RNA–Protein interactions for RNA: ENST00000309784.8

TRIM59-201, Transcript of tripartite motif containing 59, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM59, Length 3,867 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM59-201ENST00000309784 NISCHQ9Y2I1 1504 aa24.51■■□□□ 1.51
TRIM59-201ENST00000309784 CCDC180Q9P1Z9 1646 aa21.17■□□□□ 0.98
TRIM59-201ENST00000309784 DCAF8L2P0C7V8 631 aa21.04■□□□□ 0.96
TRIM59-201ENST00000309784 SHROOM4Q9ULL8 1493 aa20.55■□□□□ 0.88
TRIM59-201ENST00000309784 ABCC9O60706 1549 aa20.54■□□□□ 0.88
TRIM59-201ENST00000309784 ZCCHC6Q5VYS8 1495 aaKnown RBP20.52■□□□□ 0.88
TRIM59-201ENST00000309784 DCAF1Q9Y4B6 1507 aa20.04■□□□□ 0.8
TRIM59-201ENST00000309784 NACADO15069 1562 aa19.85■□□□□ 0.77
TRIM59-201ENST00000309784 SUPT5HO00267 1087 aaKnown RBP19.85■□□□□ 0.77
TRIM59-201ENST00000309784 SCRIBQ14160 1630 aa19.83■□□□□ 0.76
TRIM59-201ENST00000309784 RB1CC1Q8TDY2 1594 aa19.77■□□□□ 0.76
TRIM59-201ENST00000309784 MYO15BQ96JP2 1530 aa19.77■□□□□ 0.76
TRIM59-201ENST00000309784 PABPN1Q86U42 306 aaKnown RBP eCLIP19.53■□□□□ 0.72
TRIM59-201ENST00000309784 UNC13AQ9UPW8 1703 aa19.18■□□□□ 0.66
TRIM59-201ENST00000309784 CECR2Q9BXF3 1484 aa19.18■□□□□ 0.66
TRIM59-201ENST00000309784 RSF1Q96T23 1441 aaPredicted RBP19.09■□□□□ 0.65
TRIM59-201ENST00000309784 BICRAQ9NZM4 1560 aa19.04■□□□□ 0.64
TRIM59-201ENST00000309784 MROH2BQ7Z745 1585 aa19■□□□□ 0.63
TRIM59-201ENST00000309784 BAZ1AQ9NRL2 1556 aaPredicted RBP18.95■□□□□ 0.62
TRIM59-201ENST00000309784 WIZO95785 1651 aa18.84■□□□□ 0.61
TRIM59-201ENST00000309784 SMARCA4P51532 1647 aa18.82■□□□□ 0.6
TRIM59-201ENST00000309784 CHIC1Q5VXU3 224 aa18.7■□□□□ 0.58
TRIM59-201ENST00000309784 EIF4G1Q04637 1599 aaKnown RBP18.6■□□□□ 0.57
TRIM59-201ENST00000309784 BAZ1BQ9UIG0 1483 aaKnown RBP18.6■□□□□ 0.57
TRIM59-201ENST00000309784 ATAD2BQ9ULI0 1458 aa18.59■□□□□ 0.57
TRIM59-201ENST00000309784 TOP2AP11388 1531 aaKnown RBP18.57■□□□□ 0.56
TRIM59-201ENST00000309784 SMARCA2P51531 1590 aa18.55■□□□□ 0.56
TRIM59-201ENST00000309784 TRIM41Q8WV44 630 aa18.55■□□□□ 0.56
TRIM59-201ENST00000309784 CCDC88BA6NC98 1476 aa18.49■□□□□ 0.55
TRIM59-201ENST00000309784 FAM9AQ8IZU1 332 aaPredicted RBP18.42■□□□□ 0.54
TRIM59-201ENST00000309784 PEG3Q9GZU2 1588 aa18.4■□□□□ 0.54
TRIM59-201ENST00000309784 NCAPD3P42695 1498 aa18.36■□□□□ 0.53
TRIM59-201ENST00000309784 CC2D2AQ9P2K1 1620 aa18.36■□□□□ 0.53
TRIM59-201ENST00000309784 EHMT2Q96KQ7 1210 aa18.35■□□□□ 0.53
TRIM59-201ENST00000309784 HMGXB3Q12766 1538 aa18.26■□□□□ 0.51
TRIM59-201ENST00000309784 ABCC8Q09428 1581 aa18.18■□□□□ 0.5
TRIM59-201ENST00000309784 LOC105371045A0A1W2PR82 267 aa18.16■□□□□ 0.5
TRIM59-201ENST00000309784 DNAJC5BQ9UF47 199 aa18.12■□□□□ 0.49
TRIM59-201ENST00000309784 WRNQ14191 1432 aaPredicted RBP eCLIP18.08■□□□□ 0.48
TRIM59-201ENST00000309784 CADPSQ9ULU8 1353 aa18.04■□□□□ 0.48
TRIM59-201ENST00000309784 CFTRP13569 1480 aa17.98■□□□□ 0.47
TRIM59-201ENST00000309784 NESP48681 1621 aa17.94■□□□□ 0.46
TRIM59-201ENST00000309784 SOGA1O94964 1423 aa17.88■□□□□ 0.45
TRIM59-201ENST00000309784 UBTFP17480 764 aaKnown RBP17.87■□□□□ 0.45
TRIM59-201ENST00000309784 SYNJ1O43426 1573 aa17.86■□□□□ 0.45
TRIM59-201ENST00000309784 FANCD2Q9BXW9 1451 aa17.86■□□□□ 0.45
TRIM59-201ENST00000309784 CSRNP3Q8WYN3 585 aa17.85■□□□□ 0.45
TRIM59-201ENST00000309784 RANGAP1P46060 587 aaPredicted RBP17.8■□□□□ 0.44
TRIM59-201ENST00000309784 PDS5BQ9NTI5 1447 aa17.79■□□□□ 0.44
TRIM59-201ENST00000309784 RUSC2Q8N2Y8 1516 aa17.77■□□□□ 0.44
TRIM59-201ENST00000309784 CEP164Q9UPV0 1460 aa17.75■□□□□ 0.43
TRIM59-201ENST00000309784 CUX1P39880 1505 aa17.74■□□□□ 0.43
TRIM59-201ENST00000309784 LAMC3Q9Y6N6 1575 aa17.73■□□□□ 0.43
TRIM59-201ENST00000309784 TOP2BQ02880 1626 aa17.72■□□□□ 0.43
TRIM59-201ENST00000309784 EEA1Q15075 1411 aa17.71■□□□□ 0.43
TRIM59-201ENST00000309784 ERCC6Q03468 1493 aa17.69■□□□□ 0.42
TRIM59-201ENST00000309784 PRDM2Q13029 1718 aa17.65■□□□□ 0.42
TRIM59-201ENST00000309784 FGD5Q6ZNL6 1462 aa17.65■□□□□ 0.42
TRIM59-201ENST00000309784 KIF27Q86VH2 1401 aa17.64■□□□□ 0.41
TRIM59-201ENST00000309784 CUX2O14529 1486 aa17.64■□□□□ 0.41
TRIM59-201ENST00000309784 BIVM-ERCC5R4GMW8 1640 aa17.61■□□□□ 0.41
TRIM59-201ENST00000309784 TOPBP1Q92547 1522 aa17.59■□□□□ 0.41
TRIM59-201ENST00000309784 RAD54L2Q9Y4B4 1467 aa17.58■□□□□ 0.4
TRIM59-201ENST00000309784 GOLGA3Q08378 1498 aa17.56■□□□□ 0.4
TRIM59-201ENST00000309784 DNMBPQ6XZF7 1577 aa17.56■□□□□ 0.4
TRIM59-201ENST00000309784 URB2Q14146 1524 aaKnown RBP17.54■□□□□ 0.4
TRIM59-201ENST00000309784 KIF21AQ7Z4S6 1674 aa17.54■□□□□ 0.4
TRIM59-201ENST00000309784 PPARGC1BQ86YN6 1023 aaKnown RBP17.53■□□□□ 0.4
TRIM59-201ENST00000309784 TTBK1Q5TCY1 1321 aaPredicted RBP17.53■□□□□ 0.4
TRIM59-201ENST00000309784 POLA1P09884 1462 aaPredicted RBP17.53■□□□□ 0.4
TRIM59-201ENST00000309784 TDRD9Q8NDG6 1382 aaKnown RBP17.52■□□□□ 0.4
TRIM59-201ENST00000309784 MRC2Q9UBG0 1479 aa17.48■□□□□ 0.39
TRIM59-201ENST00000309784 RAPGEF2Q9Y4G8 1499 aa17.47■□□□□ 0.39
TRIM59-201ENST00000309784 TNIKQ9UKE5 1360 aa17.47■□□□□ 0.39
TRIM59-201ENST00000309784 CEP162Q5TB80 1403 aa17.45■□□□□ 0.38
TRIM59-201ENST00000309784 CARMIL1Q5VZK9 1371 aa17.43■□□□□ 0.38
TRIM59-201ENST00000309784 PCGF6Q9BYE7 350 aa17.43■□□□□ 0.38
TRIM59-201ENST00000309784 IGF1RP08069 1367 aa17.42■□□□□ 0.38
TRIM59-201ENST00000309784 APLP2Q06481 763 aa17.4■□□□□ 0.38
TRIM59-201ENST00000309784 FBLN2P98095 1184 aa17.37■□□□□ 0.37
TRIM59-201ENST00000309784 ABCA10Q8WWZ4 1543 aa17.37■□□□□ 0.37
TRIM59-201ENST00000309784 CLIP1P30622 1438 aa17.37■□□□□ 0.37
TRIM59-201ENST00000309784 KIF21BO75037 1637 aa17.36■□□□□ 0.37
TRIM59-201ENST00000309784 GAPVD1Q14C86 1478 aa17.34■□□□□ 0.37
TRIM59-201ENST00000309784 AQRO60306 1485 aaKnown RBP eCLIP17.34■□□□□ 0.378e-7■■■■■ 28.7
TRIM59-201ENST00000309784 PRXQ9BXM0 1461 aa17.34■□□□□ 0.37
TRIM59-201ENST00000309784 P3H3Q8IVL6 736 aa17.33■□□□□ 0.36
TRIM59-201ENST00000309784 ATP1B4Q9UN42 357 aaPredicted RBP17.33■□□□□ 0.36
TRIM59-201ENST00000309784 ERICH3Q5RHP9 1530 aa17.26■□□□□ 0.35
TRIM59-201ENST00000309784 IFT140Q96RY7 1462 aa17.26■□□□□ 0.35
TRIM59-201ENST00000309784 WDR62O43379 1518 aa17.24■□□□□ 0.35
TRIM59-201ENST00000309784 TRIM26Q12899 539 aaPredicted RBP17.24■□□□□ 0.35
TRIM59-201ENST00000309784 ZNF608Q9ULD9 1512 aaPredicted RBP17.24■□□□□ 0.35
TRIM59-201ENST00000309784 CHMP7Q8WUX9 453 aaPredicted RBP17.23■□□□□ 0.35
TRIM59-201ENST00000309784 TARBP1Q13395 1621 aaKnown RBP17.18■□□□□ 0.34
TRIM59-201ENST00000309784 GRIN2BQ13224 1484 aa17.17■□□□□ 0.34
TRIM59-201ENST00000309784 THOC2Q8NI27 1593 aaKnown RBP17.16■□□□□ 0.34
TRIM59-201ENST00000309784 ABCA5Q8WWZ7 1642 aa17.13■□□□□ 0.33
TRIM59-201ENST00000309784 CUL7Q14999 1698 aa17.13■□□□□ 0.33
TRIM59-201ENST00000309784 WDR97A6NE52 1622 aa17.11■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 83.2 ms