Protein–RNA interactions for Protein: O75533

SF3B1, Splicing factor 3B subunit 1, humanhuman

Known RBP eCLIP

Length 1,304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1O75533 WDTC1-204ENST00000472249 628 ntTSL 518.92■□□□□ 0.622e-9■■■■□ 25.8
SF3B1O75533 KRIT1-210ENST00000430102 702 ntTSL 318.91■□□□□ 0.622e-9■■■■□ 25.8
SF3B1O75533 KCNN4-206ENST00000600408 648 ntTSL 218.91■□□□□ 0.621e-6■■■■□ 25.8
SF3B1O75533 OSBPL2-209ENST00000620616 2099 ntTSL 518.74■□□□□ 0.591e-6■■■■□ 25.8
SF3B1O75533 SNX2-211ENST00000512394 763 ntTSL 318.72■□□□□ 0.592e-9■■■■□ 25.8
SF3B1O75533 WDTC1-201ENST00000319394 4819 ntAPPRIS ALT1 TSL 1 (best) BASIC18.62■□□□□ 0.572e-9■■■■□ 25.8
SF3B1O75533 SAFB2-204ENST00000589925 506 ntTSL 318.33■□□□□ 0.531e-6■■■■□ 25.8
SF3B1O75533 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC18.31■□□□□ 0.521e-6■■■■□ 25.8
SF3B1O75533 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC18.08■□□□□ 0.482e-9■■■■□ 25.8
SF3B1O75533 WDR26-208ENST00000486652 2867 ntTSL 1 (best)18.03■□□□□ 0.482e-9■■■■□ 25.8
SF3B1O75533 OLA1-201ENST00000284719 4417 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.41e-6■■■■□ 25.8
SF3B1O75533 OLA1-202ENST00000344357 1656 ntTSL 2 BASIC17.31■□□□□ 0.361e-6■■■■□ 25.8
SF3B1O75533 NUS1-201ENST00000368494 4676 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.241e-6■■■■□ 25.8
SF3B1O75533 SNX2-203ENST00000505934 819 ntTSL 216.45■□□□□ 0.222e-9■■■■□ 25.8
SF3B1O75533 WDTC1-202ENST00000361771 4275 ntAPPRIS P3 TSL 1 (best) BASIC15.93■□□□□ 0.142e-9■■■■□ 25.8
SF3B1O75533 UBA6-202ENST00000420827 1664 ntTSL 1 (best) BASIC15.75■□□□□ 0.111e-6■■■■□ 25.8
SF3B1O75533 SNX2-201ENST00000379516 2128 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.082e-9■■■■□ 25.8
SF3B1O75533 KRIT1-217ENST00000458177 1472 ntTSL 1 (best)15.15■□□□□ 0.022e-9■■■■□ 25.8
SF3B1O75533 UBA6-203ENST00000429659 2387 ntTSL 214.19□□□□□ -0.141e-6■■■■□ 25.8
SF3B1O75533 RPL37-206ENST00000511787 435 ntTSL 314.13□□□□□ -0.151e-6■■■■□ 25.8
SF3B1O75533 LINC01029-202ENST00000578833 366 ntTSL 3 BASIC14.06□□□□□ -0.161e-6■■■■□ 25.8
SF3B1O75533 TUBGCP4-201ENST00000260383 2617 ntAPPRIS ALT1 TSL 1 (best) BASIC13.87□□□□□ -0.191e-6■■■■□ 25.8
SF3B1O75533 KRIT1-211ENST00000433016 855 ntTSL 513.66□□□□□ -0.222e-9■■■■□ 25.8
SF3B1O75533 KRIT1-219ENST00000466166 545 ntTSL 413.66□□□□□ -0.222e-9■■■■□ 25.8
SF3B1O75533 WDTC1-205ENST00000491239 5149 ntTSL 213.63□□□□□ -0.232e-9■■■■□ 25.8
SF3B1O75533 OSBPL2-210ENST00000621075 2838 ntTSL 213.4□□□□□ -0.261e-6■■■■□ 25.8
SF3B1O75533 AP3D1-203ENST00000585652 4433 ntTSL 213.24□□□□□ -0.295e-6■■■■□ 25.8
SF3B1O75533 WDTC1-203ENST00000447062 3115 ntTSL 213.16□□□□□ -0.32e-9■■■■□ 25.8
SF3B1O75533 WDR26-201ENST00000414423 6872 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.322e-9■■■■□ 25.8
SF3B1O75533 KRIT1-212ENST00000440209 557 ntTSL 412.77□□□□□ -0.372e-9■■■■□ 25.8
SF3B1O75533 KCNN4-202ENST00000597184 631 ntTSL 212.55□□□□□ -0.41e-6■■■■□ 25.8
SF3B1O75533 TUBGCP4-208ENST00000564079 6798 ntAPPRIS P3 TSL 1 (best) BASIC12.46□□□□□ -0.411e-6■■■■□ 25.8
SF3B1O75533 KRIT1-205ENST00000412043 3378 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.452e-9■■■■□ 25.8
SF3B1O75533 KRIT1-201ENST00000340022 4553 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.472e-9■■■■□ 25.8
SF3B1O75533 AP3D1-206ENST00000589223 3357 ntTSL 212.03□□□□□ -0.485e-6■■■■□ 25.8
SF3B1O75533 PNN-203ENST00000554117 624 ntTSL 211.86□□□□□ -0.511e-6■■■■□ 25.8
SF3B1O75533 KRIT1-213ENST00000444960 783 ntTSL 411.13□□□□□ -0.632e-9■■■■□ 25.8
SF3B1O75533 WTAP-202ENST00000358372 3656 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.631e-6■■■■□ 25.8
SF3B1O75533 TUBGCP4-202ENST00000561691 1928 ntTSL 1 (best)10.54□□□□□ -0.721e-6■■■■□ 25.8
SF3B1O75533 KRIT1-206ENST00000413688 551 ntTSL 410.34□□□□□ -0.752e-9■■■■□ 25.8
SF3B1O75533 KRIT1-216ENST00000454017 978 ntTSL 310.34□□□□□ -0.752e-9■■■■□ 25.8
SF3B1O75533 KRIT1-208ENST00000425073 546 ntTSL 410.08□□□□□ -0.82e-9■■■■□ 25.8
SF3B1O75533 KRIT1-202ENST00000394503 2827 ntTSL 2 BASIC9.8□□□□□ -0.842e-9■■■■□ 25.8
SF3B1O75533 KRIT1-204ENST00000394507 4762 ntAPPRIS P1 TSL 5 BASIC9.58□□□□□ -0.882e-9■■■■□ 25.8
SF3B1O75533 CLASP1-212ENST00000480007 569 ntTSL 49.38□□□□□ -0.912e-9■■■■□ 25.8
SF3B1O75533 PPP2R5C-208ENST00000553842 421 ntTSL 39.35□□□□□ -0.911e-6■■■■□ 25.8
SF3B1O75533 SETD2-208ENST00000492397 746 ntTSL 39.24□□□□□ -0.931e-6■■■■□ 25.8
SF3B1O75533 UAP1-202ENST00000367924 2066 ntAPPRIS ALT1 TSL 5 BASIC9.15□□□□□ -0.951e-6■■■■□ 25.8
SF3B1O75533 NXF1-212ENST00000531872 390 ntTSL 58.7□□□□□ -1.021e-6■■■■□ 25.8
SF3B1O75533 OLA1-206ENST00000428402 1270 ntTSL 1 (best) BASIC8.62□□□□□ -1.031e-6■■■■□ 25.8
SF3B1O75533 PPP2R5C-220ENST00000556373 285 ntTSL 58.43□□□□□ -1.061e-6■■■■□ 25.8
SF3B1O75533 KRIT1-203ENST00000394505 3143 ntAPPRIS P1 TSL 1 (best) BASIC8.29□□□□□ -1.082e-9■■■■□ 25.8
SF3B1O75533 CLASP1-211ENST00000474065 516 ntTSL 38.14□□□□□ -1.112e-9■■■■□ 25.8
SF3B1O75533 CNOT1-218ENST00000569732 906 ntTSL 37.77□□□□□ -1.171e-6■■■■□ 25.8
SF3B1O75533 UAP1-203ENST00000367925 2069 ntAPPRIS ALT1 TSL 5 BASIC7.75□□□□□ -1.171e-6■■■■□ 25.8
SF3B1O75533 PNN-201ENST00000216832 3576 ntAPPRIS P1 TSL 1 (best) BASIC7.72□□□□□ -1.171e-6■■■■□ 25.8
SF3B1O75533 TXNIP-203ENST00000488537 1509 ntTSL 57.65□□□□□ -1.183e-6■■■■□ 25.8
SF3B1O75533 TMEM165-211ENST00000515591 1786 ntTSL 27.46□□□□□ -1.221e-6■■■■□ 25.8
SF3B1O75533 CLASP1-205ENST00000430234 582 ntTSL 47.46□□□□□ -1.222e-9■■■■□ 25.8
SF3B1O75533 WDR26-202ENST00000443112 1306 ntTSL 1 (best)7.45□□□□□ -1.222e-9■■■■□ 25.8
SF3B1O75533 TUBGCP4-205ENST00000563412 561 ntTSL 56.78□□□□□ -1.321e-6■■■■□ 25.8
SF3B1O75533 PPP2R5C-221ENST00000556493 457 ntTSL 46.25□□□□□ -1.411e-6■■■■□ 25.8
SF3B1O75533 CLASP1-204ENST00000418989 663 ntTSL 46.17□□□□□ -1.422e-9■■■■□ 25.8
SF3B1O75533 WDR26-203ENST00000445239 784 ntTSL 56.05□□□□□ -1.442e-9■■■■□ 25.8
SF3B1O75533 TUBGCP4-209ENST00000564511 588 ntTSL 35.71□□□□□ -1.51e-6■■■■□ 25.8
SF3B1O75533 CLASP1-206ENST00000449975 555 ntTSL 44.75□□□□□ -1.652e-9■■■■□ 25.8
SF3B1O75533 WDR26-204ENST00000477425 529 ntTSL 34.68□□□□□ -1.662e-9■■■■□ 25.8
SF3B1O75533 TRIM33-203ENST00000448034 2706 ntTSL 54.63□□□□□ -1.671e-6■■■■□ 25.8
SF3B1O75533 LINC02456-201ENST00000635615 1323 ntTSL 5 BASIC4.62□□□□□ -1.671e-6■■■■□ 25.8
SF3B1O75533 ZBTB37-201ENST00000367701 19128 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.781e-6■■■■□ 25.8
SF3B1O75533 KRIT1-218ENST00000458493 507 ntTSL 43.71□□□□□ -1.812e-9■■■■□ 25.8
SF3B1O75533 SNX2-209ENST00000510372 1412 ntTSL 23.56□□□□□ -1.842e-9■■■■□ 25.8
SF3B1O75533 WDR26-209ENST00000489825 751 ntTSL 53.5□□□□□ -1.852e-9■■■■□ 25.8
SF3B1O75533 SNX2-210ENST00000511365 555 ntTSL 53.49□□□□□ -1.852e-9■■■■□ 25.8
SF3B1O75533 CNOT1-203ENST00000562046 578 ntTSL 53.27□□□□□ -1.891e-6■■■■□ 25.8
SF3B1O75533 KRIT1-207ENST00000422347 483 ntTSL 52.94□□□□□ -1.942e-9■■■■□ 25.8
SF3B1O75533 KRIT1-209ENST00000425919 572 ntTSL 52.94□□□□□ -1.942e-9■■■■□ 25.8
SF3B1O75533 MIR3618-201ENST00000580330 88 ntBASIC1.84□□□□□ -2.121e-6■■■■□ 25.8
SF3B1O75533 DLG1-222ENST00000470629 416 ntTSL 31.59□□□□□ -2.161e-6■■■■□ 25.8
SF3B1O75533 GABRE-201ENST00000370328 3152 ntAPPRIS P1 TSL 1 (best) BASIC8.27□□□□□ -1.091e-6■■■■□ 25.8
SF3B1O75533 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC21.6■■□□□ 1.052e-6■■■■□ 25.8
SF3B1O75533 RPL17-202ENST00000578532 684 ntTSL 220.91■□□□□ 0.942e-6■■■■□ 25.8
SF3B1O75533 RPL17-218ENST00000583637 758 ntTSL 320.91■□□□□ 0.942e-6■■■■□ 25.8
SF3B1O75533 RPL17-209ENST00000580387 827 ntTSL 518.79■□□□□ 0.62e-6■■■■□ 25.8
SF3B1O75533 RPL17-223ENST00000618613 856 ntAPPRIS P1 TSL 318.55■□□□□ 0.562e-6■■■■□ 25.8
SF3B1O75533 RPL17-221ENST00000615760 650 ntTSL 318.49■□□□□ 0.552e-6■■■■□ 25.8
SF3B1O75533 RPL17-C18orf32-201ENST00000332968 948 ntTSL 5 BASIC13.13□□□□□ -0.312e-6■■■■□ 25.8
SF3B1O75533 RPL17-220ENST00000615479 586 ntTSL 512.72□□□□□ -0.372e-6■■■■□ 25.8
SF3B1O75533 RPL17-224ENST00000618619 747 ntAPPRIS P1 TSL 5 BASIC11.5□□□□□ -0.572e-6■■■■□ 25.8
SF3B1O75533 RPL17-222ENST00000617346 795 ntTSL 511.46□□□□□ -0.572e-6■■■■□ 25.8
SF3B1O75533 RPL17-207ENST00000580210 705 ntTSL 2 BASIC10.74□□□□□ -0.692e-6■■■■□ 25.8
SF3B1O75533 RPL17-205ENST00000579408 859 ntAPPRIS P1 TSL 1 (best) BASIC10.53□□□□□ -0.722e-6■■■■□ 25.8
SF3B1O75533 RPL17-212ENST00000581373 584 ntTSL 2 BASIC9.52□□□□□ -0.892e-6■■■■□ 25.8
SF3B1O75533 RPL17-208ENST00000580261 669 ntAPPRIS P1 TSL 1 (best) BASIC7.74□□□□□ -1.172e-6■■■■□ 25.8
SF3B1O75533 RPL17-217ENST00000583036 576 ntTSL 36.95□□□□□ -1.32e-6■■■■□ 25.8
SF3B1O75533 XPO1-209ENST00000443240 565 ntTSL 43.16□□□□□ -1.96e-7■■■■□ 25.8
SF3B1O75533 MTHFR-211ENST00000641437 1911 nt17.13■□□□□ 0.335e-6■■■■□ 25.8
SF3B1O75533 MTHFR-218ENST00000641909 2254 nt15.41■□□□□ 0.065e-6■■■■□ 25.8
SF3B1O75533 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.632e-8■■■■□ 25.8
SF3B1O75533 RPS12-202ENST00000484616 639 ntTSL 23.99□□□□□ -1.772e-8■■■■□ 25.8
Retrieved 100 of 46,956 protein–RNA pairs in 2854.6 ms