RNA–Protein interactions for RNA: ENST00000418132.7

CASC3-203, Transcript of CASC3, exon junction complex subunit, humanhuman

TSL 1 (best)

Gene CASC3, Length 1,986 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CASC3-203ENST00000418132 NISCHQ9Y2I1 1504 aa47.71■■■■■ 5.23
CASC3-203ENST00000418132 CCDC180Q9P1Z9 1646 aa41.75■■■■■ 4.27
CASC3-203ENST00000418132 ZCCHC6Q5VYS8 1495 aaKnown RBP40.04■■■■■ 4
CASC3-203ENST00000418132 ABCC9O60706 1549 aa39.58■■■■□ 3.93
CASC3-203ENST00000418132 DCAF1Q9Y4B6 1507 aa39.5■■■■□ 3.91
CASC3-203ENST00000418132 DCAF8L2P0C7V8 631 aa39.33■■■■□ 3.89
CASC3-203ENST00000418132 MYO15BQ96JP2 1530 aa39.14■■■■□ 3.86
CASC3-203ENST00000418132 NACADO15069 1562 aa38.92■■■■□ 3.82
CASC3-203ENST00000418132 SHROOM4Q9ULL8 1493 aa38.64■■■■□ 3.78
CASC3-203ENST00000418132 RB1CC1Q8TDY2 1594 aa38.63■■■■□ 3.77
CASC3-203ENST00000418132 SCRIBQ14160 1630 aa38.28■■■■□ 3.72
CASC3-203ENST00000418132 UNC13AQ9UPW8 1703 aa37.83■■■■□ 3.65
CASC3-203ENST00000418132 BICRAQ9NZM4 1560 aa37.47■■■■□ 3.59
CASC3-203ENST00000418132 PABPN1Q86U42 306 aaKnown RBP eCLIP37.24■■■■□ 3.55
CASC3-203ENST00000418132 SUPT5HO00267 1087 aaKnown RBP37.07■■■■□ 3.52
CASC3-203ENST00000418132 CECR2Q9BXF3 1484 aa37.06■■■■□ 3.52
CASC3-203ENST00000418132 RSF1Q96T23 1441 aaPredicted RBP36.91■■■■□ 3.5
CASC3-203ENST00000418132 BAZ1AQ9NRL2 1556 aaPredicted RBP36.86■■■■□ 3.49
CASC3-203ENST00000418132 MROH2BQ7Z745 1585 aa36.83■■■■□ 3.49
CASC3-203ENST00000418132 SMARCA4P51532 1647 aa36.72■■■■□ 3.47
CASC3-203ENST00000418132 WIZO95785 1651 aa36.51■■■■□ 3.44
CASC3-203ENST00000418132 EIF4G1Q04637 1599 aaKnown RBP36.34■■■■□ 3.41
CASC3-203ENST00000418132 PEG3Q9GZU2 1588 aa36.33■■■■□ 3.41
CASC3-203ENST00000418132 ATAD2BQ9ULI0 1458 aa36.17■■■■□ 3.38
CASC3-203ENST00000418132 SMARCA2P51531 1590 aa36.16■■■■□ 3.38
CASC3-203ENST00000418132 TOP2AP11388 1531 aaKnown RBP36.16■■■■□ 3.38
CASC3-203ENST00000418132 BAZ1BQ9UIG0 1483 aaKnown RBP35.94■■■■□ 3.34
CASC3-203ENST00000418132 NCAPD3P42695 1498 aa35.92■■■■□ 3.34
CASC3-203ENST00000418132 HMGXB3Q12766 1538 aa35.86■■■■□ 3.33
CASC3-203ENST00000418132 CC2D2AQ9P2K1 1620 aa35.85■■■■□ 3.33
CASC3-203ENST00000418132 CCDC88BA6NC98 1476 aa35.76■■■■□ 3.31
CASC3-203ENST00000418132 CHIC1Q5VXU3 224 aa35.43■■■■□ 3.26
CASC3-203ENST00000418132 DNAJC5BQ9UF47 199 aa35.1■■■■□ 3.21
CASC3-203ENST00000418132 CFTRP13569 1480 aa35.05■■■■□ 3.2
CASC3-203ENST00000418132 CADPSQ9ULU8 1353 aa34.96■■■■□ 3.19
CASC3-203ENST00000418132 ABCC8Q09428 1581 aa34.91■■■■□ 3.18
CASC3-203ENST00000418132 TRIM41Q8WV44 630 aa34.91■■■■□ 3.18
CASC3-203ENST00000418132 PRDM2Q13029 1718 aa34.88■■■■□ 3.17
CASC3-203ENST00000418132 WRNQ14191 1432 aaPredicted RBP eCLIP34.74■■■■□ 3.15
CASC3-203ENST00000418132 LAMC3Q9Y6N6 1575 aa34.74■■■■□ 3.15
CASC3-203ENST00000418132 NESP48681 1621 aa34.69■■■■□ 3.14
CASC3-203ENST00000418132 SYNJ1O43426 1573 aa34.61■■■■□ 3.13
CASC3-203ENST00000418132 FANCD2Q9BXW9 1451 aa34.56■■■■□ 3.12
CASC3-203ENST00000418132 TOP2BQ02880 1626 aa34.51■■■■□ 3.12
CASC3-203ENST00000418132 BIVM-ERCC5R4GMW8 1640 aa34.49■■■■□ 3.11
CASC3-203ENST00000418132 CUX1P39880 1505 aa34.46■■■■□ 3.11
CASC3-203ENST00000418132 PDS5BQ9NTI5 1447 aa34.45■■■■□ 3.11
CASC3-203ENST00000418132 CEP164Q9UPV0 1460 aa34.36■■■■□ 3.09
CASC3-203ENST00000418132 KIF21AQ7Z4S6 1674 aa34.3■■■■□ 3.08
CASC3-203ENST00000418132 DNMBPQ6XZF7 1577 aa34.24■■■■□ 3.07
CASC3-203ENST00000418132 SOGA1O94964 1423 aa34.21■■■■□ 3.07
CASC3-203ENST00000418132 FAM9AQ8IZU1 332 aaPredicted RBP34.2■■■■□ 3.07
CASC3-203ENST00000418132 TOPBP1Q92547 1522 aa34.18■■■■□ 3.06
CASC3-203ENST00000418132 EEA1Q15075 1411 aa34.15■■■■□ 3.06
CASC3-203ENST00000418132 URB2Q14146 1524 aaKnown RBP34.15■■■■□ 3.06
CASC3-203ENST00000418132 FGD5Q6ZNL6 1462 aa34.11■■■■□ 3.05
CASC3-203ENST00000418132 RUSC2Q8N2Y8 1516 aa34.1■■■■□ 3.05
CASC3-203ENST00000418132 MRC2Q9UBG0 1479 aa34.02■■■■□ 3.04
CASC3-203ENST00000418132 LOC105371045A0A1W2PR82 267 aa34.02■■■■□ 3.04
CASC3-203ENST00000418132 POLA1P09884 1462 aaPredicted RBP33.99■■■■□ 3.03
CASC3-203ENST00000418132 ERCC6Q03468 1493 aa33.96■■■■□ 3.03
CASC3-203ENST00000418132 CSRNP3Q8WYN3 585 aa33.94■■■■□ 3.02
CASC3-203ENST00000418132 KIF27Q86VH2 1401 aa33.88■■■■□ 3.01
CASC3-203ENST00000418132 WDR62O43379 1518 aa33.87■■■■□ 3.01
CASC3-203ENST00000418132 RAD54L2Q9Y4B4 1467 aa33.84■■■■□ 3.01
CASC3-203ENST00000418132 ABCA10Q8WWZ4 1543 aa33.83■■■■□ 3.01
CASC3-203ENST00000418132 CUX2O14529 1486 aa33.83■■■■□ 3.01
CASC3-203ENST00000418132 THOC2Q8NI27 1593 aaKnown RBP33.81■■■■□ 3
CASC3-203ENST00000418132 WDR97A6NE52 1622 aa33.75■■■□□ 2.99
CASC3-203ENST00000418132 KIF21BO75037 1637 aa33.72■■■□□ 2.99
CASC3-203ENST00000418132 TARBP1Q13395 1621 aaKnown RBP33.7■■■□□ 2.99
CASC3-203ENST00000418132 EHMT2Q96KQ7 1210 aa33.68■■■□□ 2.98
CASC3-203ENST00000418132 GOLGA3Q08378 1498 aa33.64■■■□□ 2.98
CASC3-203ENST00000418132 PRXQ9BXM0 1461 aa33.63■■■□□ 2.97
CASC3-203ENST00000418132 IGF1RP08069 1367 aa33.61■■■□□ 2.97
CASC3-203ENST00000418132 ABCA5Q8WWZ7 1642 aa33.58■■■□□ 2.97
CASC3-203ENST00000418132 IFT140Q96RY7 1462 aa33.58■■■□□ 2.97
CASC3-203ENST00000418132 ERICH3Q5RHP9 1530 aa33.54■■■□□ 2.96
CASC3-203ENST00000418132 RAPGEF2Q9Y4G8 1499 aa33.54■■■□□ 2.96
CASC3-203ENST00000418132 TDRD9Q8NDG6 1382 aaKnown RBP33.53■■■□□ 2.96
CASC3-203ENST00000418132 TNIKQ9UKE5 1360 aa33.5■■■□□ 2.95
CASC3-203ENST00000418132 GAPVD1Q14C86 1478 aa33.49■■■□□ 2.95
CASC3-203ENST00000418132 UBTFP17480 764 aaKnown RBP33.44■■■□□ 2.94
CASC3-203ENST00000418132 CARMIL1Q5VZK9 1371 aa33.43■■■□□ 2.94
CASC3-203ENST00000418132 CUL7Q14999 1698 aa33.4■■■□□ 2.94
CASC3-203ENST00000418132 ZNF608Q9ULD9 1512 aaPredicted RBP33.37■■■□□ 2.93
CASC3-203ENST00000418132 AQRO60306 1485 aaKnown RBP eCLIP33.36■■■□□ 2.932e-7■■■■□ 19.8
CASC3-203ENST00000418132 PBRM1Q86U86 1689 aa33.33■■■□□ 2.93
CASC3-203ENST00000418132 CEP162Q5TB80 1403 aa33.29■■■□□ 2.92
CASC3-203ENST00000418132 GRIN2BQ13224 1484 aa33.28■■■□□ 2.92
CASC3-203ENST00000418132 EIF4G3O43432 1585 aaKnown RBP33.27■■■□□ 2.92
CASC3-203ENST00000418132 ADAMTS12P58397 1594 aa33.14■■■□□ 2.9
CASC3-203ENST00000418132 FHAD1B1AJZ9 1412 aa33.14■■■□□ 2.9
CASC3-203ENST00000418132 CLIP1P30622 1438 aa33.08■■■□□ 2.89
CASC3-203ENST00000418132 SNAPC4Q5SXM2 1469 aa33.06■■■□□ 2.88
CASC3-203ENST00000418132 MAGI1Q96QZ7 1491 aaPredicted RBP33.04■■■□□ 2.88
CASC3-203ENST00000418132 CTTNBP2Q8WZ74 1663 aa32.98■■■□□ 2.87
CASC3-203ENST00000418132 RANGAP1P46060 587 aaPredicted RBP32.9■■■□□ 2.86
CASC3-203ENST00000418132 SYNJ2O15056 1496 aa32.9■■■□□ 2.86
CASC3-203ENST00000418132 GRIN2AQ12879 1464 aa32.87■■■□□ 2.85
Retrieved 100 of 20,778 RNA–protein pairs in 164.9 ms