RNA–Protein interactions for RNA: ENST00000377843.6

CSNK1A1-202, Transcript of casein kinase 1 alpha 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene CSNK1A1, Length 2,559 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSNK1A1-202ENST00000377843 NISCHQ9Y2I1 1504 aa30.16■■■□□ 2.42
CSNK1A1-202ENST00000377843 HRCP23327 699 aa26.73■■□□□ 1.87
CSNK1A1-202ENST00000377843 PPARGC1BQ86YN6 1023 aaKnown RBP26.27■■□□□ 1.8
CSNK1A1-202ENST00000377843 SHROOM4Q9ULL8 1493 aa26.16■■□□□ 1.78
CSNK1A1-202ENST00000377843 PCGF6Q9BYE7 350 aa26.1■■□□□ 1.77
CSNK1A1-202ENST00000377843 SUPT5HO00267 1087 aaKnown RBP26.08■■□□□ 1.77
CSNK1A1-202ENST00000377843 MYO15BQ96JP2 1530 aa26.06■■□□□ 1.76
CSNK1A1-202ENST00000377843 CCDC180Q9P1Z9 1646 aa25.86■■□□□ 1.73
CSNK1A1-202ENST00000377843 PELP1Q8IZL8 1130 aaKnown RBP25.8■■□□□ 1.72
CSNK1A1-202ENST00000377843 CHIC1Q5VXU3 224 aa25.76■■□□□ 1.71
CSNK1A1-202ENST00000377843 DCAF8L2P0C7V8 631 aa25.58■■□□□ 1.69
CSNK1A1-202ENST00000377843 SCAF1Q9H7N4 1312 aaKnown RBP25.42■■□□□ 1.66
CSNK1A1-202ENST00000377843 DCAF1Q9Y4B6 1507 aa25.41■■□□□ 1.66
CSNK1A1-202ENST00000377843 ZCCHC6Q5VYS8 1495 aaKnown RBP25.32■■□□□ 1.64
CSNK1A1-202ENST00000377843 LOC105371045A0A1W2PR82 267 aa25.21■■□□□ 1.63
CSNK1A1-202ENST00000377843 TRIM26Q12899 539 aaPredicted RBP25.17■■□□□ 1.62
CSNK1A1-202ENST00000377843 ABCC9O60706 1549 aa24.98■■□□□ 1.59
CSNK1A1-202ENST00000377843 ZEB1P37275 1124 aaPredicted RBP24.93■■□□□ 1.58
CSNK1A1-202ENST00000377843 MYT1Q01538 1121 aa24.76■■□□□ 1.55
CSNK1A1-202ENST00000377843 ACIN1Q9UKV3 1341 aaKnown RBP24.68■■□□□ 1.54
CSNK1A1-202ENST00000377843 NEUROD1Q13562 356 aa24.66■■□□□ 1.54
CSNK1A1-202ENST00000377843 GTF3C3Q9Y5Q9 886 aa24.49■■□□□ 1.51
CSNK1A1-202ENST00000377843 SCRIBQ14160 1630 aa24.34■■□□□ 1.49
CSNK1A1-202ENST00000377843 CENPBP07199 599 aaPredicted RBP24.21■■□□□ 1.47
CSNK1A1-202ENST00000377843 NACADO15069 1562 aa24.17■■□□□ 1.46
CSNK1A1-202ENST00000377843 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP24.16■■□□□ 1.46
CSNK1A1-202ENST00000377843 DIEXFQ68CQ4 756 aaKnown RBP24.16■■□□□ 1.46
CSNK1A1-202ENST00000377843 FAM9AQ8IZU1 332 aaPredicted RBP24.13■■□□□ 1.45
CSNK1A1-202ENST00000377843 EHMT2Q96KQ7 1210 aa24.06■■□□□ 1.44
CSNK1A1-202ENST00000377843 TRIM41Q8WV44 630 aa24.05■■□□□ 1.44
CSNK1A1-202ENST00000377843 CCER1Q8TC90 406 aaPredicted RBP24.04■■□□□ 1.44
CSNK1A1-202ENST00000377843 RB1CC1Q8TDY2 1594 aa23.99■■□□□ 1.43
CSNK1A1-202ENST00000377843 PABPN1Q86U42 306 aaKnown RBP eCLIP23.82■■□□□ 1.4
CSNK1A1-202ENST00000377843 YTHDC1Q96MU7 727 aaKnown RBP23.81■■□□□ 1.4
CSNK1A1-202ENST00000377843 RSF1Q96T23 1441 aaPredicted RBP23.72■■□□□ 1.39
CSNK1A1-202ENST00000377843 CECR2Q9BXF3 1484 aa23.71■■□□□ 1.39
CSNK1A1-202ENST00000377843 ZNF316A6NFI3 1004 aaPredicted RBP23.65■■□□□ 1.38
CSNK1A1-202ENST00000377843 UNC13AQ9UPW8 1703 aa23.6■■□□□ 1.37
CSNK1A1-202ENST00000377843 MIER1Q8N108 512 aa23.59■■□□□ 1.37
CSNK1A1-202ENST00000377843 TTBK1Q5TCY1 1321 aaPredicted RBP23.52■■□□□ 1.36
CSNK1A1-202ENST00000377843 MROH2BQ7Z745 1585 aa23.48■■□□□ 1.35
CSNK1A1-202ENST00000377843 BICRAQ9NZM4 1560 aa23.41■■□□□ 1.34
CSNK1A1-202ENST00000377843 BCL11AQ9H165 835 aa23.39■■□□□ 1.34
CSNK1A1-202ENST00000377843 ANP32EQ9BTT0 268 aa23.31■■□□□ 1.32
CSNK1A1-202ENST00000377843 WRNQ14191 1432 aaPredicted RBP eCLIP23.3■■□□□ 1.32
CSNK1A1-202ENST00000377843 SUPT16HQ9Y5B9 1047 aaKnown RBP23.3■■□□□ 1.32
CSNK1A1-202ENST00000377843 WIZO95785 1651 aa23.3■■□□□ 1.32
CSNK1A1-202ENST00000377843 TSHZ2Q9NRE2 1034 aa23.26■■□□□ 1.31
CSNK1A1-202ENST00000377843 BAZ1AQ9NRL2 1556 aaPredicted RBP23.19■■□□□ 1.3
CSNK1A1-202ENST00000377843 CEP162Q5TB80 1403 aa23.15■■□□□ 1.3
CSNK1A1-202ENST00000377843 CSRNP3Q8WYN3 585 aa23.13■■□□□ 1.29
CSNK1A1-202ENST00000377843 SMARCA4P51532 1647 aa23.12■■□□□ 1.29
CSNK1A1-202ENST00000377843 CLSPNQ9HAW4 1339 aa23.07■■□□□ 1.28
CSNK1A1-202ENST00000377843 HNRNPUL2Q1KMD3 747 aaKnown RBP23.01■■□□□ 1.27
CSNK1A1-202ENST00000377843 EIF4G1Q04637 1599 aaKnown RBP22.97■■□□□ 1.27
CSNK1A1-202ENST00000377843 TNIKQ9UKE5 1360 aa22.95■■□□□ 1.26
CSNK1A1-202ENST00000377843 CCDC88BA6NC98 1476 aa22.92■■□□□ 1.26
CSNK1A1-202ENST00000377843 ABCC8Q09428 1581 aa22.88■■□□□ 1.25
CSNK1A1-202ENST00000377843 SOGA1O94964 1423 aa22.87■■□□□ 1.25
CSNK1A1-202ENST00000377843 TOP2AP11388 1531 aaKnown RBP22.83■■□□□ 1.24
CSNK1A1-202ENST00000377843 UBTFP17480 764 aaKnown RBP22.79■■□□□ 1.24
CSNK1A1-202ENST00000377843 ATAD2BQ9ULI0 1458 aa22.78■■□□□ 1.24
CSNK1A1-202ENST00000377843 BCANQ96GW7 911 aa22.78■■□□□ 1.24
CSNK1A1-202ENST00000377843 RUSC2Q8N2Y8 1516 aa22.75■■□□□ 1.23
CSNK1A1-202ENST00000377843 SMARCA2P51531 1590 aa22.72■■□□□ 1.23
CSNK1A1-202ENST00000377843 KCNH8Q96L42 1107 aa22.71■■□□□ 1.23
CSNK1A1-202ENST00000377843 BAZ1BQ9UIG0 1483 aaKnown RBP22.67■■□□□ 1.22
CSNK1A1-202ENST00000377843 RBM19Q9Y4C8 960 aaKnown RBP22.66■■□□□ 1.22
CSNK1A1-202ENST00000377843 PEG3Q9GZU2 1588 aa22.62■■□□□ 1.21
CSNK1A1-202ENST00000377843 FKBP8Q14318 412 aa22.61■■□□□ 1.21
CSNK1A1-202ENST00000377843 GOLGA3Q08378 1498 aa22.61■■□□□ 1.21
CSNK1A1-202ENST00000377843 DHX57Q6P158 1386 aaKnown RBP22.6■■□□□ 1.21
CSNK1A1-202ENST00000377843 EEA1Q15075 1411 aa22.57■■□□□ 1.2
CSNK1A1-202ENST00000377843 MSH5O43196 834 aa22.55■■□□□ 1.2
CSNK1A1-202ENST00000377843 CLIP1P30622 1438 aa22.51■■□□□ 1.19
CSNK1A1-202ENST00000377843 PRKCSHP14314 528 aaPredicted RBP22.49■■□□□ 1.19
CSNK1A1-202ENST00000377843 VPS8Q8N3P4 1428 aa22.47■■□□□ 1.19
CSNK1A1-202ENST00000377843 ITGAEP38570 1179 aa22.45■■□□□ 1.19
CSNK1A1-202ENST00000377843 NCAPD3P42695 1498 aa22.43■■□□□ 1.18
CSNK1A1-202ENST00000377843 APLP2Q06481 763 aa22.38■■□□□ 1.17
CSNK1A1-202ENST00000377843 CC2D2AQ9P2K1 1620 aa22.37■■□□□ 1.17
CSNK1A1-202ENST00000377843 CEP164Q9UPV0 1460 aa22.35■■□□□ 1.17
CSNK1A1-202ENST00000377843 DNAJC5BQ9UF47 199 aa22.34■■□□□ 1.17
CSNK1A1-202ENST00000377843 RANGAP1P46060 587 aaPredicted RBP22.3■■□□□ 1.16
CSNK1A1-202ENST00000377843 HMGXB3Q12766 1538 aa22.29■■□□□ 1.16
CSNK1A1-202ENST00000377843 NEFLP07196 543 aa22.29■■□□□ 1.16
CSNK1A1-202ENST00000377843 KIF21BO75037 1637 aa22.28■■□□□ 1.16
CSNK1A1-202ENST00000377843 DDX10Q13206 875 aaKnown RBP22.24■■□□□ 1.15
CSNK1A1-202ENST00000377843 TRIM52Q96A61 297 aa22.23■■□□□ 1.15
CSNK1A1-202ENST00000377843 FANCIQ9NVI1 1328 aa22.23■■□□□ 1.15
CSNK1A1-202ENST00000377843 RAPGEF2Q9Y4G8 1499 aa22.21■■□□□ 1.15
CSNK1A1-202ENST00000377843 KANK4Q5T7N3 995 aaPredicted RBP22.19■■□□□ 1.14
CSNK1A1-202ENST00000377843 PPP1R15AO75807 674 aaPredicted RBP22.13■■□□□ 1.13
CSNK1A1-202ENST00000377843 CUX2O14529 1486 aa22.12■■□□□ 1.13
CSNK1A1-202ENST00000377843 SYNJ1O43426 1573 aa22.12■■□□□ 1.13
CSNK1A1-202ENST00000377843 ERICH6Q7L0X2 663 aa22.11■■□□□ 1.13
CSNK1A1-202ENST00000377843 RRBP1Q9P2E9 1410 aaKnown RBP22.1■■□□□ 1.13
CSNK1A1-202ENST00000377843 MAPKBP1O60336 1514 aa22.09■■□□□ 1.13
CSNK1A1-202ENST00000377843 DEKP35659 375 aaKnown RBP22.09■■□□□ 1.13
CSNK1A1-202ENST00000377843 WDR97A6NE52 1622 aa22.04■■□□□ 1.12
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms