RNA–Protein interactions for RNA: ENST00000543469.1

TRIM59-208, Transcript of tripartite motif containing 59, humanhuman

TSL 5 BASIC

Gene TRIM59, Length 4,615 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM59-208ENST00000543469 NISCHQ9Y2I1 1504 aa17.12■□□□□ 0.33
TRIM59-208ENST00000543469 CCDC180Q9P1Z9 1646 aa15.05■□□□□ -0
TRIM59-208ENST00000543469 DCAF8L2P0C7V8 631 aa14.67□□□□□ -0.06
TRIM59-208ENST00000543469 ZCCHC6Q5VYS8 1495 aaKnown RBP14.32□□□□□ -0.12
TRIM59-208ENST00000543469 ABCC9O60706 1549 aa14.31□□□□□ -0.12
TRIM59-208ENST00000543469 DCAF1Q9Y4B6 1507 aa14.25□□□□□ -0.13
TRIM59-208ENST00000543469 NACADO15069 1562 aa14.18□□□□□ -0.14
TRIM59-208ENST00000543469 MYO15BQ96JP2 1530 aa14.16□□□□□ -0.14
TRIM59-208ENST00000543469 RB1CC1Q8TDY2 1594 aa14.13□□□□□ -0.15
TRIM59-208ENST00000543469 SHROOM4Q9ULL8 1493 aa13.98□□□□□ -0.17
TRIM59-208ENST00000543469 SCRIBQ14160 1630 aa13.74□□□□□ -0.21
TRIM59-208ENST00000543469 SUPT5HO00267 1087 aaKnown RBP13.64□□□□□ -0.23
TRIM59-208ENST00000543469 PABPN1Q86U42 306 aaKnown RBP eCLIP13.49□□□□□ -0.25
TRIM59-208ENST00000543469 BAZ1AQ9NRL2 1556 aaPredicted RBP13.41□□□□□ -0.26
TRIM59-208ENST00000543469 SMARCA2P51531 1590 aa13.25□□□□□ -0.29
TRIM59-208ENST00000543469 RSF1Q96T23 1441 aaPredicted RBP13.21□□□□□ -0.29
TRIM59-208ENST00000543469 BAZ1BQ9UIG0 1483 aaKnown RBP13.15□□□□□ -0.3
TRIM59-208ENST00000543469 SMARCA4P51532 1647 aa13.15□□□□□ -0.3
TRIM59-208ENST00000543469 BICRAQ9NZM4 1560 aa13.13□□□□□ -0.31
TRIM59-208ENST00000543469 UNC13AQ9UPW8 1703 aa13.12□□□□□ -0.31
TRIM59-208ENST00000543469 CECR2Q9BXF3 1484 aa13.09□□□□□ -0.31
TRIM59-208ENST00000543469 MROH2BQ7Z745 1585 aa13.06□□□□□ -0.32
TRIM59-208ENST00000543469 TOP2AP11388 1531 aaKnown RBP13.05□□□□□ -0.32
TRIM59-208ENST00000543469 EIF4G1Q04637 1599 aaKnown RBP13.02□□□□□ -0.32
TRIM59-208ENST00000543469 TRIM41Q8WV44 630 aa13.01□□□□□ -0.33
TRIM59-208ENST00000543469 ATAD2BQ9ULI0 1458 aa13.01□□□□□ -0.33
TRIM59-208ENST00000543469 NCAPD3P42695 1498 aa12.98□□□□□ -0.33
TRIM59-208ENST00000543469 HMGXB3Q12766 1538 aa12.97□□□□□ -0.33
TRIM59-208ENST00000543469 PEG3Q9GZU2 1588 aa12.93□□□□□ -0.34
TRIM59-208ENST00000543469 WIZO95785 1651 aa12.9□□□□□ -0.34
TRIM59-208ENST00000543469 FAM9AQ8IZU1 332 aaPredicted RBP12.88□□□□□ -0.35
TRIM59-208ENST00000543469 CC2D2AQ9P2K1 1620 aa12.82□□□□□ -0.36
TRIM59-208ENST00000543469 CCDC88BA6NC98 1476 aa12.81□□□□□ -0.36
TRIM59-208ENST00000543469 CHIC1Q5VXU3 224 aa12.81□□□□□ -0.36
TRIM59-208ENST00000543469 PDS5BQ9NTI5 1447 aa12.78□□□□□ -0.36
TRIM59-208ENST00000543469 CADPSQ9ULU8 1353 aa12.75□□□□□ -0.37
TRIM59-208ENST00000543469 EEA1Q15075 1411 aa12.73□□□□□ -0.37
TRIM59-208ENST00000543469 ABCC8Q09428 1581 aa12.72□□□□□ -0.37
TRIM59-208ENST00000543469 WRNQ14191 1432 aaPredicted RBP eCLIP12.69□□□□□ -0.38
TRIM59-208ENST00000543469 ERCC6Q03468 1493 aa12.65□□□□□ -0.38
TRIM59-208ENST00000543469 LAMC3Q9Y6N6 1575 aa12.62□□□□□ -0.39
TRIM59-208ENST00000543469 CFTRP13569 1480 aa12.62□□□□□ -0.39
TRIM59-208ENST00000543469 CEP164Q9UPV0 1460 aa12.61□□□□□ -0.39
TRIM59-208ENST00000543469 APLP2Q06481 763 aa12.61□□□□□ -0.39
TRIM59-208ENST00000543469 UBTFP17480 764 aaKnown RBP12.58□□□□□ -0.4
TRIM59-208ENST00000543469 FANCD2Q9BXW9 1451 aa12.56□□□□□ -0.4
TRIM59-208ENST00000543469 KIF27Q86VH2 1401 aa12.54□□□□□ -0.4
TRIM59-208ENST00000543469 CSRNP3Q8WYN3 585 aa12.53□□□□□ -0.4
TRIM59-208ENST00000543469 MRC2Q9UBG0 1479 aa12.45□□□□□ -0.42
TRIM59-208ENST00000543469 PRDM2Q13029 1718 aa12.43□□□□□ -0.42
TRIM59-208ENST00000543469 DNMBPQ6XZF7 1577 aa12.41□□□□□ -0.42
TRIM59-208ENST00000543469 SOGA1O94964 1423 aa12.4□□□□□ -0.42
TRIM59-208ENST00000543469 GOLGA3Q08378 1498 aa12.4□□□□□ -0.42
TRIM59-208ENST00000543469 TOP2BQ02880 1626 aa12.39□□□□□ -0.43
TRIM59-208ENST00000543469 CUX2O14529 1486 aa12.37□□□□□ -0.43
TRIM59-208ENST00000543469 IFT140Q96RY7 1462 aa12.34□□□□□ -0.43
TRIM59-208ENST00000543469 EHMT2Q96KQ7 1210 aa12.34□□□□□ -0.43
TRIM59-208ENST00000543469 FGD5Q6ZNL6 1462 aa12.32□□□□□ -0.44
TRIM59-208ENST00000543469 TOPBP1Q92547 1522 aa12.32□□□□□ -0.44
TRIM59-208ENST00000543469 BIVM-ERCC5R4GMW8 1640 aa12.31□□□□□ -0.44
TRIM59-208ENST00000543469 NESP48681 1621 aa12.29□□□□□ -0.44
TRIM59-208ENST00000543469 DNAJC5BQ9UF47 199 aa12.29□□□□□ -0.44
TRIM59-208ENST00000543469 TNIKQ9UKE5 1360 aa12.28□□□□□ -0.44
TRIM59-208ENST00000543469 CHMP7Q8WUX9 453 aaPredicted RBP12.28□□□□□ -0.44
TRIM59-208ENST00000543469 CARMIL1Q5VZK9 1371 aa12.27□□□□□ -0.44
TRIM59-208ENST00000543469 CUX1P39880 1505 aa12.27□□□□□ -0.45
TRIM59-208ENST00000543469 WDR97A6NE52 1622 aa12.26□□□□□ -0.45
TRIM59-208ENST00000543469 SYNJ1O43426 1573 aa12.25□□□□□ -0.45
TRIM59-208ENST00000543469 RAPGEF2Q9Y4G8 1499 aa12.23□□□□□ -0.45
TRIM59-208ENST00000543469 FBLN2P98095 1184 aa12.23□□□□□ -0.45
TRIM59-208ENST00000543469 ABCA10Q8WWZ4 1543 aa12.23□□□□□ -0.45
TRIM59-208ENST00000543469 GAPVD1Q14C86 1478 aa12.23□□□□□ -0.45
TRIM59-208ENST00000543469 GRIN2BQ13224 1484 aa12.22□□□□□ -0.45
TRIM59-208ENST00000543469 POLA1P09884 1462 aaPredicted RBP12.21□□□□□ -0.45
TRIM59-208ENST00000543469 ERICH3Q5RHP9 1530 aa12.21□□□□□ -0.46
TRIM59-208ENST00000543469 RANGAP1P46060 587 aaPredicted RBP12.2□□□□□ -0.46
TRIM59-208ENST00000543469 LOC105371045A0A1W2PR82 267 aa12.19□□□□□ -0.46
TRIM59-208ENST00000543469 KIF21BO75037 1637 aa12.19□□□□□ -0.46
TRIM59-208ENST00000543469 ATP1B4Q9UN42 357 aaPredicted RBP12.18□□□□□ -0.46
TRIM59-208ENST00000543469 CLIP1P30622 1438 aa12.18□□□□□ -0.46
TRIM59-208ENST00000543469 WDR62O43379 1518 aa12.17□□□□□ -0.46
TRIM59-208ENST00000543469 CUL7Q14999 1698 aa12.17□□□□□ -0.46
TRIM59-208ENST00000543469 CDK11AQ9UQ88 783 aaPredicted RBP12.17□□□□□ -0.46
TRIM59-208ENST00000543469 FHAD1B1AJZ9 1412 aa12.17□□□□□ -0.46
TRIM59-208ENST00000543469 URB2Q14146 1524 aaKnown RBP12.16□□□□□ -0.46
TRIM59-208ENST00000543469 TDRD9Q8NDG6 1382 aaKnown RBP12.15□□□□□ -0.46
TRIM59-208ENST00000543469 CARMIL2Q6F5E8 1435 aa12.14□□□□□ -0.47
TRIM59-208ENST00000543469 KIF21AQ7Z4S6 1674 aa12.12□□□□□ -0.47
TRIM59-208ENST00000543469 RAD54L2Q9Y4B4 1467 aa12.12□□□□□ -0.47
TRIM59-208ENST00000543469 CEP162Q5TB80 1403 aa12.12□□□□□ -0.47
TRIM59-208ENST00000543469 IGF1RP08069 1367 aa12.11□□□□□ -0.47
TRIM59-208ENST00000543469 MAGI1Q96QZ7 1491 aaPredicted RBP12.11□□□□□ -0.47
TRIM59-208ENST00000543469 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.08□□□□□ -0.48
TRIM59-208ENST00000543469 HNRNPUL2Q1KMD3 747 aaKnown RBP12.08□□□□□ -0.48
TRIM59-208ENST00000543469 PRXQ9BXM0 1461 aa12.06□□□□□ -0.48
TRIM59-208ENST00000543469 FMN1Q68DA7 1419 aa12.06□□□□□ -0.48
TRIM59-208ENST00000543469 TRIM26Q12899 539 aaPredicted RBP12.05□□□□□ -0.48
TRIM59-208ENST00000543469 NPM1P06748 294 aaKnown RBP eCLIP12.04□□□□□ -0.48
TRIM59-208ENST00000543469 EFCAB5A4FU69 1503 aa12.03□□□□□ -0.48
TRIM59-208ENST00000543469 SYNJ2O15056 1496 aa12.01□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms