RNA–Protein interactions for RNA: ENST00000460378.1

EPB41-208, Transcript of erythrocyte membrane protein band 4.1, humanhuman

TSL 1 (best)

Gene EPB41, Length 5,212 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
EPB41-208ENST00000460378 NISCHQ9Y2I1 1504 aa19.87■□□□□ 0.77
EPB41-208ENST00000460378 DCAF8L2P0C7V8 631 aa19.5■□□□□ 0.71
EPB41-208ENST00000460378 ABCC9O60706 1549 aa18.23■□□□□ 0.51
EPB41-208ENST00000460378 PABPN1Q86U42 306 aaKnown RBP eCLIP17.54■□□□□ 0.4
EPB41-208ENST00000460378 SHROOM4Q9ULL8 1493 aa17.28■□□□□ 0.36
EPB41-208ENST00000460378 CCDC180Q9P1Z9 1646 aa17.18■□□□□ 0.34
EPB41-208ENST00000460378 RB1CC1Q8TDY2 1594 aa17.09■□□□□ 0.33
EPB41-208ENST00000460378 FAM9AQ8IZU1 332 aaPredicted RBP17.03■□□□□ 0.32
EPB41-208ENST00000460378 SUPT5HO00267 1087 aaKnown RBP16.88■□□□□ 0.29
EPB41-208ENST00000460378 NACADO15069 1562 aa16.79■□□□□ 0.28
EPB41-208ENST00000460378 SCRIBQ14160 1630 aa16.63■□□□□ 0.25
EPB41-208ENST00000460378 ERCC6Q03468 1493 aa16.46■□□□□ 0.23
EPB41-208ENST00000460378 FBLN2P98095 1184 aa16.42■□□□□ 0.22
EPB41-208ENST00000460378 CECR2Q9BXF3 1484 aa16.32■□□□□ 0.2
EPB41-208ENST00000460378 ZCCHC6Q5VYS8 1495 aaKnown RBP16.28■□□□□ 0.2
EPB41-208ENST00000460378 TTBK1Q5TCY1 1321 aaPredicted RBP16.19■□□□□ 0.18
EPB41-208ENST00000460378 TRIM41Q8WV44 630 aa16.11■□□□□ 0.17
EPB41-208ENST00000460378 NPM1P06748 294 aaKnown RBP eCLIP16.1■□□□□ 0.17
EPB41-208ENST00000460378 DNAJC5BQ9UF47 199 aa16.09■□□□□ 0.17
EPB41-208ENST00000460378 ATP1B4Q9UN42 357 aaPredicted RBP16.05■□□□□ 0.16
EPB41-208ENST00000460378 TRHP20396 242 aaPredicted RBP16.04■□□□□ 0.16
EPB41-208ENST00000460378 MYT1LQ9UL68 1186 aa16.04■□□□□ 0.16
EPB41-208ENST00000460378 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.03■□□□□ 0.16
EPB41-208ENST00000460378 HNRNPUL2Q1KMD3 747 aaKnown RBP16.03■□□□□ 0.16
EPB41-208ENST00000460378 MYO15BQ96JP2 1530 aa16.03■□□□□ 0.16
EPB41-208ENST00000460378 BAZ1BQ9UIG0 1483 aaKnown RBP16■□□□□ 0.15
EPB41-208ENST00000460378 EHMT2Q96KQ7 1210 aa16■□□□□ 0.15
EPB41-208ENST00000460378 DCAF1Q9Y4B6 1507 aa15.99■□□□□ 0.15
EPB41-208ENST00000460378 RANGAP1P46060 587 aaPredicted RBP15.97■□□□□ 0.15
EPB41-208ENST00000460378 APLP2Q06481 763 aa15.95■□□□□ 0.14
EPB41-208ENST00000460378 CHMP7Q8WUX9 453 aaPredicted RBP15.94■□□□□ 0.14
EPB41-208ENST00000460378 PDS5BQ9NTI5 1447 aa15.93■□□□□ 0.14
EPB41-208ENST00000460378 AEBP2Q6ZN18 517 aaPredicted RBP15.84■□□□□ 0.13
EPB41-208ENST00000460378 SMARCA2P51531 1590 aa15.79■□□□□ 0.12
EPB41-208ENST00000460378 UBTFP17480 764 aaKnown RBP15.77■□□□□ 0.11
EPB41-208ENST00000460378 OSCARQ8IYS5 282 aa15.75■□□□□ 0.11
EPB41-208ENST00000460378 BAZ1AQ9NRL2 1556 aaPredicted RBP15.71■□□□□ 0.11
EPB41-208ENST00000460378 EIF4G1Q04637 1599 aaKnown RBP15.7■□□□□ 0.1
EPB41-208ENST00000460378 CC2D2AQ9P2K1 1620 aa15.68■□□□□ 0.1
EPB41-208ENST00000460378 ESF1Q9H501 851 aaKnown RBP15.58■□□□□ 0.08
EPB41-208ENST00000460378 CADPSQ9ULU8 1353 aa15.56■□□□□ 0.08
EPB41-208ENST00000460378 ATAD2BQ9ULI0 1458 aa15.52■□□□□ 0.07
EPB41-208ENST00000460378 CYB5RLQ6IPT4 315 aa15.51■□□□□ 0.07
EPB41-208ENST00000460378 CEP164Q9UPV0 1460 aa15.49■□□□□ 0.07
EPB41-208ENST00000460378 NCAPD3P42695 1498 aa15.45■□□□□ 0.06
EPB41-208ENST00000460378 PLPPR3Q6T4P5 718 aa15.41■□□□□ 0.06
EPB41-208ENST00000460378 CHIC1Q5VXU3 224 aa15.37■□□□□ 0.05
EPB41-208ENST00000460378 CDK11AQ9UQ88 783 aaPredicted RBP15.37■□□□□ 0.05
EPB41-208ENST00000460378 BICRAQ9NZM4 1560 aa15.33■□□□□ 0.04
EPB41-208ENST00000460378 ARID4BQ4LE39 1312 aaPredicted RBP15.32■□□□□ 0.04
EPB41-208ENST00000460378 FANCD2Q9BXW9 1451 aa15.31■□□□□ 0.04
EPB41-208ENST00000460378 ARID3CA6NKF2 412 aa15.31■□□□□ 0.04
EPB41-208ENST00000460378 RSF1Q96T23 1441 aaPredicted RBP15.31■□□□□ 0.04
EPB41-208ENST00000460378 ABCC8Q09428 1581 aa15.28■□□□□ 0.04
EPB41-208ENST00000460378 SMARCA4P51532 1647 aa15.27■□□□□ 0.04
EPB41-208ENST00000460378 DNAJC5Q9H3Z4 198 aa15.27■□□□□ 0.04
EPB41-208ENST00000460378 MRC2Q9UBG0 1479 aa15.26■□□□□ 0.03
EPB41-208ENST00000460378 SOGA1O94964 1423 aa15.25■□□□□ 0.03
EPB41-208ENST00000460378 CUX2O14529 1486 aa15.25■□□□□ 0.03
EPB41-208ENST00000460378 P3H3Q8IVL6 736 aa15.24■□□□□ 0.03
EPB41-208ENST00000460378 KCNH8Q96L42 1107 aa15.24■□□□□ 0.03
EPB41-208ENST00000460378 MROH2BQ7Z745 1585 aa15.23■□□□□ 0.03
EPB41-208ENST00000460378 TDRD9Q8NDG6 1382 aaKnown RBP15.2■□□□□ 0.02
EPB41-208ENST00000460378 WRNQ14191 1432 aaPredicted RBP eCLIP15.19■□□□□ 0.02
EPB41-208ENST00000460378 NESP48681 1621 aa15.17■□□□□ 0.02
EPB41-208ENST00000460378 HMGXB3Q12766 1538 aa15.15■□□□□ 0.02
EPB41-208ENST00000460378 BCANQ96GW7 911 aa15.14■□□□□ 0.01
EPB41-208ENST00000460378 CARMIL2Q6F5E8 1435 aa15.1■□□□□ 0.01
EPB41-208ENST00000460378 PLEKHD1A6NEE1 506 aa15.09■□□□□ 0.01
EPB41-208ENST00000460378 ZNF777Q9ULD5 760 aaPredicted RBP15.08■□□□□ 0
EPB41-208ENST00000460378 LAMC3Q9Y6N6 1575 aa15.07■□□□□ 0
EPB41-208ENST00000460378 KIF27Q86VH2 1401 aa15.07■□□□□ 0
EPB41-208ENST00000460378 CSRNP3Q8WYN3 585 aa15.05■□□□□ -0
EPB41-208ENST00000460378 TOP2AP11388 1531 aaKnown RBP15.05■□□□□ -0
EPB41-208ENST00000460378 IFT140Q96RY7 1462 aa15.04■□□□□ -0
EPB41-208ENST00000460378 CCDC88BA6NC98 1476 aa15.03■□□□□ -0
EPB41-208ENST00000460378 FAM69CQ0P6D2 419 aa15.03■□□□□ -0
EPB41-208ENST00000460378 STAG3Q9UJ98 1225 aa15.03■□□□□ -0
EPB41-208ENST00000460378 UNC13AQ9UPW8 1703 aa15.01□□□□□ -0.01
EPB41-208ENST00000460378 JPH4Q96JJ6 628 aa15□□□□□ -0.01
EPB41-208ENST00000460378 WIZO95785 1651 aa14.94□□□□□ -0.02
EPB41-208ENST00000460378 AQRO60306 1485 aaKnown RBP eCLIP14.91□□□□□ -0.027e-7■■□□□ 13.3
EPB41-208ENST00000460378 CFTRP13569 1480 aa14.88□□□□□ -0.03
EPB41-208ENST00000460378 MLECQ14165 292 aa14.88□□□□□ -0.03
EPB41-208ENST00000460378 CARMIL1Q5VZK9 1371 aa14.88□□□□□ -0.03
EPB41-208ENST00000460378 GRIN2BQ13224 1484 aa14.85□□□□□ -0.03
EPB41-208ENST00000460378 GAPVD1Q14C86 1478 aa14.84□□□□□ -0.03
EPB41-208ENST00000460378 PTPRGP23470 1445 aa14.84□□□□□ -0.03
EPB41-208ENST00000460378 ITGAEP38570 1179 aa14.83□□□□□ -0.04
EPB41-208ENST00000460378 SCAF1Q9H7N4 1312 aaKnown RBP14.83□□□□□ -0.04
EPB41-208ENST00000460378 TSPY4P0CV99 314 aa14.8□□□□□ -0.04
EPB41-208ENST00000460378 TSPY10P0CW01 314 aa14.8□□□□□ -0.04
EPB41-208ENST00000460378 FAM50AQ14320 339 aaKnown RBP14.79□□□□□ -0.04
EPB41-208ENST00000460378 FGD5Q6ZNL6 1462 aa14.76□□□□□ -0.05
EPB41-208ENST00000460378 RAD54L2Q9Y4B4 1467 aa14.76□□□□□ -0.05
EPB41-208ENST00000460378 TOPBP1Q92547 1522 aa14.74□□□□□ -0.05
EPB41-208ENST00000460378 C14orf37Q86TY3 774 aa14.73□□□□□ -0.05
EPB41-208ENST00000460378 CHGAP10645 457 aaKnown RBP14.73□□□□□ -0.05
EPB41-208ENST00000460378 SNAPC4Q5SXM2 1469 aa14.69□□□□□ -0.06
EPB41-208ENST00000460378 FHAD1B1AJZ9 1412 aa14.69□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms