RNA–Protein interactions for RNA: ENST00000583080.1

SREBF1-221, Transcript of sterol regulatory element binding transcription factor 1, humanhuman

TSL 5

Gene SREBF1, Length 482 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SREBF1-221ENST00000583080 NISCHQ9Y2I1 1504 aa41.08■■■■■ 4.17
SREBF1-221ENST00000583080 ABCC9O60706 1549 aa37.24■■■■□ 3.55
SREBF1-221ENST00000583080 CCDC180Q9P1Z9 1646 aa36.98■■■■□ 3.51
SREBF1-221ENST00000583080 RB1CC1Q8TDY2 1594 aa35.3■■■■□ 3.24
SREBF1-221ENST00000583080 DNAJC5BQ9UF47 199 aa35.13■■■■□ 3.21
SREBF1-221ENST00000583080 NACADO15069 1562 aa34.99■■■■□ 3.19
SREBF1-221ENST00000583080 DCAF8L2P0C7V8 631 aa34.7■■■■□ 3.15
SREBF1-221ENST00000583080 PABPN1Q86U42 306 aaKnown RBP eCLIP34.6■■■■□ 3.13
SREBF1-221ENST00000583080 UNC13AQ9UPW8 1703 aa34.56■■■■□ 3.12
SREBF1-221ENST00000583080 MYO15BQ96JP2 1530 aa34.4■■■■□ 3.1
SREBF1-221ENST00000583080 BICRAQ9NZM4 1560 aa34.34■■■■□ 3.09
SREBF1-221ENST00000583080 ZCCHC6Q5VYS8 1495 aaKnown RBP34.03■■■■□ 3.04
SREBF1-221ENST00000583080 DCAF1Q9Y4B6 1507 aa33.89■■■■□ 3.02
SREBF1-221ENST00000583080 SHROOM4Q9ULL8 1493 aa33.77■■■■□ 3
SREBF1-221ENST00000583080 SCRIBQ14160 1630 aa33.73■■■□□ 2.99
SREBF1-221ENST00000583080 CC2D2AQ9P2K1 1620 aa33.63■■■□□ 2.97
SREBF1-221ENST00000583080 CECR2Q9BXF3 1484 aa33.55■■■□□ 2.96
SREBF1-221ENST00000583080 EIF4G1Q04637 1599 aaKnown RBP33.5■■■□□ 2.95
SREBF1-221ENST00000583080 DNAJC5Q9H3Z4 198 aa32.36■■■□□ 2.77
SREBF1-221ENST00000583080 NCAPD3P42695 1498 aa32.29■■■□□ 2.76
SREBF1-221ENST00000583080 ATAD2BQ9ULI0 1458 aa32.2■■■□□ 2.75
SREBF1-221ENST00000583080 CUX2O14529 1486 aa32.15■■■□□ 2.74
SREBF1-221ENST00000583080 SMARCA4P51532 1647 aa32.13■■■□□ 2.73
SREBF1-221ENST00000583080 ERCC6Q03468 1493 aa32.13■■■□□ 2.73
SREBF1-221ENST00000583080 SMARCA2P51531 1590 aa32.07■■■□□ 2.72
SREBF1-221ENST00000583080 HMGXB3Q12766 1538 aa32.07■■■□□ 2.72
SREBF1-221ENST00000583080 NESP48681 1621 aa31.94■■■□□ 2.7
SREBF1-221ENST00000583080 BAZ1AQ9NRL2 1556 aaPredicted RBP31.9■■■□□ 2.7
SREBF1-221ENST00000583080 BAZ1BQ9UIG0 1483 aaKnown RBP31.87■■■□□ 2.69
SREBF1-221ENST00000583080 PEG3Q9GZU2 1588 aa31.8■■■□□ 2.68
SREBF1-221ENST00000583080 MROH2BQ7Z745 1585 aa31.68■■■□□ 2.66
SREBF1-221ENST00000583080 THOC2Q8NI27 1593 aaKnown RBP31.68■■■□□ 2.66
SREBF1-221ENST00000583080 LAMC3Q9Y6N6 1575 aa31.62■■■□□ 2.65
SREBF1-221ENST00000583080 KIF21AQ7Z4S6 1674 aa31.53■■■□□ 2.64
SREBF1-221ENST00000583080 PDS5BQ9NTI5 1447 aa31.41■■■□□ 2.62
SREBF1-221ENST00000583080 WIZO95785 1651 aa31.3■■■□□ 2.6
SREBF1-221ENST00000583080 CADPSQ9ULU8 1353 aa31.3■■■□□ 2.6
SREBF1-221ENST00000583080 MRC2Q9UBG0 1479 aa31.21■■■□□ 2.59
SREBF1-221ENST00000583080 WDR62O43379 1518 aa31.17■■■□□ 2.58
SREBF1-221ENST00000583080 CEP164Q9UPV0 1460 aa31.03■■■□□ 2.56
SREBF1-221ENST00000583080 FANCD2Q9BXW9 1451 aa30.98■■■□□ 2.55
SREBF1-221ENST00000583080 CFTRP13569 1480 aa30.92■■■□□ 2.54
SREBF1-221ENST00000583080 RSF1Q96T23 1441 aaPredicted RBP30.91■■■□□ 2.54
SREBF1-221ENST00000583080 TRIM41Q8WV44 630 aa30.88■■■□□ 2.53
SREBF1-221ENST00000583080 TOP2AP11388 1531 aaKnown RBP30.88■■■□□ 2.53
SREBF1-221ENST00000583080 URB2Q14146 1524 aaKnown RBP30.78■■■□□ 2.52
SREBF1-221ENST00000583080 PRDM2Q13029 1718 aa30.61■■■□□ 2.49
SREBF1-221ENST00000583080 OSCARQ8IYS5 282 aa30.56■■■□□ 2.48
SREBF1-221ENST00000583080 CCDC88BA6NC98 1476 aa30.5■■■□□ 2.47
SREBF1-221ENST00000583080 ZNF608Q9ULD9 1512 aaPredicted RBP30.44■■■□□ 2.46
SREBF1-221ENST00000583080 IFT140Q96RY7 1462 aa30.4■■■□□ 2.46
SREBF1-221ENST00000583080 TOPBP1Q92547 1522 aa30.38■■■□□ 2.45
SREBF1-221ENST00000583080 RIMBP3CA6NJZ7 1639 aa30.32■■■□□ 2.44
SREBF1-221ENST00000583080 RIMBP3BA6NNM3 1639 aa30.32■■■□□ 2.44
SREBF1-221ENST00000583080 RIMBP3Q9UFD9 1639 aa30.32■■■□□ 2.44
SREBF1-221ENST00000583080 EIF4G3O43432 1585 aaKnown RBP30.27■■■□□ 2.44
SREBF1-221ENST00000583080 DNMBPQ6XZF7 1577 aa30.24■■■□□ 2.43
SREBF1-221ENST00000583080 ABCC8Q09428 1581 aa30.2■■■□□ 2.43
SREBF1-221ENST00000583080 ARHGEF11O15085 1522 aa30.19■■■□□ 2.42
SREBF1-221ENST00000583080 TARBP1Q13395 1621 aaKnown RBP30.14■■■□□ 2.42
SREBF1-221ENST00000583080 AQRO60306 1485 aaKnown RBP eCLIP30.1■■■□□ 2.415e-21■■■■■ 47.6
SREBF1-221ENST00000583080 CHD1O14646 1710 aa30.08■■■□□ 2.41
SREBF1-221ENST00000583080 POLA1P09884 1462 aaPredicted RBP30.06■■■□□ 2.4
SREBF1-221ENST00000583080 RAD54L2Q9Y4B4 1467 aa29.96■■■□□ 2.39
SREBF1-221ENST00000583080 CYB5RLQ6IPT4 315 aa29.9■■■□□ 2.38
SREBF1-221ENST00000583080 ARAP1Q96P48 1450 aa29.9■■■□□ 2.38
SREBF1-221ENST00000583080 FBLN2P98095 1184 aa29.89■■■□□ 2.38
SREBF1-221ENST00000583080 TDRD9Q8NDG6 1382 aaKnown RBP29.87■■■□□ 2.37
SREBF1-221ENST00000583080 SOGA1O94964 1423 aa29.86■■■□□ 2.37
SREBF1-221ENST00000583080 FGD5Q6ZNL6 1462 aa29.84■■■□□ 2.37
SREBF1-221ENST00000583080 SNAPC4Q5SXM2 1469 aa29.8■■■□□ 2.36
SREBF1-221ENST00000583080 CUX1P39880 1505 aa29.8■■■□□ 2.36
SREBF1-221ENST00000583080 WDR97A6NE52 1622 aa29.76■■■□□ 2.35
SREBF1-221ENST00000583080 CLASP1Q7Z460 1538 aa29.73■■■□□ 2.35
SREBF1-221ENST00000583080 MAGI1Q96QZ7 1491 aaPredicted RBP29.68■■■□□ 2.34
SREBF1-221ENST00000583080 GRIN2BQ13224 1484 aa29.65■■■□□ 2.34
SREBF1-221ENST00000583080 SYNJ1O43426 1573 aa29.64■■■□□ 2.34
SREBF1-221ENST00000583080 TRHP20396 242 aaPredicted RBP29.64■■■□□ 2.34
SREBF1-221ENST00000583080 CHMP7Q8WUX9 453 aaPredicted RBP29.61■■■□□ 2.33
SREBF1-221ENST00000583080 SYNJ2O15056 1496 aa29.59■■■□□ 2.33
SREBF1-221ENST00000583080 PBRM1Q86U86 1689 aa29.57■■■□□ 2.32
SREBF1-221ENST00000583080 GAPVD1Q14C86 1478 aa29.52■■■□□ 2.32
SREBF1-221ENST00000583080 ABCA5Q8WWZ7 1642 aa29.49■■■□□ 2.31
SREBF1-221ENST00000583080 ABCA10Q8WWZ4 1543 aa29.47■■■□□ 2.31
SREBF1-221ENST00000583080 SUPT5HO00267 1087 aaKnown RBP29.32■■■□□ 2.28
SREBF1-221ENST00000583080 ADAMTS12P58397 1594 aa29.3■■■□□ 2.28
SREBF1-221ENST00000583080 GRIN2AQ12879 1464 aa29.29■■■□□ 2.28
SREBF1-221ENST00000583080 ERCC6L2Q5T890 1561 aa29.28■■■□□ 2.28
SREBF1-221ENST00000583080 WRNQ14191 1432 aaPredicted RBP eCLIP29.26■■■□□ 2.27
SREBF1-221ENST00000583080 CEP170Q5SW79 1584 aa29.24■■■□□ 2.27
SREBF1-221ENST00000583080 BIVM-ERCC5R4GMW8 1640 aa29.23■■■□□ 2.27
SREBF1-221ENST00000583080 TOP2BQ02880 1626 aa29.22■■■□□ 2.27
SREBF1-221ENST00000583080 NUP160Q12769 1436 aa29.2■■■□□ 2.27
SREBF1-221ENST00000583080 SHROOM2Q13796 1616 aa29.12■■■□□ 2.25
SREBF1-221ENST00000583080 FHAD1B1AJZ9 1412 aa29.12■■■□□ 2.25
SREBF1-221ENST00000583080 ERICH3Q5RHP9 1530 aa29.08■■■□□ 2.25
SREBF1-221ENST00000583080 PRG4Q92954 1404 aaPredicted RBP28.93■■■□□ 2.22
SREBF1-221ENST00000583080 AEBP2Q6ZN18 517 aaPredicted RBP28.91■■■□□ 2.22
SREBF1-221ENST00000583080 RUSC2Q8N2Y8 1516 aa28.89■■■□□ 2.21
SREBF1-221ENST00000583080 KIF13AQ9H1H9 1805 aa28.87■■■□□ 2.21
Retrieved 100 of 20,778 RNA–protein pairs in 9.7 ms