RNA–Protein interactions for RNA: ENST00000619747.1

LAPTM4B-204, Transcript of lysosomal protein transmembrane 4 beta, humanhuman

TSL 1 (best) BASIC

Gene LAPTM4B, Length 2,758 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LAPTM4B-204ENST00000619747 NISCHQ9Y2I1 1504 aa41.41■■■■■ 4.22
LAPTM4B-204ENST00000619747 CCDC180Q9P1Z9 1646 aa35.35■■■■□ 3.25
LAPTM4B-204ENST00000619747 SHROOM4Q9ULL8 1493 aa35.14■■■■□ 3.22
LAPTM4B-204ENST00000619747 DCAF8L2P0C7V8 631 aa34.96■■■■□ 3.19
LAPTM4B-204ENST00000619747 ZCCHC6Q5VYS8 1495 aaKnown RBP34.85■■■■□ 3.17
LAPTM4B-204ENST00000619747 SUPT5HO00267 1087 aaKnown RBP34.19■■■■□ 3.06
LAPTM4B-204ENST00000619747 DCAF1Q9Y4B6 1507 aa33.82■■■■□ 3.01
LAPTM4B-204ENST00000619747 ABCC9O60706 1549 aa33.63■■■□□ 2.97
LAPTM4B-204ENST00000619747 SCRIBQ14160 1630 aa33.25■■■□□ 2.91
LAPTM4B-204ENST00000619747 MYO15BQ96JP2 1530 aa33.07■■■□□ 2.88
LAPTM4B-204ENST00000619747 NACADO15069 1562 aa32.92■■■□□ 2.86
LAPTM4B-204ENST00000619747 CHIC1Q5VXU3 224 aa32.77■■■□□ 2.84
LAPTM4B-204ENST00000619747 RSF1Q96T23 1441 aaPredicted RBP32.58■■■□□ 2.81
LAPTM4B-204ENST00000619747 RB1CC1Q8TDY2 1594 aa32.56■■■□□ 2.8
LAPTM4B-204ENST00000619747 CECR2Q9BXF3 1484 aa32.46■■■□□ 2.79
LAPTM4B-204ENST00000619747 MROH2BQ7Z745 1585 aa32.22■■■□□ 2.75
LAPTM4B-204ENST00000619747 PABPN1Q86U42 306 aaKnown RBP eCLIP32.14■■■□□ 2.74
LAPTM4B-204ENST00000619747 UNC13AQ9UPW8 1703 aa32.02■■■□□ 2.72
LAPTM4B-204ENST00000619747 WIZO95785 1651 aa32■■■□□ 2.71
LAPTM4B-204ENST00000619747 LOC105371045A0A1W2PR82 267 aa31.91■■■□□ 2.7
LAPTM4B-204ENST00000619747 BAZ1AQ9NRL2 1556 aaPredicted RBP31.83■■■□□ 2.69
LAPTM4B-204ENST00000619747 TRIM41Q8WV44 630 aa31.81■■■□□ 2.68
LAPTM4B-204ENST00000619747 BICRAQ9NZM4 1560 aa31.7■■■□□ 2.66
LAPTM4B-204ENST00000619747 FAM9AQ8IZU1 332 aaPredicted RBP31.67■■■□□ 2.66
LAPTM4B-204ENST00000619747 SMARCA4P51532 1647 aa31.64■■■□□ 2.66
LAPTM4B-204ENST00000619747 EHMT2Q96KQ7 1210 aa31.53■■■□□ 2.64
LAPTM4B-204ENST00000619747 TOP2AP11388 1531 aaKnown RBP31.4■■■□□ 2.62
LAPTM4B-204ENST00000619747 CCDC88BA6NC98 1476 aa31.36■■■□□ 2.61
LAPTM4B-204ENST00000619747 HRCP23327 699 aa31.26■■■□□ 2.59
LAPTM4B-204ENST00000619747 SMARCA2P51531 1590 aa31.24■■■□□ 2.59
LAPTM4B-204ENST00000619747 PCGF6Q9BYE7 350 aa31.21■■■□□ 2.59
LAPTM4B-204ENST00000619747 ABCC8Q09428 1581 aa31.12■■■□□ 2.57
LAPTM4B-204ENST00000619747 PELP1Q8IZL8 1130 aaKnown RBP31.11■■■□□ 2.57
LAPTM4B-204ENST00000619747 EIF4G1Q04637 1599 aaKnown RBP31.1■■■□□ 2.57
LAPTM4B-204ENST00000619747 ATAD2BQ9ULI0 1458 aa31.05■■■□□ 2.56
LAPTM4B-204ENST00000619747 PEG3Q9GZU2 1588 aa30.97■■■□□ 2.55
LAPTM4B-204ENST00000619747 BAZ1BQ9UIG0 1483 aaKnown RBP30.95■■■□□ 2.55
LAPTM4B-204ENST00000619747 PPARGC1BQ86YN6 1023 aaKnown RBP30.76■■■□□ 2.51
LAPTM4B-204ENST00000619747 SOGA1O94964 1423 aa30.73■■■□□ 2.51
LAPTM4B-204ENST00000619747 WRNQ14191 1432 aaPredicted RBP eCLIP30.64■■■□□ 2.5
LAPTM4B-204ENST00000619747 TRIM26Q12899 539 aaPredicted RBP30.62■■■□□ 2.49
LAPTM4B-204ENST00000619747 RUSC2Q8N2Y8 1516 aa30.62■■■□□ 2.49
LAPTM4B-204ENST00000619747 NCAPD3P42695 1498 aa30.52■■■□□ 2.48
LAPTM4B-204ENST00000619747 CSRNP3Q8WYN3 585 aa30.51■■■□□ 2.48
LAPTM4B-204ENST00000619747 SYNJ1O43426 1573 aa30.46■■■□□ 2.47
LAPTM4B-204ENST00000619747 UBTFP17480 764 aaKnown RBP30.45■■■□□ 2.47
LAPTM4B-204ENST00000619747 HMGXB3Q12766 1538 aa30.39■■■□□ 2.45
LAPTM4B-204ENST00000619747 TTBK1Q5TCY1 1321 aaPredicted RBP30.3■■■□□ 2.44
LAPTM4B-204ENST00000619747 EEA1Q15075 1411 aa30.27■■■□□ 2.44
LAPTM4B-204ENST00000619747 CEP162Q5TB80 1403 aa30.22■■■□□ 2.43
LAPTM4B-204ENST00000619747 RANGAP1P46060 587 aaPredicted RBP30.18■■■□□ 2.42
LAPTM4B-204ENST00000619747 TNIKQ9UKE5 1360 aa30.17■■■□□ 2.42
LAPTM4B-204ENST00000619747 CC2D2AQ9P2K1 1620 aa30.15■■■□□ 2.42
LAPTM4B-204ENST00000619747 CFTRP13569 1480 aa30.11■■■□□ 2.41
LAPTM4B-204ENST00000619747 GOLGA3Q08378 1498 aa30.11■■■□□ 2.41
LAPTM4B-204ENST00000619747 TOP2BQ02880 1626 aa30.08■■■□□ 2.41
LAPTM4B-204ENST00000619747 SCAF1Q9H7N4 1312 aaKnown RBP30.06■■■□□ 2.4
LAPTM4B-204ENST00000619747 MYT1Q01538 1121 aa30.06■■■□□ 2.4
LAPTM4B-204ENST00000619747 CUX1P39880 1505 aa30.01■■■□□ 2.39
LAPTM4B-204ENST00000619747 CEP164Q9UPV0 1460 aa30■■■□□ 2.39
LAPTM4B-204ENST00000619747 RAPGEF2Q9Y4G8 1499 aa29.97■■■□□ 2.39
LAPTM4B-204ENST00000619747 CADPSQ9ULU8 1353 aa29.97■■■□□ 2.39
LAPTM4B-204ENST00000619747 BIVM-ERCC5R4GMW8 1640 aa29.93■■■□□ 2.38
LAPTM4B-204ENST00000619747 KIF21BO75037 1637 aa29.86■■■□□ 2.37
LAPTM4B-204ENST00000619747 DNAJC5BQ9UF47 199 aa29.85■■■□□ 2.37
LAPTM4B-204ENST00000619747 CLIP1P30622 1438 aa29.82■■■□□ 2.36
LAPTM4B-204ENST00000619747 NESP48681 1621 aa29.75■■■□□ 2.35
LAPTM4B-204ENST00000619747 KIF27Q86VH2 1401 aa29.75■■■□□ 2.35
LAPTM4B-204ENST00000619747 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP29.7■■■□□ 2.34
LAPTM4B-204ENST00000619747 FANCD2Q9BXW9 1451 aa29.67■■■□□ 2.34
LAPTM4B-204ENST00000619747 PRXQ9BXM0 1461 aa29.66■■■□□ 2.34
LAPTM4B-204ENST00000619747 CUX2O14529 1486 aa29.65■■■□□ 2.34
LAPTM4B-204ENST00000619747 PRDM2Q13029 1718 aa29.65■■■□□ 2.34
LAPTM4B-204ENST00000619747 FGD5Q6ZNL6 1462 aa29.62■■■□□ 2.33
LAPTM4B-204ENST00000619747 APLP2Q06481 763 aa29.58■■■□□ 2.33
LAPTM4B-204ENST00000619747 ZEB1P37275 1124 aaPredicted RBP29.55■■■□□ 2.32
LAPTM4B-204ENST00000619747 VPS8Q8N3P4 1428 aa29.54■■■□□ 2.32
LAPTM4B-204ENST00000619747 CCER1Q8TC90 406 aaPredicted RBP29.53■■■□□ 2.32
LAPTM4B-204ENST00000619747 IGF1RP08069 1367 aa29.52■■■□□ 2.32
LAPTM4B-204ENST00000619747 ERICH3Q5RHP9 1530 aa29.5■■■□□ 2.31
LAPTM4B-204ENST00000619747 RAD54L2Q9Y4B4 1467 aa29.47■■■□□ 2.31
LAPTM4B-204ENST00000619747 HNRNPUL2Q1KMD3 747 aaKnown RBP29.41■■■□□ 2.3
LAPTM4B-204ENST00000619747 CARMIL1Q5VZK9 1371 aa29.4■■■□□ 2.3
LAPTM4B-204ENST00000619747 TOPBP1Q92547 1522 aa29.38■■■□□ 2.29
LAPTM4B-204ENST00000619747 POLA1P09884 1462 aaPredicted RBP29.34■■■□□ 2.29
LAPTM4B-204ENST00000619747 ARAP1Q96P48 1450 aa29.34■■■□□ 2.29
LAPTM4B-204ENST00000619747 DNMBPQ6XZF7 1577 aa29.32■■■□□ 2.28
LAPTM4B-204ENST00000619747 KANK4Q5T7N3 995 aaPredicted RBP29.28■■■□□ 2.28
LAPTM4B-204ENST00000619747 LAMC3Q9Y6N6 1575 aa29.28■■■□□ 2.28
LAPTM4B-204ENST00000619747 P3H3Q8IVL6 736 aa29.27■■■□□ 2.28
LAPTM4B-204ENST00000619747 URB2Q14146 1524 aaKnown RBP29.26■■■□□ 2.27
LAPTM4B-204ENST00000619747 ARHGAP35Q9NRY4 1499 aa29.23■■■□□ 2.27
LAPTM4B-204ENST00000619747 TDRD9Q8NDG6 1382 aaKnown RBP29.22■■■□□ 2.27
LAPTM4B-204ENST00000619747 PDS5BQ9NTI5 1447 aa29.22■■■□□ 2.27
LAPTM4B-204ENST00000619747 ABCA10Q8WWZ4 1543 aa29.18■■■□□ 2.26
LAPTM4B-204ENST00000619747 ATP1B4Q9UN42 357 aaPredicted RBP29.13■■■□□ 2.25
LAPTM4B-204ENST00000619747 KIF21AQ7Z4S6 1674 aa29.09■■■□□ 2.25
LAPTM4B-204ENST00000619747 ACIN1Q9UKV3 1341 aaKnown RBP29.03■■■□□ 2.24
LAPTM4B-204ENST00000619747 NEUROD1Q13562 356 aa28.99■■■□□ 2.23
LAPTM4B-204ENST00000619747 ITGAEP38570 1179 aa28.96■■■□□ 2.23
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms