RNA–Protein interactions for RNA: ENST00000554117.1

PNN-203, Transcript of pinin, desmosome associated protein, humanhuman

TSL 2

Gene PNN, Length 624 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNN-203ENST00000554117 NISCHQ9Y2I1 1504 aa26.53■■□□□ 1.84
PNN-203ENST00000554117 CCDC180Q9P1Z9 1646 aa24■■□□□ 1.43
PNN-203ENST00000554117 ABCC9O60706 1549 aa23.61■■□□□ 1.37
PNN-203ENST00000554117 RB1CC1Q8TDY2 1594 aa22.72■■□□□ 1.23
PNN-203ENST00000554117 NACADO15069 1562 aa22.54■■□□□ 1.2
PNN-203ENST00000554117 DCAF8L2P0C7V8 631 aa22.37■■□□□ 1.17
PNN-203ENST00000554117 UNC13AQ9UPW8 1703 aa22.32■■□□□ 1.16
PNN-203ENST00000554117 MYO15BQ96JP2 1530 aa22.2■■□□□ 1.14
PNN-203ENST00000554117 ZCCHC6Q5VYS8 1495 aaKnown RBP22■■□□□ 1.11
PNN-203ENST00000554117 DCAF1Q9Y4B6 1507 aa21.96■■□□□ 1.11
PNN-203ENST00000554117 PABPN1Q86U42 306 aaKnown RBP eCLIP21.89■■□□□ 1.09
PNN-203ENST00000554117 BICRAQ9NZM4 1560 aa21.86■■□□□ 1.09
PNN-203ENST00000554117 DNAJC5BQ9UF47 199 aa21.77■■□□□ 1.08
PNN-203ENST00000554117 SCRIBQ14160 1630 aa21.75■■□□□ 1.07
PNN-203ENST00000554117 SHROOM4Q9ULL8 1493 aa21.71■■□□□ 1.07
PNN-203ENST00000554117 CC2D2AQ9P2K1 1620 aa21.44■■□□□ 1.02
PNN-203ENST00000554117 EIF4G1Q04637 1599 aaKnown RBP21.4■■□□□ 1.02
PNN-203ENST00000554117 CECR2Q9BXF3 1484 aa21.27■■□□□ 1
PNN-203ENST00000554117 SMARCA4P51532 1647 aa20.77■□□□□ 0.92
PNN-203ENST00000554117 SMARCA2P51531 1590 aa20.73■□□□□ 0.91
PNN-203ENST00000554117 BAZ1AQ9NRL2 1556 aaPredicted RBP20.69■□□□□ 0.9
PNN-203ENST00000554117 NCAPD3P42695 1498 aa20.65■□□□□ 0.9
PNN-203ENST00000554117 HMGXB3Q12766 1538 aa20.64■□□□□ 0.9
PNN-203ENST00000554117 ATAD2BQ9ULI0 1458 aa20.61■□□□□ 0.89
PNN-203ENST00000554117 BAZ1BQ9UIG0 1483 aaKnown RBP20.54■□□□□ 0.88
PNN-203ENST00000554117 PEG3Q9GZU2 1588 aa20.51■□□□□ 0.87
PNN-203ENST00000554117 ERCC6Q03468 1493 aa20.51■□□□□ 0.87
PNN-203ENST00000554117 MROH2BQ7Z745 1585 aa20.38■□□□□ 0.85
PNN-203ENST00000554117 CUX2O14529 1486 aa20.38■□□□□ 0.85
PNN-203ENST00000554117 LAMC3Q9Y6N6 1575 aa20.36■□□□□ 0.85
PNN-203ENST00000554117 WIZO95785 1651 aa20.29■□□□□ 0.84
PNN-203ENST00000554117 KIF21AQ7Z4S6 1674 aa20.28■□□□□ 0.84
PNN-203ENST00000554117 NESP48681 1621 aa20.27■□□□□ 0.83
PNN-203ENST00000554117 THOC2Q8NI27 1593 aaKnown RBP20.18■□□□□ 0.82
PNN-203ENST00000554117 PDS5BQ9NTI5 1447 aa20.16■□□□□ 0.82
PNN-203ENST00000554117 PRDM2Q13029 1718 aa20.1■□□□□ 0.81
PNN-203ENST00000554117 DNAJC5Q9H3Z4 198 aa20.06■□□□□ 0.8
PNN-203ENST00000554117 CADPSQ9ULU8 1353 aa20.04■□□□□ 0.8
PNN-203ENST00000554117 TOP2AP11388 1531 aaKnown RBP20.02■□□□□ 0.79
PNN-203ENST00000554117 RSF1Q96T23 1441 aaPredicted RBP19.96■□□□□ 0.79
PNN-203ENST00000554117 MRC2Q9UBG0 1479 aa19.95■□□□□ 0.78
PNN-203ENST00000554117 CEP164Q9UPV0 1460 aa19.94■□□□□ 0.78
PNN-203ENST00000554117 WDR62O43379 1518 aa19.91■□□□□ 0.78
PNN-203ENST00000554117 FANCD2Q9BXW9 1451 aa19.86■□□□□ 0.77
PNN-203ENST00000554117 CFTRP13569 1480 aa19.84■□□□□ 0.77
PNN-203ENST00000554117 CCDC88BA6NC98 1476 aa19.69■□□□□ 0.74
PNN-203ENST00000554117 URB2Q14146 1524 aaKnown RBP19.63■□□□□ 0.73
PNN-203ENST00000554117 ABCC8Q09428 1581 aa19.6■□□□□ 0.73
PNN-203ENST00000554117 DNMBPQ6XZF7 1577 aa19.53■□□□□ 0.72
PNN-203ENST00000554117 IFT140Q96RY7 1462 aa19.5■□□□□ 0.71
PNN-203ENST00000554117 TOPBP1Q92547 1522 aa19.5■□□□□ 0.71
PNN-203ENST00000554117 EIF4G3O43432 1585 aaKnown RBP19.43■□□□□ 0.7
PNN-203ENST00000554117 OSCARQ8IYS5 282 aa19.42■□□□□ 0.7
PNN-203ENST00000554117 CHD1O14646 1710 aa19.39■□□□□ 0.69
PNN-203ENST00000554117 TARBP1Q13395 1621 aaKnown RBP19.36■□□□□ 0.69
PNN-203ENST00000554117 ZNF608Q9ULD9 1512 aaPredicted RBP19.34■□□□□ 0.69
PNN-203ENST00000554117 TRIM41Q8WV44 630 aa19.33■□□□□ 0.68
PNN-203ENST00000554117 WDR97A6NE52 1622 aa19.32■□□□□ 0.68
PNN-203ENST00000554117 POLA1P09884 1462 aaPredicted RBP19.28■□□□□ 0.68
PNN-203ENST00000554117 SUPT5HO00267 1087 aaKnown RBP19.25■□□□□ 0.67
PNN-203ENST00000554117 RIMBP3CA6NJZ7 1639 aa19.25■□□□□ 0.67
PNN-203ENST00000554117 RIMBP3BA6NNM3 1639 aa19.25■□□□□ 0.67
PNN-203ENST00000554117 RIMBP3Q9UFD9 1639 aa19.25■□□□□ 0.67
PNN-203ENST00000554117 PBRM1Q86U86 1689 aa19.24■□□□□ 0.67
PNN-203ENST00000554117 FGD5Q6ZNL6 1462 aa19.22■□□□□ 0.67
PNN-203ENST00000554117 SOGA1O94964 1423 aa19.21■□□□□ 0.67
PNN-203ENST00000554117 AQRO60306 1485 aaKnown RBP eCLIP19.19■□□□□ 0.663e-18■■■■■ 28.6
PNN-203ENST00000554117 CUX1P39880 1505 aa19.17■□□□□ 0.66
PNN-203ENST00000554117 RAD54L2Q9Y4B4 1467 aa19.16■□□□□ 0.66
PNN-203ENST00000554117 FBLN2P98095 1184 aa19.15■□□□□ 0.66
PNN-203ENST00000554117 ARHGEF11O15085 1522 aa19.12■□□□□ 0.65
PNN-203ENST00000554117 SYNJ1O43426 1573 aa19.1■□□□□ 0.65
PNN-203ENST00000554117 MAGI1Q96QZ7 1491 aaPredicted RBP19.09■□□□□ 0.65
PNN-203ENST00000554117 TDRD9Q8NDG6 1382 aaKnown RBP19.08■□□□□ 0.65
PNN-203ENST00000554117 BIVM-ERCC5R4GMW8 1640 aa19.08■□□□□ 0.65
PNN-203ENST00000554117 SNAPC4Q5SXM2 1469 aa19.08■□□□□ 0.64
PNN-203ENST00000554117 GRIN2BQ13224 1484 aa19.07■□□□□ 0.64
PNN-203ENST00000554117 CHMP7Q8WUX9 453 aaPredicted RBP19.03■□□□□ 0.64
PNN-203ENST00000554117 ABCA5Q8WWZ7 1642 aa19.03■□□□□ 0.64
PNN-203ENST00000554117 GAPVD1Q14C86 1478 aa19.03■□□□□ 0.64
PNN-203ENST00000554117 TOP2BQ02880 1626 aa19.02■□□□□ 0.64
PNN-203ENST00000554117 ABCA10Q8WWZ4 1543 aa19■□□□□ 0.63
PNN-203ENST00000554117 SYNJ2O15056 1496 aa18.99■□□□□ 0.63
PNN-203ENST00000554117 WRNQ14191 1432 aaPredicted RBP eCLIP18.97■□□□□ 0.63
PNN-203ENST00000554117 CLASP1Q7Z460 1538 aa18.95■□□□□ 0.62
PNN-203ENST00000554117 CYB5RLQ6IPT4 315 aa18.92■□□□□ 0.62
PNN-203ENST00000554117 ARAP1Q96P48 1450 aa18.88■□□□□ 0.61
PNN-203ENST00000554117 ADAMTS12P58397 1594 aa18.88■□□□□ 0.61
PNN-203ENST00000554117 ERICH3Q5RHP9 1530 aa18.84■□□□□ 0.61
PNN-203ENST00000554117 GRIN2AQ12879 1464 aa18.82■□□□□ 0.6
PNN-203ENST00000554117 TRHP20396 242 aaPredicted RBP18.78■□□□□ 0.6
PNN-203ENST00000554117 FHAD1B1AJZ9 1412 aa18.76■□□□□ 0.59
PNN-203ENST00000554117 CEP170Q5SW79 1584 aa18.74■□□□□ 0.59
PNN-203ENST00000554117 CUL7Q14999 1698 aa18.73■□□□□ 0.59
PNN-203ENST00000554117 SHROOM2Q13796 1616 aa18.71■□□□□ 0.58
PNN-203ENST00000554117 NUP160Q12769 1436 aa18.67■□□□□ 0.58
PNN-203ENST00000554117 KIF27Q86VH2 1401 aa18.62■□□□□ 0.57
PNN-203ENST00000554117 RUSC2Q8N2Y8 1516 aa18.61■□□□□ 0.57
PNN-203ENST00000554117 ERCC6L2Q5T890 1561 aa18.59■□□□□ 0.57
PNN-203ENST00000554117 AEBP2Q6ZN18 517 aaPredicted RBP18.53■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 7.1 ms