RNA–Protein interactions for RNA: ENST00000379019.5

GPCPD1-201, Transcript of glycerophosphocholine phosphodiesterase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene GPCPD1, Length 5,489 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPCPD1-201ENST00000379019 NISCHQ9Y2I1 1504 aa16.43■□□□□ 0.22
GPCPD1-201ENST00000379019 CCDC180Q9P1Z9 1646 aa14.87□□□□□ -0.03
GPCPD1-201ENST00000379019 ABCC9O60706 1549 aa14.07□□□□□ -0.16
GPCPD1-201ENST00000379019 MYO15BQ96JP2 1530 aa14□□□□□ -0.17
GPCPD1-201ENST00000379019 NACADO15069 1562 aa13.93□□□□□ -0.18
GPCPD1-201ENST00000379019 RB1CC1Q8TDY2 1594 aa13.9□□□□□ -0.18
GPCPD1-201ENST00000379019 DCAF1Q9Y4B6 1507 aa13.86□□□□□ -0.19
GPCPD1-201ENST00000379019 ZCCHC6Q5VYS8 1495 aaKnown RBP13.71□□□□□ -0.21
GPCPD1-201ENST00000379019 SHROOM4Q9ULL8 1493 aa13.64□□□□□ -0.23
GPCPD1-201ENST00000379019 UNC13AQ9UPW8 1703 aa13.38□□□□□ -0.27
GPCPD1-201ENST00000379019 BICRAQ9NZM4 1560 aa13.29□□□□□ -0.28
GPCPD1-201ENST00000379019 DCAF8L2P0C7V8 631 aa13.24□□□□□ -0.29
GPCPD1-201ENST00000379019 SCRIBQ14160 1630 aa13.16□□□□□ -0.3
GPCPD1-201ENST00000379019 PPARGC1BQ86YN6 1023 aaKnown RBP13.01□□□□□ -0.33
GPCPD1-201ENST00000379019 PABPN1Q86U42 306 aaKnown RBP eCLIP12.99□□□□□ -0.33
GPCPD1-201ENST00000379019 EIF4G1Q04637 1599 aaKnown RBP12.98□□□□□ -0.33
GPCPD1-201ENST00000379019 CC2D2AQ9P2K1 1620 aa12.89□□□□□ -0.35
GPCPD1-201ENST00000379019 SUPT5HO00267 1087 aaKnown RBP12.86□□□□□ -0.35
GPCPD1-201ENST00000379019 BAZ1AQ9NRL2 1556 aaPredicted RBP12.82□□□□□ -0.36
GPCPD1-201ENST00000379019 SMARCA2P51531 1590 aa12.81□□□□□ -0.36
GPCPD1-201ENST00000379019 CECR2Q9BXF3 1484 aa12.8□□□□□ -0.36
GPCPD1-201ENST00000379019 PEG3Q9GZU2 1588 aa12.79□□□□□ -0.36
GPCPD1-201ENST00000379019 HMGXB3Q12766 1538 aa12.78□□□□□ -0.36
GPCPD1-201ENST00000379019 NCAPD3P42695 1498 aa12.76□□□□□ -0.37
GPCPD1-201ENST00000379019 SMARCA4P51532 1647 aa12.76□□□□□ -0.37
GPCPD1-201ENST00000379019 DNAJC5BQ9UF47 199 aa12.74□□□□□ -0.37
GPCPD1-201ENST00000379019 HRCP23327 699 aa12.67□□□□□ -0.38
GPCPD1-201ENST00000379019 ATAD2BQ9ULI0 1458 aa12.66□□□□□ -0.38
GPCPD1-201ENST00000379019 PCGF6Q9BYE7 350 aa12.64□□□□□ -0.39
GPCPD1-201ENST00000379019 CHIC1Q5VXU3 224 aa12.59□□□□□ -0.39
GPCPD1-201ENST00000379019 LOC105371045A0A1W2PR82 267 aa12.59□□□□□ -0.39
GPCPD1-201ENST00000379019 BAZ1BQ9UIG0 1483 aaKnown RBP12.57□□□□□ -0.4
GPCPD1-201ENST00000379019 MROH2BQ7Z745 1585 aa12.5□□□□□ -0.41
GPCPD1-201ENST00000379019 LAMC3Q9Y6N6 1575 aa12.49□□□□□ -0.41
GPCPD1-201ENST00000379019 TOP2AP11388 1531 aaKnown RBP12.45□□□□□ -0.42
GPCPD1-201ENST00000379019 CUX2O14529 1486 aa12.41□□□□□ -0.42
GPCPD1-201ENST00000379019 RSF1Q96T23 1441 aaPredicted RBP12.39□□□□□ -0.43
GPCPD1-201ENST00000379019 PDS5BQ9NTI5 1447 aa12.35□□□□□ -0.43
GPCPD1-201ENST00000379019 WIZO95785 1651 aa12.34□□□□□ -0.43
GPCPD1-201ENST00000379019 PRDM2Q13029 1718 aa12.32□□□□□ -0.44
GPCPD1-201ENST00000379019 CADPSQ9ULU8 1353 aa12.3□□□□□ -0.44
GPCPD1-201ENST00000379019 ERCC6Q03468 1493 aa12.28□□□□□ -0.44
GPCPD1-201ENST00000379019 CFTRP13569 1480 aa12.26□□□□□ -0.45
GPCPD1-201ENST00000379019 SCAF1Q9H7N4 1312 aaKnown RBP12.24□□□□□ -0.45
GPCPD1-201ENST00000379019 THOC2Q8NI27 1593 aaKnown RBP12.22□□□□□ -0.45
GPCPD1-201ENST00000379019 MRC2Q9UBG0 1479 aa12.2□□□□□ -0.46
GPCPD1-201ENST00000379019 ABCC8Q09428 1581 aa12.2□□□□□ -0.46
GPCPD1-201ENST00000379019 WDR62O43379 1518 aa12.19□□□□□ -0.46
GPCPD1-201ENST00000379019 EHMT2Q96KQ7 1210 aa12.18□□□□□ -0.46
GPCPD1-201ENST00000379019 CEP164Q9UPV0 1460 aa12.17□□□□□ -0.46
GPCPD1-201ENST00000379019 KIF21AQ7Z4S6 1674 aa12.15□□□□□ -0.47
GPCPD1-201ENST00000379019 CCDC88BA6NC98 1476 aa12.13□□□□□ -0.47
GPCPD1-201ENST00000379019 FANCD2Q9BXW9 1451 aa12.12□□□□□ -0.47
GPCPD1-201ENST00000379019 NESP48681 1621 aa12.12□□□□□ -0.47
GPCPD1-201ENST00000379019 WDR97A6NE52 1622 aa12.11□□□□□ -0.47
GPCPD1-201ENST00000379019 DNMBPQ6XZF7 1577 aa12.03□□□□□ -0.48
GPCPD1-201ENST00000379019 IFT140Q96RY7 1462 aa12□□□□□ -0.49
GPCPD1-201ENST00000379019 FAM9AQ8IZU1 332 aaPredicted RBP11.97□□□□□ -0.49
GPCPD1-201ENST00000379019 URB2Q14146 1524 aaKnown RBP11.95□□□□□ -0.5
GPCPD1-201ENST00000379019 TOPBP1Q92547 1522 aa11.94□□□□□ -0.5
GPCPD1-201ENST00000379019 TRIM26Q12899 539 aaPredicted RBP11.89□□□□□ -0.51
GPCPD1-201ENST00000379019 NEUROD1Q13562 356 aa11.89□□□□□ -0.51
GPCPD1-201ENST00000379019 BIVM-ERCC5R4GMW8 1640 aa11.85□□□□□ -0.51
GPCPD1-201ENST00000379019 TARBP1Q13395 1621 aaKnown RBP11.84□□□□□ -0.51
GPCPD1-201ENST00000379019 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.83□□□□□ -0.52
GPCPD1-201ENST00000379019 TOP2BQ02880 1626 aa11.8□□□□□ -0.52
GPCPD1-201ENST00000379019 POLA1P09884 1462 aaPredicted RBP11.79□□□□□ -0.52
GPCPD1-201ENST00000379019 CUX1P39880 1505 aa11.78□□□□□ -0.52
GPCPD1-201ENST00000379019 DNAJC5Q9H3Z4 198 aa11.78□□□□□ -0.52
GPCPD1-201ENST00000379019 TTBK1Q5TCY1 1321 aaPredicted RBP11.78□□□□□ -0.52
GPCPD1-201ENST00000379019 ABCA10Q8WWZ4 1543 aa11.77□□□□□ -0.53
GPCPD1-201ENST00000379019 EIF4G3O43432 1585 aaKnown RBP11.77□□□□□ -0.53
GPCPD1-201ENST00000379019 MAGI1Q96QZ7 1491 aaPredicted RBP11.77□□□□□ -0.53
GPCPD1-201ENST00000379019 FGD5Q6ZNL6 1462 aa11.75□□□□□ -0.53
GPCPD1-201ENST00000379019 SOGA1O94964 1423 aa11.75□□□□□ -0.53
GPCPD1-201ENST00000379019 WRNQ14191 1432 aaPredicted RBP eCLIP11.74□□□□□ -0.53
GPCPD1-201ENST00000379019 GRIN2BQ13224 1484 aa11.73□□□□□ -0.53
GPCPD1-201ENST00000379019 ABCA5Q8WWZ7 1642 aa11.72□□□□□ -0.53
GPCPD1-201ENST00000379019 ERICH3Q5RHP9 1530 aa11.69□□□□□ -0.54
GPCPD1-201ENST00000379019 PBRM1Q86U86 1689 aa11.68□□□□□ -0.54
GPCPD1-201ENST00000379019 SYNJ1O43426 1573 aa11.66□□□□□ -0.54
GPCPD1-201ENST00000379019 SYNJ2O15056 1496 aa11.65□□□□□ -0.54
GPCPD1-201ENST00000379019 GAPVD1Q14C86 1478 aa11.65□□□□□ -0.54
GPCPD1-201ENST00000379019 OSCARQ8IYS5 282 aa11.65□□□□□ -0.55
GPCPD1-201ENST00000379019 ZNF608Q9ULD9 1512 aaPredicted RBP11.64□□□□□ -0.55
GPCPD1-201ENST00000379019 GTF3C3Q9Y5Q9 886 aa11.63□□□□□ -0.55
GPCPD1-201ENST00000379019 CUL7Q14999 1698 aa11.62□□□□□ -0.55
GPCPD1-201ENST00000379019 TRIM41Q8WV44 630 aa11.61□□□□□ -0.55
GPCPD1-201ENST00000379019 ADAMTS12P58397 1594 aa11.6□□□□□ -0.55
GPCPD1-201ENST00000379019 RAD54L2Q9Y4B4 1467 aa11.6□□□□□ -0.55
GPCPD1-201ENST00000379019 FHAD1B1AJZ9 1412 aa11.6□□□□□ -0.55
GPCPD1-201ENST00000379019 CHD1O14646 1710 aa11.59□□□□□ -0.55
GPCPD1-201ENST00000379019 SNAPC4Q5SXM2 1469 aa11.59□□□□□ -0.55
GPCPD1-201ENST00000379019 ACIN1Q9UKV3 1341 aaKnown RBP11.59□□□□□ -0.55
GPCPD1-201ENST00000379019 CLASP1Q7Z460 1538 aa11.59□□□□□ -0.55
GPCPD1-201ENST00000379019 AQRO60306 1485 aaKnown RBP eCLIP11.57□□□□□ -0.563e-7■■■■□ 23
GPCPD1-201ENST00000379019 KIF27Q86VH2 1401 aa11.56□□□□□ -0.56
GPCPD1-201ENST00000379019 RUSC2Q8N2Y8 1516 aa11.55□□□□□ -0.56
GPCPD1-201ENST00000379019 NUP160Q12769 1436 aa11.53□□□□□ -0.56
GPCPD1-201ENST00000379019 GRIN2AQ12879 1464 aa11.52□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms