RNA–Protein interactions for RNA: ENST00000626028.1

SF1-220, Transcript of splicing factor 1, humanhuman

TSL 2 BASIC

Gene SF1, Length 704 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF1-220ENST00000626028 NISCHQ9Y2I1 1504 aa54.9■■■■■ 6.38
SF1-220ENST00000626028 CCDC180Q9P1Z9 1646 aa49.11■■■■■ 5.45
SF1-220ENST00000626028 ABCC9O60706 1549 aa48.02■■■■■ 5.28
SF1-220ENST00000626028 RB1CC1Q8TDY2 1594 aa46.27■■■■■ 5
SF1-220ENST00000626028 NACADO15069 1562 aa46.18■■■■■ 4.98
SF1-220ENST00000626028 MYO15BQ96JP2 1530 aa45.88■■■■■ 4.94
SF1-220ENST00000626028 DCAF8L2P0C7V8 631 aa45.75■■■■■ 4.91
SF1-220ENST00000626028 ZCCHC6Q5VYS8 1495 aaKnown RBP45.67■■■■■ 4.9
SF1-220ENST00000626028 DCAF1Q9Y4B6 1507 aa45.54■■■■■ 4.88
SF1-220ENST00000626028 UNC13AQ9UPW8 1703 aa45.27■■■■■ 4.84
SF1-220ENST00000626028 BICRAQ9NZM4 1560 aa44.82■■■■■ 4.76
SF1-220ENST00000626028 PABPN1Q86U42 306 aaKnown RBP eCLIP44.74■■■■■ 4.75
SF1-220ENST00000626028 SCRIBQ14160 1630 aa44.55■■■■■ 4.72
SF1-220ENST00000626028 SHROOM4Q9ULL8 1493 aa44.51■■■■■ 4.72
SF1-220ENST00000626028 DNAJC5BQ9UF47 199 aa44.27■■■■■ 4.68
SF1-220ENST00000626028 EIF4G1Q04637 1599 aaKnown RBP43.67■■■■■ 4.58
SF1-220ENST00000626028 CC2D2AQ9P2K1 1620 aa43.55■■■■■ 4.56
SF1-220ENST00000626028 CECR2Q9BXF3 1484 aa43.25■■■■■ 4.51
SF1-220ENST00000626028 SMARCA4P51532 1647 aa42.68■■■■■ 4.42
SF1-220ENST00000626028 BAZ1AQ9NRL2 1556 aaPredicted RBP42.62■■■■■ 4.41
SF1-220ENST00000626028 NCAPD3P42695 1498 aa42.55■■■■■ 4.4
SF1-220ENST00000626028 SMARCA2P51531 1590 aa42.51■■■■■ 4.4
SF1-220ENST00000626028 ATAD2BQ9ULI0 1458 aa42.47■■■■■ 4.39
SF1-220ENST00000626028 HMGXB3Q12766 1538 aa42.36■■■■■ 4.37
SF1-220ENST00000626028 PEG3Q9GZU2 1588 aa42.35■■■■■ 4.37
SF1-220ENST00000626028 MROH2BQ7Z745 1585 aa42.22■■■■■ 4.35
SF1-220ENST00000626028 BAZ1BQ9UIG0 1483 aaKnown RBP42.11■■■■■ 4.33
SF1-220ENST00000626028 WIZO95785 1651 aa41.8■■■■■ 4.28
SF1-220ENST00000626028 RSF1Q96T23 1441 aaPredicted RBP41.64■■■■■ 4.26
SF1-220ENST00000626028 LAMC3Q9Y6N6 1575 aa41.54■■■■■ 4.24
SF1-220ENST00000626028 ERCC6Q03468 1493 aa41.49■■■■■ 4.23
SF1-220ENST00000626028 NESP48681 1621 aa41.47■■■■■ 4.23
SF1-220ENST00000626028 TOP2AP11388 1531 aaKnown RBP41.38■■■■■ 4.21
SF1-220ENST00000626028 CUX2O14529 1486 aa41.27■■■■■ 4.2
SF1-220ENST00000626028 CADPSQ9ULU8 1353 aa41.25■■■■■ 4.19
SF1-220ENST00000626028 PDS5BQ9NTI5 1447 aa41.21■■■■■ 4.19
SF1-220ENST00000626028 KIF21AQ7Z4S6 1674 aa41.12■■■■■ 4.17
SF1-220ENST00000626028 THOC2Q8NI27 1593 aaKnown RBP41.04■■■■■ 4.16
SF1-220ENST00000626028 CFTRP13569 1480 aa40.97■■■■■ 4.15
SF1-220ENST00000626028 PRDM2Q13029 1718 aa40.84■■■■■ 4.13
SF1-220ENST00000626028 CCDC88BA6NC98 1476 aa40.82■■■■■ 4.12
SF1-220ENST00000626028 MRC2Q9UBG0 1479 aa40.77■■■■■ 4.12
SF1-220ENST00000626028 CEP164Q9UPV0 1460 aa40.77■■■■■ 4.12
SF1-220ENST00000626028 FANCD2Q9BXW9 1451 aa40.76■■■■■ 4.12
SF1-220ENST00000626028 WDR62O43379 1518 aa40.68■■■■■ 4.1
SF1-220ENST00000626028 URB2Q14146 1524 aaKnown RBP40.35■■■■■ 4.05
SF1-220ENST00000626028 DNAJC5Q9H3Z4 198 aa40.25■■■■■ 4.03
SF1-220ENST00000626028 ABCC8Q09428 1581 aa40.2■■■■■ 4.03
SF1-220ENST00000626028 SUPT5HO00267 1087 aaKnown RBP40.2■■■■■ 4.03
SF1-220ENST00000626028 TOPBP1Q92547 1522 aa40.08■■■■■ 4.01
SF1-220ENST00000626028 DNMBPQ6XZF7 1577 aa40.07■■■■■ 4.01
SF1-220ENST00000626028 IFT140Q96RY7 1462 aa39.94■■■■□ 3.98
SF1-220ENST00000626028 TARBP1Q13395 1621 aaKnown RBP39.73■■■■□ 3.95
SF1-220ENST00000626028 POLA1P09884 1462 aaPredicted RBP39.71■■■■□ 3.95
SF1-220ENST00000626028 ZNF608Q9ULD9 1512 aaPredicted RBP39.67■■■■□ 3.94
SF1-220ENST00000626028 CUX1P39880 1505 aa39.65■■■■□ 3.94
SF1-220ENST00000626028 EIF4G3O43432 1585 aaKnown RBP39.61■■■■□ 3.93
SF1-220ENST00000626028 FGD5Q6ZNL6 1462 aa39.56■■■■□ 3.92
SF1-220ENST00000626028 WDR97A6NE52 1622 aa39.54■■■■□ 3.92
SF1-220ENST00000626028 SOGA1O94964 1423 aa39.54■■■■□ 3.92
SF1-220ENST00000626028 RAD54L2Q9Y4B4 1467 aa39.46■■■■□ 3.91
SF1-220ENST00000626028 OSCARQ8IYS5 282 aa39.42■■■■□ 3.9
SF1-220ENST00000626028 AQRO60306 1485 aaKnown RBP eCLIP39.41■■■■□ 3.92e-11■■■■□ 19.9
SF1-220ENST00000626028 BIVM-ERCC5R4GMW8 1640 aa39.35■■■■□ 3.89
SF1-220ENST00000626028 TOP2BQ02880 1626 aa39.33■■■■□ 3.89
SF1-220ENST00000626028 WRNQ14191 1432 aaPredicted RBP eCLIP39.3■■■■□ 3.88
SF1-220ENST00000626028 TDRD9Q8NDG6 1382 aaKnown RBP39.27■■■■□ 3.88
SF1-220ENST00000626028 ABCA10Q8WWZ4 1543 aa39.23■■■■□ 3.87
SF1-220ENST00000626028 CHD1O14646 1710 aa39.21■■■■□ 3.87
SF1-220ENST00000626028 SYNJ1O43426 1573 aa39.21■■■■□ 3.87
SF1-220ENST00000626028 GRIN2BQ13224 1484 aa39.16■■■■□ 3.86
SF1-220ENST00000626028 MAGI1Q96QZ7 1491 aaPredicted RBP39.13■■■■□ 3.85
SF1-220ENST00000626028 PBRM1Q86U86 1689 aa39.13■■■■□ 3.85
SF1-220ENST00000626028 ABCA5Q8WWZ7 1642 aa39.12■■■■□ 3.85
SF1-220ENST00000626028 GAPVD1Q14C86 1478 aa39.11■■■■□ 3.85
SF1-220ENST00000626028 SNAPC4Q5SXM2 1469 aa39.07■■■■□ 3.85
SF1-220ENST00000626028 SYNJ2O15056 1496 aa38.95■■■■□ 3.83
SF1-220ENST00000626028 FBLN2P98095 1184 aa38.94■■■■□ 3.82
SF1-220ENST00000626028 CHMP7Q8WUX9 453 aaPredicted RBP38.88■■■■□ 3.81
SF1-220ENST00000626028 RIMBP3CA6NJZ7 1639 aa38.85■■■■□ 3.81
SF1-220ENST00000626028 RIMBP3BA6NNM3 1639 aa38.85■■■■□ 3.81
SF1-220ENST00000626028 RIMBP3Q9UFD9 1639 aa38.85■■■■□ 3.81
SF1-220ENST00000626028 ERICH3Q5RHP9 1530 aa38.8■■■■□ 3.8
SF1-220ENST00000626028 ARHGEF11O15085 1522 aa38.79■■■■□ 3.8
SF1-220ENST00000626028 CLASP1Q7Z460 1538 aa38.75■■■■□ 3.79
SF1-220ENST00000626028 ADAMTS12P58397 1594 aa38.74■■■■□ 3.79
SF1-220ENST00000626028 FHAD1B1AJZ9 1412 aa38.65■■■■□ 3.78
SF1-220ENST00000626028 GRIN2AQ12879 1464 aa38.64■■■■□ 3.78
SF1-220ENST00000626028 TRIM41Q8WV44 630 aa38.63■■■■□ 3.77
SF1-220ENST00000626028 KIF27Q86VH2 1401 aa38.53■■■■□ 3.76
SF1-220ENST00000626028 NUP160Q12769 1436 aa38.49■■■■□ 3.75
SF1-220ENST00000626028 CEP170Q5SW79 1584 aa38.44■■■■□ 3.74
SF1-220ENST00000626028 CUL7Q14999 1698 aa38.44■■■■□ 3.74
SF1-220ENST00000626028 ARAP1Q96P48 1450 aa38.41■■■■□ 3.74
SF1-220ENST00000626028 IGF1RP08069 1367 aa38.35■■■■□ 3.73
SF1-220ENST00000626028 CYB5RLQ6IPT4 315 aa38.34■■■■□ 3.73
SF1-220ENST00000626028 SHROOM2Q13796 1616 aa38.31■■■■□ 3.72
SF1-220ENST00000626028 RUSC2Q8N2Y8 1516 aa38.18■■■■□ 3.7
SF1-220ENST00000626028 CARMIL1Q5VZK9 1371 aa38.13■■■■□ 3.69
SF1-220ENST00000626028 KIAA0586Q9BVV6 1533 aa38.07■■■■□ 3.69
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms