Protein–RNA interactions for Protein: O75533

SF3B1, Splicing factor 3B subunit 1, humanhuman

Known RBP eCLIP

Length 1,304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1O75533 MDM2-226ENST00000540352 1315 ntTSL 1 (best)4.77□□□□□ -1.656e-7■■■■■ 32.6
SF3B1O75533 MDM2-228ENST00000542502 1127 ntTSL 1 (best)4.67□□□□□ -1.666e-7■■■■■ 32.6
SF3B1O75533 MDM2-203ENST00000299252 966 ntTSL 1 (best) BASIC3.81□□□□□ -1.86e-7■■■■■ 32.6
SF3B1O75533 MDM2-218ENST00000481186 1056 ntTSL 53.73□□□□□ -1.816e-7■■■■■ 32.6
SF3B1O75533 MDM2-220ENST00000496959 897 ntTSL 1 (best)3.73□□□□□ -1.816e-7■■■■■ 32.6
SF3B1O75533 MDM2-223ENST00000536089 1181 ntTSL 1 (best)3.73□□□□□ -1.816e-7■■■■■ 32.6
SF3B1O75533 MDM2-217ENST00000478070 692 ntTSL 1 (best) BASIC3.06□□□□□ -1.926e-7■■■■■ 32.6
SF3B1O75533 MDM2-205ENST00000348801 798 ntTSL 1 (best) BASIC2.84□□□□□ -1.966e-7■■■■■ 32.6
SF3B1O75533 MDM2-207ENST00000360430 891 ntTSL 1 (best) BASIC2.2□□□□□ -2.066e-7■■■■■ 32.6
SF3B1O75533 MDM2-208ENST00000393410 732 ntTSL 1 (best) BASIC2.2□□□□□ -2.066e-7■■■■■ 32.6
SF3B1O75533 MDM2-210ENST00000393413 657 ntTSL 1 (best) BASIC2.2□□□□□ -2.066e-7■■■■■ 32.6
SF3B1O75533 MDM2-206ENST00000350057 1401 ntTSL 1 (best) BASIC1.93□□□□□ -2.16e-7■■■■■ 32.6
SF3B1O75533 MDM2-221ENST00000517852 393 ntTSL 1 (best) BASIC1.84□□□□□ -2.126e-7■■■■■ 32.6
SF3B1O75533 MDM2-233ENST00000545204 398 ntTSL 5 BASIC1.65□□□□□ -2.156e-7■■■■■ 32.6
SF3B1O75533 MDM2-232ENST00000544561 213 ntTSL 5 BASIC1.4□□□□□ -2.196e-7■■■■■ 32.6
SF3B1O75533 NUSAP1-204ENST00000557840 416 ntTSL 312.48□□□□□ -0.411e-7■■■■■ 32.6
SF3B1O75533 ELF1-202ENST00000405737 903 ntTSL 218.54■□□□□ 0.562e-6■■■■■ 32.6
SF3B1O75533 CUL4B-201ENST00000336592 3109 ntTSL 5 BASIC8.37□□□□□ -1.073e-6■■■■■ 32.6
SF3B1O75533 CUL4B-204ENST00000404115 3264 ntTSL 1 (best) BASIC6.51□□□□□ -1.373e-6■■■■■ 32.6
SF3B1O75533 CUL4B-202ENST00000371322 4902 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.763e-6■■■■■ 32.6
SF3B1O75533 ZFPM2-205ENST00000520027 594 ntTSL 46.5□□□□□ -1.373e-6■■■■■ 32.5
SF3B1O75533 ZFPM2-210ENST00000524235 574 ntTSL 44.32□□□□□ -1.723e-6■■■■■ 32.5
SF3B1O75533 ZNF692-227ENST00000533927 2026 ntTSL 1 (best)18.79■□□□□ 0.61e-6■■■■■ 32.4
SF3B1O75533 HBS1L-204ENST00000367826 2703 ntTSL 2 BASIC10.52□□□□□ -0.731e-6■■■■■ 32.4
SF3B1O75533 HBS1L-205ENST00000367837 7163 ntAPPRIS P1 TSL 1 (best) BASIC8.54□□□□□ -1.041e-6■■■■■ 32.4
SF3B1O75533 HBS1L-212ENST00000527578 2618 ntTSL 1 (best) BASIC7.23□□□□□ -1.251e-6■■■■■ 32.4
SF3B1O75533 HBS1L-216ENST00000533274 2102 ntTSL 27.22□□□□□ -1.251e-6■■■■■ 32.4
SF3B1O75533 HBS1L-206ENST00000415177 2636 ntTSL 5 BASIC7.09□□□□□ -1.281e-6■■■■■ 32.4
SF3B1O75533 HBS1L-209ENST00000526100 1600 ntTSL 25.29□□□□□ -1.561e-6■■■■■ 32.4
SF3B1O75533 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC18.71■□□□□ 0.593e-6■■■■■ 32.4
SF3B1O75533 GPCPD1-201ENST00000379019 5489 ntAPPRIS P1 TSL 1 (best) BASIC7.55□□□□□ -1.23e-6■■■■■ 32.4
SF3B1O75533 DDX5-235ENST00000630471 473 ntTSL 4 BASIC15.64■□□□□ 0.095e-7■■■■■ 32.4
SF3B1O75533 EIF4A2-218ENST00000475653 909 ntTSL 26.95□□□□□ -1.35e-7■■■■■ 32.4
SF3B1O75533 PNPT1-204ENST00000429805 583 ntTSL 313.35□□□□□ -0.274e-8■■■■■ 32.3
SF3B1O75533 PNPT1-205ENST00000447944 4411 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.764e-8■■■■■ 32.3
SF3B1O75533 PNPT1-201ENST00000260604 3596 ntTSL 58.88□□□□□ -0.994e-8■■■■■ 32.3
SF3B1O75533 PNPT1-202ENST00000415374 3308 ntTSL 58.56□□□□□ -1.044e-8■■■■■ 32.3
SF3B1O75533 GYPE-202ENST00000437468 499 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.591e-9■■■■■ 32.3
SF3B1O75533 GYPE-201ENST00000358615 1684 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.821e-9■■■■■ 32.3
SF3B1O75533 GYPE-203ENST00000506264 1624 ntTSL 53.4□□□□□ -1.871e-9■■■■■ 32.3
SF3B1O75533 INTS6L-203ENST00000481908 3528 ntTSL 213.28□□□□□ -0.284e-6■■■■■ 32.3
SF3B1O75533 INTS6L-201ENST00000370752 3793 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.344e-6■■■■■ 32.3
SF3B1O75533 INTS6L-206ENST00000639893 3904 ntTSL 5 BASIC12.09□□□□□ -0.474e-6■■■■■ 32.3
SF3B1O75533 ACSL3-204ENST00000413316 650 ntTSL 410.88□□□□□ -0.674e-6■■■■■ 32.3
SF3B1O75533 INTS6L-204ENST00000493637 6710 ntTSL 1 (best)3.92□□□□□ -1.784e-6■■■■■ 32.3
SF3B1O75533 RSRC2-214ENST00000527796 3156 ntTSL 510.05□□□□□ -0.83e-6■■■■■ 32.3
SF3B1O75533 IGF2BP3-203ENST00000465058 534 ntTSL 417.26■□□□□ 0.352e-6■■■■■ 32.3
SF3B1O75533 IGF2BP3-211ENST00000479504 559 ntTSL 417.26■□□□□ 0.352e-6■■■■■ 32.3
SF3B1O75533 IGF2BP3-204ENST00000466809 588 ntTSL 516.16■□□□□ 0.182e-6■■■■■ 32.3
SF3B1O75533 IGF2BP3-208ENST00000469723 556 ntTSL 58.93□□□□□ -0.982e-6■■■■■ 32.3
SF3B1O75533 BLVRB-203ENST00000597870 1392 ntTSL 520.18■□□□□ 0.822e-6■■■■■ 32.3
SF3B1O75533 BLVRB-201ENST00000263368 873 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.282e-6■■■■■ 32.3
SF3B1O75533 BLVRB-202ENST00000595483 649 ntTSL 2 BASIC14.27□□□□□ -0.122e-6■■■■■ 32.3
SF3B1O75533 FTH1-204ENST00000529548 567 ntTSL 311.07□□□□□ -0.647e-7■■■■■ 32.2
SF3B1O75533 CSNK1A1-202ENST00000377843 2559 ntAPPRIS ALT1 TSL 1 (best) BASIC16.34■□□□□ 0.215e-6■■■■■ 32.2
SF3B1O75533 CSNK1A1-201ENST00000261798 6067 ntAPPRIS ALT1 TSL 1 (best) BASIC10.91□□□□□ -0.665e-6■■■■■ 32.2
SF3B1O75533 CSNK1A1-204ENST00000504676 1772 ntTSL 2 BASIC7.24□□□□□ -1.255e-6■■■■■ 32.2
SF3B1O75533 CSNK1A1-207ENST00000515768 1098 ntAPPRIS P4 TSL 5 BASIC7.08□□□□□ -1.285e-6■■■■■ 32.2
SF3B1O75533 CSNK1A1-205ENST00000515435 1856 ntTSL 5 BASIC7.01□□□□□ -1.295e-6■■■■■ 32.2
SF3B1O75533 HSPA9-204ENST00000504902 887 ntTSL 516.34■□□□□ 0.219e-8■■■■■ 32.2
SF3B1O75533 HSPA9-205ENST00000505110 518 ntTSL 416.12■□□□□ 0.179e-8■■■■■ 32.2
SF3B1O75533 HSPA9-208ENST00000507115 663 ntTSL 310.34□□□□□ -0.759e-8■■■■■ 32.2
SF3B1O75533 HSPA9-203ENST00000504810 584 ntTSL 36.71□□□□□ -1.349e-8■■■■■ 32.2
SF3B1O75533 EWSR1-205ENST00000360091 1289 ntTSL 521.53■■□□□ 1.042e-6■■■■■ 32.2
SF3B1O75533 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC19.8■□□□□ 0.762e-6■■■■■ 32.2
SF3B1O75533 EWSR1-218ENST00000483629 1818 ntTSL 518.94■□□□□ 0.622e-6■■■■■ 32.2
SF3B1O75533 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.622e-6■■■■■ 32.2
SF3B1O75533 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC18.36■□□□□ 0.532e-6■■■■■ 32.2
SF3B1O75533 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.472e-6■■■■■ 32.2
SF3B1O75533 EWSR1-222ENST00000629659 2446 ntTSL 5 BASIC17.72■□□□□ 0.432e-6■■■■■ 32.2
SF3B1O75533 EWSR1-221ENST00000610553 2300 ntTSL 217.55■□□□□ 0.42e-6■■■■■ 32.2
SF3B1O75533 EWSR1-203ENST00000332050 2552 ntTSL 1 (best) BASIC17.46■□□□□ 0.392e-6■■■■■ 32.2
SF3B1O75533 EWSR1-215ENST00000469669 2630 ntTSL 217.35■□□□□ 0.372e-6■■■■■ 32.2
SF3B1O75533 EWSR1-201ENST00000331029 2267 ntTSL 5 BASIC16.94■□□□□ 0.32e-6■■■■■ 32.2
SF3B1O75533 URI1-211ENST00000575242 1032 ntTSL 212.46□□□□□ -0.411e-6■■■■■ 32.2
SF3B1O75533 EWSR1-216ENST00000479135 7285 ntTSL 1 (best)11.26□□□□□ -0.612e-6■■■■■ 32.2
SF3B1O75533 GABRE-208ENST00000483564 2747 ntTSL 39.53□□□□□ -0.881e-6■■■■■ 32.2
SF3B1O75533 ALDOA-220ENST00000566846 512 ntTSL 212.71□□□□□ -0.376e-8■■■■■ 32.2
SF3B1O75533 CEP192-214ENST00000589596 3793 ntAPPRIS ALT2 TSL 27.19□□□□□ -1.262e-6■■■■■ 32.1
SF3B1O75533 RANBP1-214ENST00000488484 699 ntTSL 216.53■□□□□ 0.243e-6■■■■■ 32.1
SF3B1O75533 ARFGAP1-209ENST00000518794 2727 ntTSL 1 (best)18.49■□□□□ 0.553e-7■■■■■ 32.1
SF3B1O75533 SEPT2-244ENST00000495463 501 ntTSL 430.66■■■□□ 2.59e-7■■■■■ 32.1
SF3B1O75533 SEPT2-234ENST00000475474 749 ntTSL 228.39■■■□□ 2.139e-7■■■■■ 32.1
SF3B1O75533 SEPT2-238ENST00000482304 740 ntTSL 227.44■■□□□ 1.989e-7■■■■■ 32.1
SF3B1O75533 SEPT2-227ENST00000462147 576 ntTSL 427.01■■□□□ 1.919e-7■■■■■ 32.1
SF3B1O75533 SEPT2-229ENST00000466211 584 ntTSL 325.59■■□□□ 1.699e-7■■■■■ 32.1
SF3B1O75533 SEPT2-216ENST00000434955 480 ntTSL 325.45■■□□□ 1.669e-7■■■■■ 32.1
SF3B1O75533 SEPT2-205ENST00000401990 1734 ntTSL 1 (best) BASIC24.89■■□□□ 1.579e-7■■■■■ 32.1
SF3B1O75533 SEPT2-217ENST00000436795 775 ntTSL 524.58■■□□□ 1.529e-7■■■■■ 32.1
SF3B1O75533 SEPT2-209ENST00000411484 561 ntTSL 424.48■■□□□ 1.519e-7■■■■■ 32.1
SF3B1O75533 SEPT2-243ENST00000494824 565 ntTSL 523.94■■□□□ 1.429e-7■■■■■ 32.1
SF3B1O75533 SEPT2-231ENST00000469175 486 ntTSL 323.7■■□□□ 1.389e-7■■■■■ 32.1
SF3B1O75533 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.359e-7■■■■■ 32.1
SF3B1O75533 SPRED1-202ENST00000561205 1177 ntTSL 523.32■■□□□ 1.329e-7■■■■■ 32.1
SF3B1O75533 PKMYT1-205ENST00000570649 612 ntTSL 222.79■■□□□ 1.249e-7■■■■■ 32.1
SF3B1O75533 YBX1-202ENST00000332220 776 ntTSL 522.66■■□□□ 1.229e-7■■■■■ 32.1
SF3B1O75533 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC22.19■■□□□ 1.149e-7■■■■■ 32.1
SF3B1O75533 SEPT2-210ENST00000420786 539 ntTSL 521.62■■□□□ 1.059e-7■■■■■ 32.1
SF3B1O75533 HDAC7-220ENST00000471235 1012 ntTSL 221.45■■□□□ 1.029e-7■■■■■ 32.1
SF3B1O75533 PHPT1-205ENST00000492540 1316 ntTSL 1 (best)21.34■■□□□ 1.019e-7■■■■■ 32.1
Retrieved 100 of 46,956 protein–RNA pairs in 3547.5 ms