RNA–Protein interactions for RNA: ENST00000581849.1

CASC3-207, Transcript of CASC3, exon junction complex subunit, humanhuman

TSL 2

Gene CASC3, Length 580 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CASC3-207ENST00000581849 NISCHQ9Y2I1 1504 aa55.51■■■■■ 6.48
CASC3-207ENST00000581849 CCDC180Q9P1Z9 1646 aa49.73■■■■■ 5.55
CASC3-207ENST00000581849 ABCC9O60706 1549 aa49.13■■■■■ 5.45
CASC3-207ENST00000581849 RB1CC1Q8TDY2 1594 aa47.09■■■■■ 5.13
CASC3-207ENST00000581849 NACADO15069 1562 aa46.9■■■■■ 5.1
CASC3-207ENST00000581849 MYO15BQ96JP2 1530 aa46.48■■■■■ 5.03
CASC3-207ENST00000581849 DCAF8L2P0C7V8 631 aa46.46■■■■■ 5.03
CASC3-207ENST00000581849 ZCCHC6Q5VYS8 1495 aaKnown RBP46.12■■■■■ 4.97
CASC3-207ENST00000581849 DCAF1Q9Y4B6 1507 aa46■■■■■ 4.95
CASC3-207ENST00000581849 UNC13AQ9UPW8 1703 aa45.96■■■■■ 4.95
CASC3-207ENST00000581849 PABPN1Q86U42 306 aaKnown RBP eCLIP45.73■■■■■ 4.91
CASC3-207ENST00000581849 DNAJC5BQ9UF47 199 aa45.65■■■■■ 4.9
CASC3-207ENST00000581849 BICRAQ9NZM4 1560 aa45.65■■■■■ 4.9
CASC3-207ENST00000581849 SHROOM4Q9ULL8 1493 aa45.27■■■■■ 4.84
CASC3-207ENST00000581849 SCRIBQ14160 1630 aa45.17■■■■■ 4.82
CASC3-207ENST00000581849 EIF4G1Q04637 1599 aaKnown RBP44.51■■■■■ 4.72
CASC3-207ENST00000581849 CC2D2AQ9P2K1 1620 aa44.47■■■■■ 4.71
CASC3-207ENST00000581849 CECR2Q9BXF3 1484 aa44.27■■■■■ 4.68
CASC3-207ENST00000581849 NCAPD3P42695 1498 aa43.27■■■■■ 4.52
CASC3-207ENST00000581849 SMARCA4P51532 1647 aa43.22■■■■■ 4.51
CASC3-207ENST00000581849 ATAD2BQ9ULI0 1458 aa43.15■■■■■ 4.5
CASC3-207ENST00000581849 SMARCA2P51531 1590 aa43.11■■■■■ 4.49
CASC3-207ENST00000581849 BAZ1AQ9NRL2 1556 aaPredicted RBP43.11■■■■■ 4.49
CASC3-207ENST00000581849 HMGXB3Q12766 1538 aa43.02■■■■■ 4.48
CASC3-207ENST00000581849 PEG3Q9GZU2 1588 aa42.88■■■■■ 4.45
CASC3-207ENST00000581849 BAZ1BQ9UIG0 1483 aaKnown RBP42.74■■■■■ 4.43
CASC3-207ENST00000581849 MROH2BQ7Z745 1585 aa42.72■■■■■ 4.43
CASC3-207ENST00000581849 ERCC6Q03468 1493 aa42.43■■■■■ 4.38
CASC3-207ENST00000581849 CUX2O14529 1486 aa42.33■■■■■ 4.37
CASC3-207ENST00000581849 NESP48681 1621 aa42.31■■■■■ 4.36
CASC3-207ENST00000581849 LAMC3Q9Y6N6 1575 aa42.24■■■■■ 4.35
CASC3-207ENST00000581849 WIZO95785 1651 aa42.21■■■■■ 4.35
CASC3-207ENST00000581849 RSF1Q96T23 1441 aaPredicted RBP42.01■■■■■ 4.32
CASC3-207ENST00000581849 PDS5BQ9NTI5 1447 aa41.95■■■■■ 4.31
CASC3-207ENST00000581849 CADPSQ9ULU8 1353 aa41.94■■■■■ 4.3
CASC3-207ENST00000581849 THOC2Q8NI27 1593 aaKnown RBP41.91■■■■■ 4.3
CASC3-207ENST00000581849 KIF21AQ7Z4S6 1674 aa41.83■■■■■ 4.29
CASC3-207ENST00000581849 TOP2AP11388 1531 aaKnown RBP41.79■■■■■ 4.28
CASC3-207ENST00000581849 DNAJC5Q9H3Z4 198 aa41.73■■■■■ 4.27
CASC3-207ENST00000581849 CFTRP13569 1480 aa41.56■■■■■ 4.24
CASC3-207ENST00000581849 MRC2Q9UBG0 1479 aa41.55■■■■■ 4.24
CASC3-207ENST00000581849 CEP164Q9UPV0 1460 aa41.47■■■■■ 4.23
CASC3-207ENST00000581849 WDR62O43379 1518 aa41.46■■■■■ 4.23
CASC3-207ENST00000581849 FANCD2Q9BXW9 1451 aa41.43■■■■■ 4.22
CASC3-207ENST00000581849 CCDC88BA6NC98 1476 aa41.26■■■■■ 4.2
CASC3-207ENST00000581849 PRDM2Q13029 1718 aa41.22■■■■■ 4.19
CASC3-207ENST00000581849 URB2Q14146 1524 aaKnown RBP41.04■■■■■ 4.16
CASC3-207ENST00000581849 ABCC8Q09428 1581 aa40.74■■■■■ 4.11
CASC3-207ENST00000581849 TOPBP1Q92547 1522 aa40.7■■■■■ 4.11
CASC3-207ENST00000581849 IFT140Q96RY7 1462 aa40.64■■■■■ 4.1
CASC3-207ENST00000581849 DNMBPQ6XZF7 1577 aa40.63■■■■■ 4.09
CASC3-207ENST00000581849 ZNF608Q9ULD9 1512 aaPredicted RBP40.43■■■■■ 4.06
CASC3-207ENST00000581849 OSCARQ8IYS5 282 aa40.37■■■■■ 4.05
CASC3-207ENST00000581849 TARBP1Q13395 1621 aaKnown RBP40.33■■■■■ 4.05
CASC3-207ENST00000581849 POLA1P09884 1462 aaPredicted RBP40.31■■■■■ 4.04
CASC3-207ENST00000581849 EIF4G3O43432 1585 aaKnown RBP40.3■■■■■ 4.04
CASC3-207ENST00000581849 SUPT5HO00267 1087 aaKnown RBP40.29■■■■■ 4.04
CASC3-207ENST00000581849 CUX1P39880 1505 aa40.12■■■■■ 4.01
CASC3-207ENST00000581849 SOGA1O94964 1423 aa40.12■■■■■ 4.01
CASC3-207ENST00000581849 AQRO60306 1485 aaKnown RBP eCLIP40.12■■■■■ 4.012e-7■■■■□ 19.8
CASC3-207ENST00000581849 FGD5Q6ZNL6 1462 aa40.1■■■■■ 4.01
CASC3-207ENST00000581849 WDR97A6NE52 1622 aa40.09■■■■■ 4.01
CASC3-207ENST00000581849 RAD54L2Q9Y4B4 1467 aa40.07■■■■■ 4.01
CASC3-207ENST00000581849 TRIM41Q8WV44 630 aa39.93■■■■□ 3.98
CASC3-207ENST00000581849 TDRD9Q8NDG6 1382 aaKnown RBP39.92■■■■□ 3.98
CASC3-207ENST00000581849 CHD1O14646 1710 aa39.9■■■■□ 3.98
CASC3-207ENST00000581849 RIMBP3CA6NJZ7 1639 aa39.8■■■■□ 3.96
CASC3-207ENST00000581849 RIMBP3BA6NNM3 1639 aa39.8■■■■□ 3.96
CASC3-207ENST00000581849 RIMBP3Q9UFD9 1639 aa39.8■■■■□ 3.96
CASC3-207ENST00000581849 GRIN2BQ13224 1484 aa39.76■■■■□ 3.96
CASC3-207ENST00000581849 SNAPC4Q5SXM2 1469 aa39.76■■■■□ 3.96
CASC3-207ENST00000581849 MAGI1Q96QZ7 1491 aaPredicted RBP39.76■■■■□ 3.96
CASC3-207ENST00000581849 ARHGEF11O15085 1522 aa39.73■■■■□ 3.95
CASC3-207ENST00000581849 ABCA10Q8WWZ4 1543 aa39.73■■■■□ 3.95
CASC3-207ENST00000581849 FBLN2P98095 1184 aa39.7■■■■□ 3.95
CASC3-207ENST00000581849 BIVM-ERCC5R4GMW8 1640 aa39.66■■■■□ 3.94
CASC3-207ENST00000581849 GAPVD1Q14C86 1478 aa39.66■■■■□ 3.94
CASC3-207ENST00000581849 TOP2BQ02880 1626 aa39.65■■■■□ 3.94
CASC3-207ENST00000581849 WRNQ14191 1432 aaPredicted RBP eCLIP39.64■■■■□ 3.94
CASC3-207ENST00000581849 ABCA5Q8WWZ7 1642 aa39.63■■■■□ 3.93
CASC3-207ENST00000581849 PBRM1Q86U86 1689 aa39.62■■■■□ 3.93
CASC3-207ENST00000581849 SYNJ2O15056 1496 aa39.6■■■■□ 3.93
CASC3-207ENST00000581849 CHMP7Q8WUX9 453 aaPredicted RBP39.56■■■■□ 3.92
CASC3-207ENST00000581849 SYNJ1O43426 1573 aa39.55■■■■□ 3.92
CASC3-207ENST00000581849 CLASP1Q7Z460 1538 aa39.5■■■■□ 3.91
CASC3-207ENST00000581849 ARAP1Q96P48 1450 aa39.36■■■■□ 3.89
CASC3-207ENST00000581849 CYB5RLQ6IPT4 315 aa39.32■■■■□ 3.89
CASC3-207ENST00000581849 ADAMTS12P58397 1594 aa39.29■■■■□ 3.88
CASC3-207ENST00000581849 ERICH3Q5RHP9 1530 aa39.26■■■■□ 3.88
CASC3-207ENST00000581849 GRIN2AQ12879 1464 aa39.24■■■■□ 3.87
CASC3-207ENST00000581849 FHAD1B1AJZ9 1412 aa39.2■■■■□ 3.87
CASC3-207ENST00000581849 NUP160Q12769 1436 aa39.13■■■■□ 3.85
CASC3-207ENST00000581849 CEP170Q5SW79 1584 aa39.05■■■■□ 3.84
CASC3-207ENST00000581849 SHROOM2Q13796 1616 aa38.92■■■■□ 3.82
CASC3-207ENST00000581849 KIF27Q86VH2 1401 aa38.88■■■■□ 3.81
CASC3-207ENST00000581849 ERCC6L2Q5T890 1561 aa38.81■■■■□ 3.8
CASC3-207ENST00000581849 IGF1RP08069 1367 aa38.78■■■■□ 3.8
CASC3-207ENST00000581849 CUL7Q14999 1698 aa38.78■■■■□ 3.8
CASC3-207ENST00000581849 RUSC2Q8N2Y8 1516 aa38.73■■■■□ 3.79
CASC3-207ENST00000581849 TRHP20396 242 aaPredicted RBP38.72■■■■□ 3.79
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms