RNA–Protein interactions for RNA: ENST00000379516.6

SNX2-201, Transcript of sorting nexin 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNX2, Length 2,128 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX2-201ENST00000379516 NISCHQ9Y2I1 1504 aa33.19■■■□□ 2.9
SNX2-201ENST00000379516 CCDC180Q9P1Z9 1646 aa28.67■■■□□ 2.18
SNX2-201ENST00000379516 ZCCHC6Q5VYS8 1495 aaKnown RBP27.93■■■□□ 2.06
SNX2-201ENST00000379516 DCAF8L2P0C7V8 631 aa27.55■■■□□ 2
SNX2-201ENST00000379516 SHROOM4Q9ULL8 1493 aa27.51■■□□□ 1.99
SNX2-201ENST00000379516 DCAF1Q9Y4B6 1507 aa27.35■■□□□ 1.97
SNX2-201ENST00000379516 ABCC9O60706 1549 aa27.02■■□□□ 1.92
SNX2-201ENST00000379516 MYO15BQ96JP2 1530 aa26.89■■□□□ 1.89
SNX2-201ENST00000379516 NACADO15069 1562 aa26.68■■□□□ 1.86
SNX2-201ENST00000379516 SUPT5HO00267 1087 aaKnown RBP26.65■■□□□ 1.86
SNX2-201ENST00000379516 SCRIBQ14160 1630 aa26.57■■□□□ 1.84
SNX2-201ENST00000379516 RB1CC1Q8TDY2 1594 aa26.39■■□□□ 1.82
SNX2-201ENST00000379516 RSF1Q96T23 1441 aaPredicted RBP25.92■■□□□ 1.74
SNX2-201ENST00000379516 UNC13AQ9UPW8 1703 aa25.84■■□□□ 1.73
SNX2-201ENST00000379516 CECR2Q9BXF3 1484 aa25.84■■□□□ 1.73
SNX2-201ENST00000379516 MROH2BQ7Z745 1585 aa25.7■■□□□ 1.7
SNX2-201ENST00000379516 PABPN1Q86U42 306 aaKnown RBP eCLIP25.63■■□□□ 1.69
SNX2-201ENST00000379516 CHIC1Q5VXU3 224 aa25.61■■□□□ 1.69
SNX2-201ENST00000379516 BICRAQ9NZM4 1560 aa25.61■■□□□ 1.69
SNX2-201ENST00000379516 BAZ1AQ9NRL2 1556 aaPredicted RBP25.58■■□□□ 1.69
SNX2-201ENST00000379516 WIZO95785 1651 aa25.5■■□□□ 1.67
SNX2-201ENST00000379516 SMARCA4P51532 1647 aa25.43■■□□□ 1.66
SNX2-201ENST00000379516 TOP2AP11388 1531 aaKnown RBP25.19■■□□□ 1.62
SNX2-201ENST00000379516 PEG3Q9GZU2 1588 aa25.05■■□□□ 1.6
SNX2-201ENST00000379516 CCDC88BA6NC98 1476 aa25.01■■□□□ 1.59
SNX2-201ENST00000379516 SMARCA2P51531 1590 aa24.99■■□□□ 1.59
SNX2-201ENST00000379516 TRIM41Q8WV44 630 aa24.98■■□□□ 1.59
SNX2-201ENST00000379516 ATAD2BQ9ULI0 1458 aa24.96■■□□□ 1.59
SNX2-201ENST00000379516 EIF4G1Q04637 1599 aaKnown RBP24.87■■□□□ 1.57
SNX2-201ENST00000379516 BAZ1BQ9UIG0 1483 aaKnown RBP24.85■■□□□ 1.57
SNX2-201ENST00000379516 LOC105371045A0A1W2PR82 267 aa24.73■■□□□ 1.55
SNX2-201ENST00000379516 NCAPD3P42695 1498 aa24.66■■□□□ 1.54
SNX2-201ENST00000379516 ABCC8Q09428 1581 aa24.62■■□□□ 1.53
SNX2-201ENST00000379516 HMGXB3Q12766 1538 aa24.62■■□□□ 1.53
SNX2-201ENST00000379516 FAM9AQ8IZU1 332 aaPredicted RBP24.61■■□□□ 1.53
SNX2-201ENST00000379516 WRNQ14191 1432 aaPredicted RBP eCLIP24.39■■□□□ 1.5
SNX2-201ENST00000379516 CC2D2AQ9P2K1 1620 aa24.39■■□□□ 1.49
SNX2-201ENST00000379516 EHMT2Q96KQ7 1210 aa24.33■■□□□ 1.49
SNX2-201ENST00000379516 SYNJ1O43426 1573 aa24.26■■□□□ 1.47
SNX2-201ENST00000379516 SOGA1O94964 1423 aa24.25■■□□□ 1.47
SNX2-201ENST00000379516 CFTRP13569 1480 aa24.22■■□□□ 1.47
SNX2-201ENST00000379516 EEA1Q15075 1411 aa24.16■■□□□ 1.46
SNX2-201ENST00000379516 RUSC2Q8N2Y8 1516 aa24.14■■□□□ 1.45
SNX2-201ENST00000379516 CSRNP3Q8WYN3 585 aa24.11■■□□□ 1.45
SNX2-201ENST00000379516 CADPSQ9ULU8 1353 aa24.1■■□□□ 1.45
SNX2-201ENST00000379516 TOP2BQ02880 1626 aa24.09■■□□□ 1.45
SNX2-201ENST00000379516 BIVM-ERCC5R4GMW8 1640 aa24.03■■□□□ 1.44
SNX2-201ENST00000379516 PRDM2Q13029 1718 aa23.99■■□□□ 1.43
SNX2-201ENST00000379516 CUX1P39880 1505 aa23.99■■□□□ 1.43
SNX2-201ENST00000379516 PCGF6Q9BYE7 350 aa23.95■■□□□ 1.42
SNX2-201ENST00000379516 UBTFP17480 764 aaKnown RBP23.89■■□□□ 1.41
SNX2-201ENST00000379516 TNIKQ9UKE5 1360 aa23.88■■□□□ 1.41
SNX2-201ENST00000379516 GOLGA3Q08378 1498 aa23.88■■□□□ 1.41
SNX2-201ENST00000379516 CEP164Q9UPV0 1460 aa23.85■■□□□ 1.41
SNX2-201ENST00000379516 FANCD2Q9BXW9 1451 aa23.84■■□□□ 1.41
SNX2-201ENST00000379516 DNAJC5BQ9UF47 199 aa23.83■■□□□ 1.4
SNX2-201ENST00000379516 NESP48681 1621 aa23.83■■□□□ 1.4
SNX2-201ENST00000379516 CEP162Q5TB80 1403 aa23.81■■□□□ 1.4
SNX2-201ENST00000379516 KIF21BO75037 1637 aa23.81■■□□□ 1.4
SNX2-201ENST00000379516 TRIM26Q12899 539 aaPredicted RBP23.79■■□□□ 1.4
SNX2-201ENST00000379516 LAMC3Q9Y6N6 1575 aa23.74■■□□□ 1.39
SNX2-201ENST00000379516 KIF27Q86VH2 1401 aa23.74■■□□□ 1.39
SNX2-201ENST00000379516 RAPGEF2Q9Y4G8 1499 aa23.71■■□□□ 1.39
SNX2-201ENST00000379516 FGD5Q6ZNL6 1462 aa23.69■■□□□ 1.38
SNX2-201ENST00000379516 PRXQ9BXM0 1461 aa23.64■■□□□ 1.37
SNX2-201ENST00000379516 DNMBPQ6XZF7 1577 aa23.63■■□□□ 1.37
SNX2-201ENST00000379516 CUX2O14529 1486 aa23.62■■□□□ 1.37
SNX2-201ENST00000379516 PDS5BQ9NTI5 1447 aa23.61■■□□□ 1.37
SNX2-201ENST00000379516 TOPBP1Q92547 1522 aa23.6■■□□□ 1.37
SNX2-201ENST00000379516 ERICH3Q5RHP9 1530 aa23.59■■□□□ 1.37
SNX2-201ENST00000379516 PPARGC1BQ86YN6 1023 aaKnown RBP23.59■■□□□ 1.37
SNX2-201ENST00000379516 CLIP1P30622 1438 aa23.55■■□□□ 1.36
SNX2-201ENST00000379516 POLA1P09884 1462 aaPredicted RBP23.53■■□□□ 1.36
SNX2-201ENST00000379516 IGF1RP08069 1367 aa23.52■■□□□ 1.36
SNX2-201ENST00000379516 URB2Q14146 1524 aaKnown RBP23.51■■□□□ 1.35
SNX2-201ENST00000379516 RAD54L2Q9Y4B4 1467 aa23.5■■□□□ 1.35
SNX2-201ENST00000379516 RANGAP1P46060 587 aaPredicted RBP23.49■■□□□ 1.35
SNX2-201ENST00000379516 HRCP23327 699 aa23.47■■□□□ 1.35
SNX2-201ENST00000379516 KIF21AQ7Z4S6 1674 aa23.45■■□□□ 1.34
SNX2-201ENST00000379516 ABCA10Q8WWZ4 1543 aa23.45■■□□□ 1.34
SNX2-201ENST00000379516 CARMIL1Q5VZK9 1371 aa23.41■■□□□ 1.34
SNX2-201ENST00000379516 VPS8Q8N3P4 1428 aa23.37■■□□□ 1.33
SNX2-201ENST00000379516 TTBK1Q5TCY1 1321 aaPredicted RBP23.36■■□□□ 1.33
SNX2-201ENST00000379516 WDR97A6NE52 1622 aa23.28■■□□□ 1.32
SNX2-201ENST00000379516 TDRD9Q8NDG6 1382 aaKnown RBP23.27■■□□□ 1.32
SNX2-201ENST00000379516 MRC2Q9UBG0 1479 aa23.27■■□□□ 1.32
SNX2-201ENST00000379516 ARAP1Q96P48 1450 aa23.25■■□□□ 1.31
SNX2-201ENST00000379516 APLP2Q06481 763 aa23.24■■□□□ 1.31
SNX2-201ENST00000379516 GAPVD1Q14C86 1478 aa23.2■■□□□ 1.31
SNX2-201ENST00000379516 CUL7Q14999 1698 aa23.2■■□□□ 1.3
SNX2-201ENST00000379516 ABCA5Q8WWZ7 1642 aa23.2■■□□□ 1.3
SNX2-201ENST00000379516 ARHGAP35Q9NRY4 1499 aa23.19■■□□□ 1.3
SNX2-201ENST00000379516 TARBP1Q13395 1621 aaKnown RBP23.18■■□□□ 1.3
SNX2-201ENST00000379516 ERCC6Q03468 1493 aa23.13■■□□□ 1.29
SNX2-201ENST00000379516 WDR62O43379 1518 aa23.1■■□□□ 1.29
SNX2-201ENST00000379516 AQRO60306 1485 aaKnown RBP eCLIP23.05■■□□□ 1.286e-6■■■■□ 25.1
SNX2-201ENST00000379516 IFT140Q96RY7 1462 aa23.04■■□□□ 1.28
SNX2-201ENST00000379516 P3H3Q8IVL6 736 aa22.99■■□□□ 1.27
SNX2-201ENST00000379516 CTTNBP2Q8WZ74 1663 aa22.99■■□□□ 1.27
SNX2-201ENST00000379516 PBRM1Q86U86 1689 aa22.98■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 146 ms