RNA–Protein interactions for RNA: ENST00000583649.1

CASC3-208, Transcript of CASC3, exon junction complex subunit, humanhuman

TSL 3

Gene CASC3, Length 577 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CASC3-208ENST00000583649 NISCHQ9Y2I1 1504 aa28.33■■■□□ 2.13
CASC3-208ENST00000583649 ABCC9O60706 1549 aa26.28■■□□□ 1.8
CASC3-208ENST00000583649 CCDC180Q9P1Z9 1646 aa25.7■■□□□ 1.7
CASC3-208ENST00000583649 DNAJC5BQ9UF47 199 aa25.09■■□□□ 1.61
CASC3-208ENST00000583649 RB1CC1Q8TDY2 1594 aa24.83■■□□□ 1.57
CASC3-208ENST00000583649 NACADO15069 1562 aa24.5■■□□□ 1.51
CASC3-208ENST00000583649 PABPN1Q86U42 306 aaKnown RBP eCLIP24.39■■□□□ 1.49
CASC3-208ENST00000583649 DCAF8L2P0C7V8 631 aa24.34■■□□□ 1.49
CASC3-208ENST00000583649 UNC13AQ9UPW8 1703 aa24.03■■□□□ 1.44
CASC3-208ENST00000583649 MYO15BQ96JP2 1530 aa23.96■■□□□ 1.43
CASC3-208ENST00000583649 BICRAQ9NZM4 1560 aa23.94■■□□□ 1.42
CASC3-208ENST00000583649 CECR2Q9BXF3 1484 aa23.79■■□□□ 1.4
CASC3-208ENST00000583649 SHROOM4Q9ULL8 1493 aa23.79■■□□□ 1.4
CASC3-208ENST00000583649 CC2D2AQ9P2K1 1620 aa23.69■■□□□ 1.38
CASC3-208ENST00000583649 DNAJC5Q9H3Z4 198 aa23.66■■□□□ 1.38
CASC3-208ENST00000583649 EIF4G1Q04637 1599 aaKnown RBP23.5■■□□□ 1.35
CASC3-208ENST00000583649 DCAF1Q9Y4B6 1507 aa23.41■■□□□ 1.34
CASC3-208ENST00000583649 SCRIBQ14160 1630 aa23.33■■□□□ 1.33
CASC3-208ENST00000583649 ZCCHC6Q5VYS8 1495 aaKnown RBP23.33■■□□□ 1.33
CASC3-208ENST00000583649 CUX2O14529 1486 aa22.99■■□□□ 1.27
CASC3-208ENST00000583649 ERCC6Q03468 1493 aa22.86■■□□□ 1.25
CASC3-208ENST00000583649 NCAPD3P42695 1498 aa22.6■■□□□ 1.21
CASC3-208ENST00000583649 ATAD2BQ9ULI0 1458 aa22.41■■□□□ 1.18
CASC3-208ENST00000583649 TRIM41Q8WV44 630 aa22.4■■□□□ 1.18
CASC3-208ENST00000583649 SMARCA2P51531 1590 aa22.4■■□□□ 1.18
CASC3-208ENST00000583649 HMGXB3Q12766 1538 aa22.36■■□□□ 1.17
CASC3-208ENST00000583649 NESP48681 1621 aa22.33■■□□□ 1.17
CASC3-208ENST00000583649 THOC2Q8NI27 1593 aaKnown RBP22.23■■□□□ 1.15
CASC3-208ENST00000583649 BAZ1BQ9UIG0 1483 aaKnown RBP22.22■■□□□ 1.15
CASC3-208ENST00000583649 LAMC3Q9Y6N6 1575 aa22.21■■□□□ 1.15
CASC3-208ENST00000583649 SMARCA4P51532 1647 aa22.2■■□□□ 1.15
CASC3-208ENST00000583649 PDS5BQ9NTI5 1447 aa22.19■■□□□ 1.14
CASC3-208ENST00000583649 BAZ1AQ9NRL2 1556 aaPredicted RBP22.09■■□□□ 1.13
CASC3-208ENST00000583649 KIF21AQ7Z4S6 1674 aa22.01■■□□□ 1.11
CASC3-208ENST00000583649 PEG3Q9GZU2 1588 aa22■■□□□ 1.11
CASC3-208ENST00000583649 MRC2Q9UBG0 1479 aa21.94■■□□□ 1.1
CASC3-208ENST00000583649 CADPSQ9ULU8 1353 aa21.92■■□□□ 1.1
CASC3-208ENST00000583649 OSCARQ8IYS5 282 aa21.92■■□□□ 1.1
CASC3-208ENST00000583649 WDR62O43379 1518 aa21.86■■□□□ 1.09
CASC3-208ENST00000583649 MROH2BQ7Z745 1585 aa21.76■■□□□ 1.07
CASC3-208ENST00000583649 CEP164Q9UPV0 1460 aa21.76■■□□□ 1.07
CASC3-208ENST00000583649 FANCD2Q9BXW9 1451 aa21.64■■□□□ 1.06
CASC3-208ENST00000583649 RIMBP3CA6NJZ7 1639 aa21.51■■□□□ 1.03
CASC3-208ENST00000583649 RIMBP3BA6NNM3 1639 aa21.51■■□□□ 1.03
CASC3-208ENST00000583649 RIMBP3Q9UFD9 1639 aa21.51■■□□□ 1.03
CASC3-208ENST00000583649 CFTRP13569 1480 aa21.5■■□□□ 1.03
CASC3-208ENST00000583649 WIZO95785 1651 aa21.46■■□□□ 1.03
CASC3-208ENST00000583649 TRHP20396 242 aaPredicted RBP21.44■■□□□ 1.02
CASC3-208ENST00000583649 ARHGEF11O15085 1522 aa21.42■■□□□ 1.02
CASC3-208ENST00000583649 URB2Q14146 1524 aaKnown RBP21.42■■□□□ 1.02
CASC3-208ENST00000583649 CYB5RLQ6IPT4 315 aa21.4■■□□□ 1.02
CASC3-208ENST00000583649 IFT140Q96RY7 1462 aa21.35■■□□□ 1.01
CASC3-208ENST00000583649 AEBP2Q6ZN18 517 aaPredicted RBP21.34■■□□□ 1.01
CASC3-208ENST00000583649 ZNF608Q9ULD9 1512 aaPredicted RBP21.24■□□□□ 0.99
CASC3-208ENST00000583649 TOP2AP11388 1531 aaKnown RBP21.23■□□□□ 0.99
CASC3-208ENST00000583649 ABCC8Q09428 1581 aa21.2■□□□□ 0.98
CASC3-208ENST00000583649 PRDM2Q13029 1718 aa21.16■□□□□ 0.98
CASC3-208ENST00000583649 RSF1Q96T23 1441 aaPredicted RBP21.16■□□□□ 0.98
CASC3-208ENST00000583649 FBLN2P98095 1184 aa21.16■□□□□ 0.98
CASC3-208ENST00000583649 EIF4G3O43432 1585 aaKnown RBP21.13■□□□□ 0.97
CASC3-208ENST00000583649 TOPBP1Q92547 1522 aa21.13■□□□□ 0.97
CASC3-208ENST00000583649 ARAP1Q96P48 1450 aa21.13■□□□□ 0.97
CASC3-208ENST00000583649 CHD1O14646 1710 aa21.04■□□□□ 0.96
CASC3-208ENST00000583649 AQRO60306 1485 aaKnown RBP eCLIP21.03■□□□□ 0.962e-7■■■■□ 20.7
CASC3-208ENST00000583649 DNMBPQ6XZF7 1577 aa21.02■□□□□ 0.95
CASC3-208ENST00000583649 CCDC88BA6NC98 1476 aa20.97■□□□□ 0.95
CASC3-208ENST00000583649 CHMP7Q8WUX9 453 aaPredicted RBP20.93■□□□□ 0.94
CASC3-208ENST00000583649 TARBP1Q13395 1621 aaKnown RBP20.93■□□□□ 0.94
CASC3-208ENST00000583649 SYNJ1O43426 1573 aa20.88■□□□□ 0.93
CASC3-208ENST00000583649 POLA1P09884 1462 aaPredicted RBP20.87■□□□□ 0.93
CASC3-208ENST00000583649 SOGA1O94964 1423 aa20.85■□□□□ 0.93
CASC3-208ENST00000583649 TDRD9Q8NDG6 1382 aaKnown RBP20.84■□□□□ 0.93
CASC3-208ENST00000583649 WDR97A6NE52 1622 aa20.82■□□□□ 0.92
CASC3-208ENST00000583649 CLASP1Q7Z460 1538 aa20.82■□□□□ 0.92
CASC3-208ENST00000583649 SNAPC4Q5SXM2 1469 aa20.81■□□□□ 0.92
CASC3-208ENST00000583649 MAGI1Q96QZ7 1491 aaPredicted RBP20.8■□□□□ 0.92
CASC3-208ENST00000583649 RAD54L2Q9Y4B4 1467 aa20.77■□□□□ 0.92
CASC3-208ENST00000583649 GRIN2BQ13224 1484 aa20.74■□□□□ 0.91
CASC3-208ENST00000583649 SYNJ2O15056 1496 aa20.73■□□□□ 0.91
CASC3-208ENST00000583649 GAPVD1Q14C86 1478 aa20.73■□□□□ 0.91
CASC3-208ENST00000583649 FGD5Q6ZNL6 1462 aa20.66■□□□□ 0.9
CASC3-208ENST00000583649 CUX1P39880 1505 aa20.49■□□□□ 0.87
CASC3-208ENST00000583649 PBRM1Q86U86 1689 aa20.49■□□□□ 0.87
CASC3-208ENST00000583649 GRIN2AQ12879 1464 aa20.43■□□□□ 0.86
CASC3-208ENST00000583649 NPM1P06748 294 aaKnown RBP eCLIP20.41■□□□□ 0.86
CASC3-208ENST00000583649 ABCA10Q8WWZ4 1543 aa20.41■□□□□ 0.86
CASC3-208ENST00000583649 CEP170Q5SW79 1584 aa20.38■□□□□ 0.85
CASC3-208ENST00000583649 ABCA5Q8WWZ7 1642 aa20.37■□□□□ 0.85
CASC3-208ENST00000583649 ERCC6L2Q5T890 1561 aa20.37■□□□□ 0.85
CASC3-208ENST00000583649 NUP160Q12769 1436 aa20.36■□□□□ 0.85
CASC3-208ENST00000583649 FAM69CQ0P6D2 419 aa20.35■□□□□ 0.85
CASC3-208ENST00000583649 KIF13AQ9H1H9 1805 aa20.3■□□□□ 0.84
CASC3-208ENST00000583649 FHAD1B1AJZ9 1412 aa20.3■□□□□ 0.84
CASC3-208ENST00000583649 WRNQ14191 1432 aaPredicted RBP eCLIP20.3■□□□□ 0.84
CASC3-208ENST00000583649 SHROOM2Q13796 1616 aa20.28■□□□□ 0.84
CASC3-208ENST00000583649 ILDR1Q86SU0 546 aaPredicted RBP20.28■□□□□ 0.84
CASC3-208ENST00000583649 ADAMTS12P58397 1594 aa20.28■□□□□ 0.84
CASC3-208ENST00000583649 ABCC10Q5T3U5 1492 aa20.27■□□□□ 0.84
CASC3-208ENST00000583649 PRG4Q92954 1404 aaPredicted RBP20.26■□□□□ 0.83
CASC3-208ENST00000583649 JPH4Q96JJ6 628 aa20.25■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 57.5 ms