□ 2.11
LAPTM4B-201ENST00000445593 CECR2Q9BXF3 1484 aa28.16■■■□□ 2.1
LAPTM4B-201ENST00000445593 RB1CC1Q8TDY2 1594 aa28.13■■■□□ 2.09
LAPTM4B-201ENST00000445593 PABPN1Q86U42 306 aaKnown RBP eCLIP27.96■■■□□ 2.07
LAPTM4B-201ENST00000445593 MROH2BQ7Z745 1585 aa27.93■■■□□ 2.06
LAPTM4B-201ENST00000445593 LOC105371045A0A1W2PR82 267 aa27.85■■■□□ 2.05
LAPTM4B-201ENST00000445593 WIZO95785 1651 aa27.75■■■□□ 2.03
LAPTM4B-201ENST00000445593 FAM9AQ8IZU1 332 aaPredicted RBP27.71■■■□□ 2.03
LAPTM4B-201ENST00000445593 TRIM41Q8WV44 630 aa27.7■■■□□ 2.03
LAPTM4B-201ENST00000445593 EHMT2Q96KQ7 1210 aa27.69■■■□□ 2.02
LAPTM4B-201ENST00000445593 UNC13AQ9UPW8 1703 aa27.65■■■□□ 2.02
LAPTM4B-201ENST00000445593 BAZ1AQ9NRL2 1556 aaPredicted RBP27.54■■■□□ 2
LAPTM4B-201ENST00000445593 SMARCA4P51532 1647 aa27.38■■□□□ 1.97
LAPTM4B-201ENST00000445593 BICRAQ9NZM4 1560 aa27.38■■□□□ 1.97
LAPTM4B-201ENST00000445593 PCGF6Q9BYE7 350 aa27.32■■□□□ 1.96
LAPTM4B-201ENST00000445593 TOP2AP11388 1531 aaKnown RBP27.19■■□□□ 1.94
LAPTM4B-201ENST00000445593 CCDC88BA6NC98 1476 aa27.18■■□□□ 1.94
LAPTM4B-201ENST00000445593 ABCC8Q09428 1581 aa27.06■■□□□ 1.92
LAPTM4B-201ENST00000445593 SMARCA2P51531 1590 aa27.06■■□□□ 1.92
LAPTM4B-201ENST00000445593 EIF4G1Q04637 1599 aaKnown RBP26.91■■□□□ 1.9
LAPTM4B-201ENST00000445593 ATAD2BQ9ULI0 1458 aa26.87■■□□□ 1.89
LAPTM4B-201ENST00000445593 PPARGC1BQ86YN6 1023 aaKnown RBP26.84■■□□□ 1.89
LAPTM4B-201ENST00000445593 BAZ1BQ9UIG0 1483 aaKnown RBP26.83■■□□□ 1.89
LAPTM4B-201ENST00000445593 SOGA1O94964 1423 aa26.71■■□□□ 1.87
LAPTM4B-201ENST00000445593 HRCP23327 699 aa26.7■■□□□ 1.87
LAPTM4B-201ENST00000445593 PEG3Q9GZU2 1588 aa26.7■■□□□ 1.86
LAPTM4B-201ENST00000445593 TRIM26Q12899 539 aaPredicted RBP26.68■■□□□ 1.86
LAPTM4B-201ENST00000445593 RUSC2Q8N2Y8 1516 aa26.62■■□□□ 1.85
LAPTM4B-201ENST00000445593 TTBK1Q5TCY1 1321 aaPredicted RBP26.62■■□□□ 1.85
LAPTM4B-201ENST00000445593 WRNQ14191 1432 aaPredicted RBP eCLIP26.59■■□□□ 1.85
LAPTM4B-201ENST00000445593 UBTFP17480 764 aaKnown RBP26.56■■□□□ 1.84
LAPTM4B-201ENST00000445593 CSRNP3Q8WYN3 585 aa26.5■■□□□ 1.83
LAPTM4B-201ENST00000445593 RANGAP1P46060 587 aaPredicted RBP26.45■■□□□ 1.82
LAPTM4B-201ENST00000445593 SYNJ1O43426 1573 aa26.43■■□□□ 1.82
LAPTM4B-201ENST00000445593 NCAPD3P42695 1498 aa26.35■■□□□ 1.81
LAPTM4B-201ENST00000445593 CEP162Q5TB80 1403 aa26.29■■□□□ 1.8
LAPTM4B-201ENST00000445593 HMGXB3Q12766 1538 aa26.23■■□□□ 1.79
LAPTM4B-201ENST00000445593 EEA1Q15075 1411 aa26.21■■□□□ 1.79
LAPTM4B-201ENST00000445593 TNIKQ9UKE5 1360 aa26.17■■□□□ 1.78
LAPTM4B-201ENST00000445593 GOLGA3Q08378 1498 aa26.15■■□□□ 1.78
LAPTM4B-201ENST00000445593 CC2D2AQ9P2K1 1620 aa26.08■■□□□ 1.77
LAPTM4B-201ENST00000445593 RAPGEF2Q9Y4G8 1499 aa26.04■■□□□ 1.76
LAPTM4B-201ENST00000445593 CEP164Q9UPV0 1460 aa26.03■■□□□ 1.76
LAPTM4B-201ENST00000445593 TOP2BQ02880 1626 aa26.03■■□□□ 1.76
LAPTM4B-201ENST00000445593 CFTRP13569 1480 aa26.03■■□□□ 1.76
LAPTM4B-201ENST00000445593 CUX1P39880 1505 aa26.01■■□□□ 1.75
LAPTM4B-201ENST00000445593 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP25.97■■□□□ 1.75
LAPTM4B-201ENST00000445593 CADPSQ9ULU8 1353 aa25.94■■□□□ 1.74
LAPTM4B-201ENST00000445593 CLIP1P30622 1438 aa25.93■■□□□ 1.74
LAPTM4B-201ENST00000445593 DNAJC5BQ9UF47 199 aa25.92■■□□□ 1.74
LAPTM4B-201ENST00000445593 BIVM-ERCC5R4GMW8 1640 aa25.87■■□□□ 1.73
LAPTM4B-201ENST00000445593 KIF21BO75037 1637 aa25.86■■□□□ 1.73
LAPTM4B-201ENST00000445593 NESP48681 1621 aa25.82■■□□□ 1.72
LAPTM4B-201ENST00000445593 CCER1Q8TC90 406 aaPredicted RBP25.82■■□□□ 1.72
LAPTM4B-201ENST00000445593 KIF27Q86VH2 1401 aa25.8■■□□□ 1.72
LAPTM4B-201ENST00000445593 APLP2Q06481 763 aa25.79■■□□□ 1.72
LAPTM4B-201ENST00000445593 CUX2O14529 1486 aa25.75■■□□□ 1.71
LAPTM4B-201ENST00000445593 ZEB1P37275 1124 aaPredicted RBP25.73■■□□□ 1.71
LAPTM4B-201ENST00000445593 HNRNPUL2Q1KMD3 747 aaKnown RBP25.71■■□□□ 1.71
LAPTM4B-201ENST00000445593 FANCD2Q9BXW9 1451 aa25.71■■□□□ 1.71
LAPTM4B-201ENST00000445593 FGD5Q6ZNL6 1462 aa25.69■■□□□ 1.7
LAPTM4B-201ENST00000445593 PRXQ9BXM0 1461 aa25.68■■□□□ 1.7
LAPTM4B-201ENST00000445593 VPS8Q8N3P4 1428 aa25.65■■□□□ 1.7
LAPTM4B-201ENST00000445593 RAD54L2Q9Y4B4 1467 aa25.59■■□□□ 1.69
LAPTM4B-201ENST00000445593 IGF1RP08069 1367 aa25.57■■□□□ 1.68
LAPTM4B-201ENST00000445593 PRDM2Q13029 1718 aa25.57■■□□□ 1.68
LAPTM4B-201ENST00000445593 P3H3Q8IVL6 736 aa25.54■■□□□ 1.68
LAPTM4B-201ENST00000445593 ERICH3Q5RHP9 1530 aa25.53■■□□□ 1.68
LAPTM4B-201ENST00000445593 CARMIL1Q5VZK9 1371 aa25.51■■□□□ 1.67
LAPTM4B-201ENST00000445593 KANK4Q5T7N3 995 aaPredicted RBP25.49■■□□□ 1.67
LAPTM4B-201ENST00000445593 ARAP1Q96P48 1450 aa25.49■■□□□ 1.67
LAPTM4B-201ENST00000445593 ATP1B4Q9UN42 357 aaPredicted RBP25.47■■□□□ 1.67
LAPTM4B-201ENST00000445593 TOPBP1Q92547 1522 aa25.44■■□□□ 1.66
LAPTM4B-201ENST00000445593 POLA1P09884 1462 aaPredicted RBP25.43■■□□□ 1.66
LAPTM4B-201ENST00000445593 PELP1Q8IZL8 1130 aaKnown RBP25.41■■□□□ 1.66
LAPTM4B-201ENST00000445593 TDRD9Q8NDG6 1382 aaKnown RBP25.39■■□□□ 1.65
LAPTM4B-201ENST00000445593 ARHGAP35Q9NRY4 1499 aa25.37■■□□□ 1.65
LAPTM4B-201ENST00000445593 DNMBPQ6XZF7 1577 aa25.37■■□□□ 1.65
LAPTM4B-201ENST00000445593 ITGAEP38570 1179 aa25.35■■□□□ 1.65
LAPTM4B-201ENST00000445593 URB2Q14146 1524 aaKnown RBP25.34■■□□□ 1.65
LAPTM4B-201ENST00000445593 PDS5BQ9NTI5 1447 aa25.28■■□□□ 1.64
LAPTM4B-201ENST00000445593 LAMC3Q9Y6N6 1575 aa25.28■■□□□ 1.64
LAPTM4B-201ENST00000445593 ABCA10Q8WWZ4 1543 aa25.23■■□□□ 1.63
LAPTM4B-201ENST00000445593 KIF21AQ7Z4S6 1674 aa25.18■■□□□ 1.62
LAPTM4B-201ENST00000445593 FHOD3Q2V2M9 1422 aa25.17■■□□□ 1.62
LAPTM4B-201ENST00000445593 GAPVD1Q14C86 1478 aa25.09■■□□□ 1.61
LAPTM4B-201ENST00000445593 AQRO60306 1485 aaKnown RBP eCLIP25.03■■□□□ 1.6
LAPTM4B-201ENST00000445593 FAM50AQ14320 339 aaKnown RBP25.03■■□□□ 1.6
Retrieved 100 of 20,778 RNA–protein pairs in 7.4 ms