RNA–Protein interactions for RNA: ENST00000413951.5

SF1-207, Transcript of splicing factor 1, humanhuman

TSL 2

Gene SF1, Length 623 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF1-207ENST00000413951 NISCHQ9Y2I1 1504 aa41.44■■■■■ 4.22
SF1-207ENST00000413951 CCDC180Q9P1Z9 1646 aa37.17■■■■□ 3.54
SF1-207ENST00000413951 ABCC9O60706 1549 aa37.06■■■■□ 3.52
SF1-207ENST00000413951 RB1CC1Q8TDY2 1594 aa35.4■■■■□ 3.26
SF1-207ENST00000413951 NACADO15069 1562 aa35.19■■■■□ 3.22
SF1-207ENST00000413951 DCAF8L2P0C7V8 631 aa35■■■■□ 3.19
SF1-207ENST00000413951 MYO15BQ96JP2 1530 aa34.76■■■■□ 3.16
SF1-207ENST00000413951 DNAJC5BQ9UF47 199 aa34.65■■■■□ 3.14
SF1-207ENST00000413951 PABPN1Q86U42 306 aaKnown RBP eCLIP34.52■■■■□ 3.12
SF1-207ENST00000413951 UNC13AQ9UPW8 1703 aa34.37■■■■□ 3.09
SF1-207ENST00000413951 ZCCHC6Q5VYS8 1495 aaKnown RBP34.33■■■■□ 3.09
SF1-207ENST00000413951 DCAF1Q9Y4B6 1507 aa34.3■■■■□ 3.08
SF1-207ENST00000413951 BICRAQ9NZM4 1560 aa34.22■■■■□ 3.07
SF1-207ENST00000413951 SHROOM4Q9ULL8 1493 aa34.01■■■■□ 3.04
SF1-207ENST00000413951 SCRIBQ14160 1630 aa33.78■■■■□ 3
SF1-207ENST00000413951 CC2D2AQ9P2K1 1620 aa33.48■■■□□ 2.95
SF1-207ENST00000413951 EIF4G1Q04637 1599 aaKnown RBP33.45■■■□□ 2.95
SF1-207ENST00000413951 CECR2Q9BXF3 1484 aa33.44■■■□□ 2.94
SF1-207ENST00000413951 NCAPD3P42695 1498 aa32.48■■■□□ 2.79
SF1-207ENST00000413951 ATAD2BQ9ULI0 1458 aa32.34■■■□□ 2.77
SF1-207ENST00000413951 SMARCA2P51531 1590 aa32.32■■■□□ 2.76
SF1-207ENST00000413951 SMARCA4P51532 1647 aa32.27■■■□□ 2.76
SF1-207ENST00000413951 HMGXB3Q12766 1538 aa32.22■■■□□ 2.75
SF1-207ENST00000413951 BAZ1AQ9NRL2 1556 aaPredicted RBP32.21■■■□□ 2.75
SF1-207ENST00000413951 ERCC6Q03468 1493 aa32.1■■■□□ 2.73
SF1-207ENST00000413951 CUX2O14529 1486 aa32.05■■■□□ 2.72
SF1-207ENST00000413951 BAZ1BQ9UIG0 1483 aaKnown RBP32.05■■■□□ 2.72
SF1-207ENST00000413951 PEG3Q9GZU2 1588 aa32.01■■■□□ 2.71
SF1-207ENST00000413951 DNAJC5Q9H3Z4 198 aa31.96■■■□□ 2.71
SF1-207ENST00000413951 MROH2BQ7Z745 1585 aa31.85■■■□□ 2.69
SF1-207ENST00000413951 NESP48681 1621 aa31.79■■■□□ 2.68
SF1-207ENST00000413951 LAMC3Q9Y6N6 1575 aa31.73■■■□□ 2.67
SF1-207ENST00000413951 PDS5BQ9NTI5 1447 aa31.62■■■□□ 2.65
SF1-207ENST00000413951 CADPSQ9ULU8 1353 aa31.5■■■□□ 2.63
SF1-207ENST00000413951 THOC2Q8NI27 1593 aaKnown RBP31.49■■■□□ 2.63
SF1-207ENST00000413951 WIZO95785 1651 aa31.44■■■□□ 2.62
SF1-207ENST00000413951 KIF21AQ7Z4S6 1674 aa31.37■■■□□ 2.61
SF1-207ENST00000413951 RSF1Q96T23 1441 aaPredicted RBP31.27■■■□□ 2.6
SF1-207ENST00000413951 MRC2Q9UBG0 1479 aa31.26■■■□□ 2.59
SF1-207ENST00000413951 CEP164Q9UPV0 1460 aa31.15■■■□□ 2.58
SF1-207ENST00000413951 WDR62O43379 1518 aa31.15■■■□□ 2.58
SF1-207ENST00000413951 TOP2AP11388 1531 aaKnown RBP31.15■■■□□ 2.58
SF1-207ENST00000413951 CFTRP13569 1480 aa31.13■■■□□ 2.57
SF1-207ENST00000413951 FANCD2Q9BXW9 1451 aa31.1■■■□□ 2.57
SF1-207ENST00000413951 CCDC88BA6NC98 1476 aa30.77■■■□□ 2.52
SF1-207ENST00000413951 URB2Q14146 1524 aaKnown RBP30.77■■■□□ 2.52
SF1-207ENST00000413951 PRDM2Q13029 1718 aa30.72■■■□□ 2.51
SF1-207ENST00000413951 OSCARQ8IYS5 282 aa30.64■■■□□ 2.5
SF1-207ENST00000413951 ABCC8Q09428 1581 aa30.59■■■□□ 2.49
SF1-207ENST00000413951 IFT140Q96RY7 1462 aa30.56■■■□□ 2.48
SF1-207ENST00000413951 TRIM41Q8WV44 630 aa30.53■■■□□ 2.48
SF1-207ENST00000413951 TOPBP1Q92547 1522 aa30.49■■■□□ 2.47
SF1-207ENST00000413951 DNMBPQ6XZF7 1577 aa30.4■■■□□ 2.46
SF1-207ENST00000413951 ZNF608Q9ULD9 1512 aaPredicted RBP30.37■■■□□ 2.45
SF1-207ENST00000413951 EIF4G3O43432 1585 aaKnown RBP30.22■■■□□ 2.43
SF1-207ENST00000413951 POLA1P09884 1462 aaPredicted RBP30.18■■■□□ 2.42
SF1-207ENST00000413951 TARBP1Q13395 1621 aaKnown RBP30.17■■■□□ 2.42
SF1-207ENST00000413951 AQRO60306 1485 aaKnown RBP eCLIP30.13■■■□□ 2.414e-11■■■■□ 19.9
SF1-207ENST00000413951 SOGA1O94964 1423 aa30.11■■■□□ 2.41
SF1-207ENST00000413951 RIMBP3CA6NJZ7 1639 aa30.06■■■□□ 2.4
SF1-207ENST00000413951 RIMBP3BA6NNM3 1639 aa30.06■■■□□ 2.4
SF1-207ENST00000413951 RIMBP3Q9UFD9 1639 aa30.06■■■□□ 2.4
SF1-207ENST00000413951 WDR97A6NE52 1622 aa30.03■■■□□ 2.4
SF1-207ENST00000413951 RAD54L2Q9Y4B4 1467 aa30.02■■■□□ 2.4
SF1-207ENST00000413951 FBLN2P98095 1184 aa30.02■■■□□ 2.4
SF1-207ENST00000413951 ARHGEF11O15085 1522 aa30.01■■■□□ 2.4
SF1-207ENST00000413951 FGD5Q6ZNL6 1462 aa29.99■■■□□ 2.39
SF1-207ENST00000413951 TDRD9Q8NDG6 1382 aaKnown RBP29.98■■■□□ 2.39
SF1-207ENST00000413951 SUPT5HO00267 1087 aaKnown RBP29.94■■■□□ 2.38
SF1-207ENST00000413951 CHD1O14646 1710 aa29.93■■■□□ 2.38
SF1-207ENST00000413951 CUX1P39880 1505 aa29.93■■■□□ 2.38
SF1-207ENST00000413951 CHMP7Q8WUX9 453 aaPredicted RBP29.86■■■□□ 2.37
SF1-207ENST00000413951 MAGI1Q96QZ7 1491 aaPredicted RBP29.86■■■□□ 2.37
SF1-207ENST00000413951 CYB5RLQ6IPT4 315 aa29.85■■■□□ 2.37
SF1-207ENST00000413951 GRIN2BQ13224 1484 aa29.85■■■□□ 2.37
SF1-207ENST00000413951 SNAPC4Q5SXM2 1469 aa29.85■■■□□ 2.37
SF1-207ENST00000413951 SYNJ1O43426 1573 aa29.74■■■□□ 2.35
SF1-207ENST00000413951 SYNJ2O15056 1496 aa29.74■■■□□ 2.35
SF1-207ENST00000413951 GAPVD1Q14C86 1478 aa29.73■■■□□ 2.35
SF1-207ENST00000413951 ABCA10Q8WWZ4 1543 aa29.7■■■□□ 2.34
SF1-207ENST00000413951 ARAP1Q96P48 1450 aa29.69■■■□□ 2.34
SF1-207ENST00000413951 CLASP1Q7Z460 1538 aa29.66■■■□□ 2.34
SF1-207ENST00000413951 WRNQ14191 1432 aaPredicted RBP eCLIP29.65■■■□□ 2.34
SF1-207ENST00000413951 PBRM1Q86U86 1689 aa29.6■■■□□ 2.33
SF1-207ENST00000413951 ABCA5Q8WWZ7 1642 aa29.58■■■□□ 2.33
SF1-207ENST00000413951 TRHP20396 242 aaPredicted RBP29.54■■■□□ 2.32
SF1-207ENST00000413951 TOP2BQ02880 1626 aa29.52■■■□□ 2.32
SF1-207ENST00000413951 BIVM-ERCC5R4GMW8 1640 aa29.49■■■□□ 2.31
SF1-207ENST00000413951 GRIN2AQ12879 1464 aa29.42■■■□□ 2.3
SF1-207ENST00000413951 FHAD1B1AJZ9 1412 aa29.38■■■□□ 2.29
SF1-207ENST00000413951 ADAMTS12P58397 1594 aa29.36■■■□□ 2.29
SF1-207ENST00000413951 ERICH3Q5RHP9 1530 aa29.35■■■□□ 2.29
SF1-207ENST00000413951 NUP160Q12769 1436 aa29.33■■■□□ 2.29
SF1-207ENST00000413951 CEP170Q5SW79 1584 aa29.23■■■□□ 2.27
SF1-207ENST00000413951 SHROOM2Q13796 1616 aa29.14■■■□□ 2.26
SF1-207ENST00000413951 ERCC6L2Q5T890 1561 aa29.09■■■□□ 2.25
SF1-207ENST00000413951 JPH4Q96JJ6 628 aa29.09■■■□□ 2.25
SF1-207ENST00000413951 KIF27Q86VH2 1401 aa29.05■■■□□ 2.24
SF1-207ENST00000413951 PRG4Q92954 1404 aaPredicted RBP29.05■■■□□ 2.24
SF1-207ENST00000413951 IGF1RP08069 1367 aa28.97■■■□□ 2.23
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms