Protein–RNA interactions for Protein: O75533

SF3B1, Splicing factor 3B subunit 1, humanhuman

Known RBP eCLIP

Length 1,304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1O75533 ORC4-212ENST00000495601 611 ntTSL 211.54□□□□□ -0.561e-6■■■■□ 20.2
SF3B1O75533 ORC4-213ENST00000496670 645 ntTSL 53.31□□□□□ -1.881e-6■■■■□ 20.2
SF3B1O75533 ORC4-203ENST00000416719 571 ntTSL 33.02□□□□□ -1.931e-6■■■■□ 20.2
SF3B1O75533 HSP90AA1-204ENST00000554401 1710 ntTSL 1 (best)9.27□□□□□ -0.923e-6■■■■□ 20.2
SF3B1O75533 SF1-220ENST00000626028 704 ntTSL 2 BASIC24.48■■□□□ 1.513e-8■■■■□ 20.2
SF3B1O75533 SF1-221ENST00000633899 591 ntTSL 422.77■■□□□ 1.243e-8■■■■□ 20.2
SF3B1O75533 SF1-207ENST00000413951 623 ntTSL 218.42■□□□□ 0.543e-8■■■■□ 20.2
SF3B1O75533 SF1-208ENST00000432725 475 ntTSL 416.91■□□□□ 0.33e-8■■■■□ 20.2
SF3B1O75533 SREBF1-210ENST00000471445 936 ntTSL 223.01■■□□□ 1.275e-7■■■■□ 20.1
SF3B1O75533 HIF1A-206ENST00000553999 616 ntTSL 422.6■■□□□ 1.214e-6■■■■□ 20.1
SF3B1O75533 HIF1A-211ENST00000557446 559 ntTSL 521.55■■□□□ 1.044e-6■■■■□ 20.1
SF3B1O75533 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.524e-6■■■■□ 20.1
SF3B1O75533 SREBF1-219ENST00000580540 540 ntTSL 418.19■□□□□ 0.55e-7■■■■□ 20.1
SF3B1O75533 SREBF1-221ENST00000583080 482 ntTSL 517.93■□□□□ 0.465e-7■■■■□ 20.1
SF3B1O75533 TMC6-214ENST00000590162 517 ntTSL 216.5■□□□□ 0.235e-7■■■■□ 20.1
SF3B1O75533 DCAF16-201ENST00000382247 4548 ntAPPRIS P1 TSL 2 BASIC13.27□□□□□ -0.285e-7■■■■□ 20.1
SF3B1O75533 HIF1A-203ENST00000394997 3922 ntAPPRIS ALT1 TSL 1 (best) BASIC10.63□□□□□ -0.714e-6■■■■□ 20.1
SF3B1O75533 HIF1A-202ENST00000337138 3919 ntAPPRIS P2 TSL 1 (best) BASIC10.22□□□□□ -0.774e-6■■■■□ 20.1
SF3B1O75533 RBMX-205ENST00000496459 2041 ntTSL 26.68□□□□□ -1.345e-7■■■■□ 20.1
SF3B1O75533 LINC01203-201ENST00000419566 580 ntTSL 2 BASIC6.13□□□□□ -1.435e-7■■■■□ 20.1
SF3B1O75533 HIF1A-210ENST00000557206 767 ntTSL 33.43□□□□□ -1.864e-6■■■■□ 20.1
SF3B1O75533 HIF1A-201ENST00000323441 3555 ntTSL 1 (best) BASIC3.34□□□□□ -1.874e-6■■■■□ 20.1
SF3B1O75533 HIF1A-212ENST00000557538 3468 ntTSL 1 (best) BASIC1.32□□□□□ -2.24e-6■■■■□ 20.1
SF3B1O75533 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC0.85□□□□□ -2.274e-6■■■■□ 20.1
SF3B1O75533 SRSF7-210ENST00000452806 747 ntTSL 21.92□□□□□ -2.11e-7■■■■□ 20.1
SF3B1O75533 USP48-214ENST00000532737 680 ntTSL 426.86■■□□□ 1.895e-6■■■■□ 20.1
SF3B1O75533 CASC3-207ENST00000581849 580 ntTSL 224.6■■□□□ 1.535e-6■■■■□ 20.1
SF3B1O75533 CASC3-203ENST00000418132 1986 ntTSL 1 (best)21.87■■□□□ 1.095e-6■■■■□ 20.1
SF3B1O75533 LONP1-214ENST00000591321 913 ntTSL 320.24■□□□□ 0.835e-6■■■■□ 20.1
SF3B1O75533 CRKL-202ENST00000411769 2037 ntTSL 1 (best)19.95■□□□□ 0.785e-6■■■■□ 20.1
SF3B1O75533 SNAP29-203ENST00000490458 972 ntTSL 218.14■□□□□ 0.495e-6■■■■□ 20.1
SF3B1O75533 CRKL-201ENST00000354336 5325 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.475e-6■■■■□ 20.1
SF3B1O75533 USP48-210ENST00000489108 443 ntTSL 217.99■□□□□ 0.475e-6■■■■□ 20.1
SF3B1O75533 AHNAK-205ENST00000530124 701 ntAPPRIS ALT2 TSL 3 BASIC15.6■□□□□ 0.095e-6■■■■□ 20.1
SF3B1O75533 CASC3-201ENST00000264645 4116 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.035e-6■■■■□ 20.1
SF3B1O75533 DENND4B-204ENST00000464048 551 ntTSL 214.11□□□□□ -0.155e-6■■■■□ 20.1
SF3B1O75533 CRELD1-208ENST00000467713 540 ntTSL 213.39□□□□□ -0.275e-6■■■■□ 20.1
SF3B1O75533 HMGCS1-201ENST00000325110 3506 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.325e-6■■■■□ 20.1
SF3B1O75533 CASC3-208ENST00000583649 577 ntTSL 312.46□□□□□ -0.415e-6■■■■□ 20.1
SF3B1O75533 HMGCS1-202ENST00000433297 3466 ntAPPRIS P1 TSL 5 BASIC11.94□□□□□ -0.55e-6■■■■□ 20.1
SF3B1O75533 TRIM59-201ENST00000309784 3867 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.545e-6■■■■□ 20.1
SF3B1O75533 CASC3-210ENST00000584997 543 ntTSL 311.55□□□□□ -0.565e-6■■■■□ 20.1
SF3B1O75533 USP48-212ENST00000527823 554 ntTSL 48.98□□□□□ -0.975e-6■■■■□ 20.1
SF3B1O75533 TRIM59-208ENST00000543469 4615 ntTSL 5 BASIC8.48□□□□□ -1.055e-6■■■■□ 20.1
SF3B1O75533 KDM3B-208ENST00000512928 627 ntTSL 27.13□□□□□ -1.275e-6■■■■□ 20.1
SF3B1O75533 SUPV3L1-207ENST00000497254 666 ntTSL 25.8□□□□□ -1.485e-6■■■■□ 20.1
SF3B1O75533 ATF7IP2-213ENST00000565616 610 ntTSL 34.06□□□□□ -1.765e-6■■■■□ 20.1
SF3B1O75533 C5orf51-201ENST00000381647 5241 ntAPPRIS P1 TSL 1 (best) BASIC3.47□□□□□ -1.855e-6■■■■□ 20.1
SF3B1O75533 KDM3A-208ENST00000463013 577 ntTSL 32.16□□□□□ -2.065e-6■■■■□ 20.1
SF3B1O75533 EPB41-208ENST00000460378 5212 ntTSL 1 (best)10.78□□□□□ -0.684e-7■■■■□ 19.9
SF3B1O75533 EPB41-209ENST00000462032 752 ntTSL 26.22□□□□□ -1.414e-7■■■■□ 19.9
SF3B1O75533 GAS5-209ENST00000430245 723 ntTSL 3 BASIC15.56■□□□□ 0.081e-7■■■■□ 19.9
SF3B1O75533 GAS5-222ENST00000451607 1007 ntTSL 5 BASIC12.1□□□□□ -0.471e-7■■■■□ 19.9
SF3B1O75533 GAS5-224ENST00000454068 688 ntTSL 5 BASIC10.64□□□□□ -0.711e-7■■■■□ 19.9
SF3B1O75533 GAS5-214ENST00000436656 822 ntTSL 310.4□□□□□ -0.741e-7■■■■□ 19.9
SF3B1O75533 GAS5-210ENST00000431268 1698 ntTSL 29.59□□□□□ -0.871e-7■■■■□ 19.9
SF3B1O75533 GAS5-219ENST00000449289 542 ntTSL 3 BASIC8.83□□□□□ -11e-7■■■■□ 19.9
SF3B1O75533 GAS5-220ENST00000449589 712 ntTSL 38.83□□□□□ -11e-7■■■■□ 19.9
SF3B1O75533 GAS5-228ENST00000456812 723 ntTSL 37.45□□□□□ -1.221e-7■■■■□ 19.9
SF3B1O75533 GAS5-206ENST00000422183 745 ntTSL 26.55□□□□□ -1.361e-7■■■■□ 19.9
SF3B1O75533 GAS5-202ENST00000414075 413 ntTSL 2 BASIC6.51□□□□□ -1.371e-7■■■■□ 19.9
SF3B1O75533 GAS5-218ENST00000448718 565 ntTSL 2 BASIC6.48□□□□□ -1.371e-7■■■■□ 19.9
SF3B1O75533 GAS5-201ENST00000412059 979 ntTSL 56.1□□□□□ -1.431e-7■■■■□ 19.9
SF3B1O75533 GAS5-223ENST00000452197 483 ntTSL 3 BASIC4.24□□□□□ -1.731e-7■■■■□ 19.9
SF3B1O75533 GAS5-213ENST00000436285 772 ntTSL 23.79□□□□□ -1.81e-7■■■■□ 19.9
SF3B1O75533 GAS5-221ENST00000450589 632 ntTSL 1 (best) BASIC2.64□□□□□ -1.991e-7■■■■□ 19.9
SF3B1O75533 RABGGTB-206ENST00000467748 468 ntTSL 32.2□□□□□ -2.061e-6■■■■□ 19.9
SF3B1O75533 WDR45B-203ENST00000571817 889 ntTSL 322.35■■□□□ 1.172e-6■■■■□ 19.9
SF3B1O75533 WDR45B-201ENST00000392325 2587 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.312e-6■■■■□ 19.9
SF3B1O75533 WDR45B-205ENST00000572583 2322 ntTSL 1 (best)16.21■□□□□ 0.192e-6■■■■□ 19.9
SF3B1O75533 WDR45B-206ENST00000573616 896 ntTSL 515.78■□□□□ 0.122e-6■■■■□ 19.9
SF3B1O75533 WDR45B-204ENST00000571835 869 ntTSL 59.61□□□□□ -0.872e-6■■■■□ 19.9
SF3B1O75533 EIF4A2-223ENST00000494445 629 ntTSL 29.95□□□□□ -0.821e-7■■■■□ 19.8
SF3B1O75533 EIF4A2-225ENST00000496382 460 ntTSL 1 (best)6.8□□□□□ -1.321e-7■■■■□ 19.8
SF3B1O75533 EIF4A2-209ENST00000461021 575 ntTSL 24.76□□□□□ -1.651e-7■■■■□ 19.8
SF3B1O75533 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC21.17■□□□□ 0.989e-7■■■■□ 19.8
SF3B1O75533 SRRM2-220ENST00000574593 1440 ntTSL 317.3■□□□□ 0.366e-7■■■■□ 19.7
SF3B1O75533 RSRC2-210ENST00000526560 545 ntTSL 413.34□□□□□ -0.274e-6■■■■□ 19.7
SF3B1O75533 ZWILCH-203ENST00000535141 2206 ntTSL 2 BASIC13.84□□□□□ -0.199e-8■■■■□ 19.7
SF3B1O75533 ZWILCH-209ENST00000565627 1845 ntTSL 2 BASIC13.61□□□□□ -0.239e-8■■■■□ 19.7
SF3B1O75533 SEC24C-205ENST00000496827 948 ntTSL 313.29□□□□□ -0.289e-8■■■■□ 19.7
SF3B1O75533 ZWILCH-202ENST00000446801 3256 ntTSL 1 (best) BASIC11.6□□□□□ -0.559e-8■■■■□ 19.7
SF3B1O75533 ZWILCH-214ENST00000613446 3181 ntTSL 5 BASIC11.14□□□□□ -0.639e-8■■■■□ 19.7
SF3B1O75533 ZWILCH-201ENST00000307897 3960 ntAPPRIS P1 TSL 1 (best) BASIC9.91□□□□□ -0.829e-8■■■■□ 19.7
SF3B1O75533 SLC3A2-218ENST00000541649 515 ntTSL 37.89□□□□□ -1.152e-9■■■■□ 19.6
SF3B1O75533 LINC00324-201ENST00000315707 2082 ntTSL 1 (best) BASIC14.18□□□□□ -0.148e-7■■■■□ 19.6
SF3B1O75533 WDR45B-208ENST00000574828 765 ntTSL 317.4■□□□□ 0.382e-6■■■■□ 19.5
SF3B1O75533 MAN2C1-214ENST00000563539 659 ntTSL 418.07■□□□□ 0.482e-7■■■■□ 19.4
SF3B1O75533 MAN2C1-226ENST00000565784 571 ntTSL 418.07■□□□□ 0.482e-7■■■■□ 19.4
SF3B1O75533 YIPF5-202ENST00000448443 2255 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.522e-7■■■■□ 19.4
SF3B1O75533 YIPF5-204ENST00000513112 2135 ntTSL 1 (best) BASIC11.56□□□□□ -0.562e-7■■■■□ 19.4
SF3B1O75533 YIPF5-201ENST00000274496 3147 ntAPPRIS P1 TSL 1 (best) BASIC8.99□□□□□ -0.972e-7■■■■□ 19.4
SF3B1O75533 SLMAP-205ENST00000417128 3066 ntTSL 1 (best)7.23□□□□□ -1.252e-7■■■■□ 19.4
SF3B1O75533 CALCOCO2-212ENST00000509014 577 ntTSL 25.49□□□□□ -1.535e-6■■■■□ 19.4
SF3B1O75533 GAS5-225ENST00000454813 621 ntTSL 36.55□□□□□ -1.362e-10■■■■□ 19.4
SF3B1O75533 GAS5-207ENST00000422207 643 ntTSL 26.1□□□□□ -1.432e-10■■■■□ 19.4
SF3B1O75533 GAS5-217ENST00000444470 424 ntTSL 26.1□□□□□ -1.432e-10■■■■□ 19.4
SF3B1O75533 GAS5-212ENST00000434796 575 ntTSL 20.77□□□□□ -2.292e-10■■■■□ 19.4
SF3B1O75533 DCP2-208ENST00000515408 8029 ntTSL 1 (best) BASIC9.26□□□□□ -0.934e-6■■■■□ 19.4
SF3B1O75533 DCP2-201ENST00000389063 8947 ntAPPRIS P1 TSL 1 (best) BASIC7.45□□□□□ -1.224e-6■■■■□ 19.4
Retrieved 100 of 46,956 protein–RNA pairs in 4212.9 ms