RNA–Protein interactions for RNA: ENST00000553999.5

HIF1A-206, Transcript of hypoxia inducible factor 1 subunit alpha, humanhuman

TSL 4

Gene HIF1A, Length 616 nt, Biotype processed transcript, Subcellular localisation Cytosol, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HIF1A-206ENST00000553999 NISCHQ9Y2I1 1504 aa50.67■■■■■ 5.7
HIF1A-206ENST00000553999 CCDC180Q9P1Z9 1646 aa45.15■■■■■ 4.82
HIF1A-206ENST00000553999 ABCC9O60706 1549 aa44.85■■■■■ 4.77
HIF1A-206ENST00000553999 DCAF8L2P0C7V8 631 aa42.8■■■■■ 4.44
HIF1A-206ENST00000553999 RB1CC1Q8TDY2 1594 aa42.76■■■■■ 4.44
HIF1A-206ENST00000553999 NACADO15069 1562 aa42.54■■■■■ 4.4
HIF1A-206ENST00000553999 ZCCHC6Q5VYS8 1495 aaKnown RBP42.14■■■■■ 4.34
HIF1A-206ENST00000553999 MYO15BQ96JP2 1530 aa42.01■■■■■ 4.32
HIF1A-206ENST00000553999 PABPN1Q86U42 306 aaKnown RBP eCLIP41.89■■■■■ 4.3
HIF1A-206ENST00000553999 UNC13AQ9UPW8 1703 aa41.84■■■■■ 4.29
HIF1A-206ENST00000553999 DCAF1Q9Y4B6 1507 aa41.74■■■■■ 4.27
HIF1A-206ENST00000553999 BICRAQ9NZM4 1560 aa41.52■■■■■ 4.24
HIF1A-206ENST00000553999 DNAJC5BQ9UF47 199 aa41.5■■■■■ 4.23
HIF1A-206ENST00000553999 SCRIBQ14160 1630 aa41.44■■■■■ 4.22
HIF1A-206ENST00000553999 SHROOM4Q9ULL8 1493 aa40.81■■■■■ 4.12
HIF1A-206ENST00000553999 EIF4G1Q04637 1599 aaKnown RBP40.47■■■■■ 4.07
HIF1A-206ENST00000553999 CC2D2AQ9P2K1 1620 aa40.44■■■■■ 4.06
HIF1A-206ENST00000553999 CECR2Q9BXF3 1484 aa40.25■■■■■ 4.03
HIF1A-206ENST00000553999 SMARCA4P51532 1647 aa39.45■■■■□ 3.91
HIF1A-206ENST00000553999 ATAD2BQ9ULI0 1458 aa39.31■■■■□ 3.88
HIF1A-206ENST00000553999 BAZ1AQ9NRL2 1556 aaPredicted RBP39.29■■■■□ 3.88
HIF1A-206ENST00000553999 NCAPD3P42695 1498 aa39.26■■■■□ 3.88
HIF1A-206ENST00000553999 SMARCA2P51531 1590 aa39.2■■■■□ 3.87
HIF1A-206ENST00000553999 MROH2BQ7Z745 1585 aa39.15■■■■□ 3.86
HIF1A-206ENST00000553999 HMGXB3Q12766 1538 aa39.05■■■■□ 3.84
HIF1A-206ENST00000553999 BAZ1BQ9UIG0 1483 aaKnown RBP39.03■■■■□ 3.84
HIF1A-206ENST00000553999 PEG3Q9GZU2 1588 aa38.92■■■■□ 3.82
HIF1A-206ENST00000553999 WIZO95785 1651 aa38.74■■■■□ 3.79
HIF1A-206ENST00000553999 NESP48681 1621 aa38.69■■■■□ 3.78
HIF1A-206ENST00000553999 ERCC6Q03468 1493 aa38.66■■■■□ 3.78
HIF1A-206ENST00000553999 RSF1Q96T23 1441 aaPredicted RBP38.5■■■■□ 3.75
HIF1A-206ENST00000553999 LAMC3Q9Y6N6 1575 aa38.31■■■■□ 3.72
HIF1A-206ENST00000553999 TOP2AP11388 1531 aaKnown RBP38.22■■■■□ 3.71
HIF1A-206ENST00000553999 CUX2O14529 1486 aa38.2■■■■□ 3.71
HIF1A-206ENST00000553999 KIF21AQ7Z4S6 1674 aa38.17■■■■□ 3.7
HIF1A-206ENST00000553999 CADPSQ9ULU8 1353 aa38.16■■■■□ 3.7
HIF1A-206ENST00000553999 PDS5BQ9NTI5 1447 aa38.1■■■■□ 3.69
HIF1A-206ENST00000553999 THOC2Q8NI27 1593 aaKnown RBP38.08■■■■□ 3.69
HIF1A-206ENST00000553999 CFTRP13569 1480 aa37.83■■■■□ 3.65
HIF1A-206ENST00000553999 CCDC88BA6NC98 1476 aa37.8■■■■□ 3.64
HIF1A-206ENST00000553999 FANCD2Q9BXW9 1451 aa37.8■■■■□ 3.64
HIF1A-206ENST00000553999 MRC2Q9UBG0 1479 aa37.8■■■■□ 3.64
HIF1A-206ENST00000553999 CEP164Q9UPV0 1460 aa37.78■■■■□ 3.64
HIF1A-206ENST00000553999 WDR62O43379 1518 aa37.65■■■■□ 3.62
HIF1A-206ENST00000553999 DNAJC5Q9H3Z4 198 aa37.54■■■■□ 3.6
HIF1A-206ENST00000553999 PRDM2Q13029 1718 aa37.5■■■■□ 3.59
HIF1A-206ENST00000553999 URB2Q14146 1524 aaKnown RBP37.47■■■■□ 3.59
HIF1A-206ENST00000553999 SUPT5HO00267 1087 aaKnown RBP37.47■■■■□ 3.59
HIF1A-206ENST00000553999 TOPBP1Q92547 1522 aa37.15■■■■□ 3.54
HIF1A-206ENST00000553999 DNMBPQ6XZF7 1577 aa37.04■■■■□ 3.52
HIF1A-206ENST00000553999 ZNF608Q9ULD9 1512 aaPredicted RBP36.95■■■■□ 3.51
HIF1A-206ENST00000553999 IFT140Q96RY7 1462 aa36.95■■■■□ 3.51
HIF1A-206ENST00000553999 ABCC8Q09428 1581 aa36.95■■■■□ 3.51
HIF1A-206ENST00000553999 POLA1P09884 1462 aaPredicted RBP36.81■■■■□ 3.48
HIF1A-206ENST00000553999 EIF4G3O43432 1585 aaKnown RBP36.76■■■■□ 3.48
HIF1A-206ENST00000553999 RAD54L2Q9Y4B4 1467 aa36.75■■■■□ 3.47
HIF1A-206ENST00000553999 CUX1P39880 1505 aa36.75■■■■□ 3.47
HIF1A-206ENST00000553999 TARBP1Q13395 1621 aaKnown RBP36.73■■■■□ 3.47
HIF1A-206ENST00000553999 FGD5Q6ZNL6 1462 aa36.7■■■■□ 3.47
HIF1A-206ENST00000553999 AQRO60306 1485 aaKnown RBP eCLIP36.69■■■■□ 3.468e-7■■□□□ 11.7
HIF1A-206ENST00000553999 SOGA1O94964 1423 aa36.64■■■■□ 3.46
HIF1A-206ENST00000553999 OSCARQ8IYS5 282 aa36.61■■■■□ 3.45
HIF1A-206ENST00000553999 TDRD9Q8NDG6 1382 aaKnown RBP36.57■■■■□ 3.45
HIF1A-206ENST00000553999 FBLN2P98095 1184 aa36.43■■■■□ 3.42
HIF1A-206ENST00000553999 TRIM41Q8WV44 630 aa36.42■■■■□ 3.42
HIF1A-206ENST00000553999 CHD1O14646 1710 aa36.39■■■■□ 3.42
HIF1A-206ENST00000553999 WDR97A6NE52 1622 aa36.34■■■■□ 3.41
HIF1A-206ENST00000553999 SNAPC4Q5SXM2 1469 aa36.34■■■■□ 3.41
HIF1A-206ENST00000553999 WRNQ14191 1432 aaPredicted RBP eCLIP36.34■■■■□ 3.41
HIF1A-206ENST00000553999 SYNJ1O43426 1573 aa36.33■■■■□ 3.41
HIF1A-206ENST00000553999 TOP2BQ02880 1626 aa36.24■■■■□ 3.39
HIF1A-206ENST00000553999 BIVM-ERCC5R4GMW8 1640 aa36.24■■■■□ 3.39
HIF1A-206ENST00000553999 GRIN2BQ13224 1484 aa36.23■■■■□ 3.39
HIF1A-206ENST00000553999 GAPVD1Q14C86 1478 aa36.21■■■■□ 3.39
HIF1A-206ENST00000553999 ABCA10Q8WWZ4 1543 aa36.21■■■■□ 3.39
HIF1A-206ENST00000553999 PBRM1Q86U86 1689 aa36.19■■■■□ 3.38
HIF1A-206ENST00000553999 RIMBP3CA6NJZ7 1639 aa36.15■■■■□ 3.38
HIF1A-206ENST00000553999 RIMBP3BA6NNM3 1639 aa36.15■■■■□ 3.38
HIF1A-206ENST00000553999 RIMBP3Q9UFD9 1639 aa36.15■■■■□ 3.38
HIF1A-206ENST00000553999 ABCA5Q8WWZ7 1642 aa36.14■■■■□ 3.38
HIF1A-206ENST00000553999 MAGI1Q96QZ7 1491 aaPredicted RBP36.13■■■■□ 3.37
HIF1A-206ENST00000553999 CHMP7Q8WUX9 453 aaPredicted RBP36.13■■■■□ 3.37
HIF1A-206ENST00000553999 ARHGEF11O15085 1522 aa36.08■■■■□ 3.37
HIF1A-206ENST00000553999 SYNJ2O15056 1496 aa36.04■■■■□ 3.36
HIF1A-206ENST00000553999 CLASP1Q7Z460 1538 aa35.89■■■■□ 3.34
HIF1A-206ENST00000553999 ADAMTS12P58397 1594 aa35.87■■■■□ 3.33
HIF1A-206ENST00000553999 CYB5RLQ6IPT4 315 aa35.84■■■■□ 3.33
HIF1A-206ENST00000553999 GRIN2AQ12879 1464 aa35.79■■■■□ 3.32
HIF1A-206ENST00000553999 ARAP1Q96P48 1450 aa35.79■■■■□ 3.32
HIF1A-206ENST00000553999 ERICH3Q5RHP9 1530 aa35.74■■■■□ 3.31
HIF1A-206ENST00000553999 FHAD1B1AJZ9 1412 aa35.74■■■■□ 3.31
HIF1A-206ENST00000553999 CEP170Q5SW79 1584 aa35.68■■■■□ 3.3
HIF1A-206ENST00000553999 NUP160Q12769 1436 aa35.59■■■■□ 3.29
HIF1A-206ENST00000553999 KIF27Q86VH2 1401 aa35.57■■■■□ 3.29
HIF1A-206ENST00000553999 ERCC6L2Q5T890 1561 aa35.52■■■■□ 3.28
HIF1A-206ENST00000553999 IGF1RP08069 1367 aa35.46■■■■□ 3.27
HIF1A-206ENST00000553999 CUL7Q14999 1698 aa35.37■■■■□ 3.25
HIF1A-206ENST00000553999 SHROOM2Q13796 1616 aa35.35■■■■□ 3.25
HIF1A-206ENST00000553999 RUSC2Q8N2Y8 1516 aa35.35■■■■□ 3.25
HIF1A-206ENST00000553999 TRHP20396 242 aaPredicted RBP35.32■■■■□ 3.24
Retrieved 100 of 20,778 RNA–protein pairs in 7 ms