Protein–RNA interactions for Protein: O75940

SMNDC1, Survival of motor neuron-related-splicing factor 30, humanhuman

Known RBP eCLIP

Length 238 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMNDC1O75940 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.72e-6■■■■□ 19.3
SMNDC1O75940 UBE2J2-209ENST00000461142 837 ntTSL 319.37■□□□□ 0.692e-6■■■■□ 19.3
SMNDC1O75940 UBE2J2-214ENST00000473215 1028 ntTSL 319.18■□□□□ 0.662e-6■■■■□ 19.3
SMNDC1O75940 UBE2J2-206ENST00000422076 643 ntTSL 518.91■□□□□ 0.622e-6■■■■□ 19.3
SMNDC1O75940 UBE2J2-219ENST00000503294 814 ntTSL 418.91■□□□□ 0.622e-6■■■■□ 19.3
SMNDC1O75940 POLR2A-206ENST00000576553 602 ntTSL 218.68■□□□□ 0.583e-7■■■■□ 19.3
SMNDC1O75940 UBE2J2-220ENST00000509720 472 ntTSL 317.14■□□□□ 0.332e-6■■■■□ 19.3
SMNDC1O75940 UBE2J2-211ENST00000466752 886 ntTSL 316.94■□□□□ 0.32e-6■■■■□ 19.3
SMNDC1O75940 UBE2J2-217ENST00000491779 611 ntTSL 216.94■□□□□ 0.32e-6■■■■□ 19.3
SMNDC1O75940 UBE2J2-216ENST00000488418 750 ntTSL 216.86■□□□□ 0.292e-6■■■■□ 19.3
SMNDC1O75940 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC16.14■□□□□ 0.172e-6■■■■□ 19.3
SMNDC1O75940 TRAF7-202ENST00000564067 874 ntTSL 316.09■□□□□ 0.173e-6■■■■□ 19.3
SMNDC1O75940 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC16.09■□□□□ 0.173e-6■■■■□ 19.3
SMNDC1O75940 TRAF7-201ENST00000326181 3700 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.143e-6■■■■□ 19.3
SMNDC1O75940 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC15.51■□□□□ 0.072e-6■■■■□ 19.3
SMNDC1O75940 UBE2J2-218ENST00000502382 530 ntTSL 414.47□□□□□ -0.092e-6■■■■□ 19.3
SMNDC1O75940 UBE2J2-215ENST00000477894 767 ntTSL 514.24□□□□□ -0.132e-6■■■■□ 19.3
SMNDC1O75940 POLR2A-209ENST00000617998 6751 ntTSL 1 (best)10.74□□□□□ -0.693e-7■■■■□ 19.3
SMNDC1O75940 SSBP4-208ENST00000600628 550 ntTSL 37.79□□□□□ -1.161e-6■■■■□ 19.3
SMNDC1O75940 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.511e-6■■■■□ 19.3
SMNDC1O75940 SEPT9-215ENST00000586521 601 ntTSL 415.47■□□□□ 0.072e-6■■■■□ 19.3
SMNDC1O75940 PTMA-206ENST00000412128 863 ntTSL 322.07■■□□□ 1.121e-6■■■■□ 19.3
SMNDC1O75940 PTMA-207ENST00000440384 222 ntTSL 317.16■□□□□ 0.341e-6■■■■□ 19.3
SMNDC1O75940 PTPN1-202ENST00000541713 3469 ntTSL 2 BASIC13.85□□□□□ -0.194e-8■■■■□ 19.3
SMNDC1O75940 PTPN1-201ENST00000371621 4008 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.384e-8■■■■□ 19.3
SMNDC1O75940 RBM3-206ENST00000485213 947 ntTSL 216.57■□□□□ 0.242e-23■■■□□ 19.2
SMNDC1O75940 RBM3-204ENST00000466764 1375 ntTSL 314.98□□□□□ -0.012e-23■■■□□ 19.2
SMNDC1O75940 RBM3-202ENST00000376755 1130 ntAPPRIS P1 TSL 2 BASIC14.32□□□□□ -0.122e-23■■■□□ 19.2
SMNDC1O75940 RBM3-207ENST00000488216 835 ntTSL 314.21□□□□□ -0.132e-23■■■□□ 19.2
SMNDC1O75940 RBM3-205ENST00000472897 501 ntTSL 513.94□□□□□ -0.182e-23■■■□□ 19.2
SMNDC1O75940 RBM3-208ENST00000489344 724 ntTSL 212.53□□□□□ -0.42e-23■■■□□ 19.2
SMNDC1O75940 RBM3-203ENST00000376759 2162 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.492e-23■■■□□ 19.2
SMNDC1O75940 RBM3-209ENST00000490127 567 ntTSL 510.12□□□□□ -0.792e-23■■■□□ 19.2
SMNDC1O75940 RPL23-208ENST00000577760 3081 nt11.69□□□□□ -0.541e-40■■■□□ 19.2
SMNDC1O75940 RPL23-205ENST00000470646 333 ntTSL 311.67□□□□□ -0.541e-40■■■□□ 19.2
SMNDC1O75940 RPL23-202ENST00000378096 392 ntTSL 310.82□□□□□ -0.681e-40■■■□□ 19.2
SMNDC1O75940 RPL23-203ENST00000394332 625 ntAPPRIS P1 TSL 5 BASIC10.82□□□□□ -0.681e-40■■■□□ 19.2
SMNDC1O75940 RPL23-207ENST00000577407 615 ntTSL 2 BASIC10.82□□□□□ -0.681e-40■■■□□ 19.2
SMNDC1O75940 RPL23-204ENST00000394333 444 ntTSL 2 BASIC10.31□□□□□ -0.761e-40■■■□□ 19.2
SMNDC1O75940 RPL23-211ENST00000584912 2779 ntTSL 1 (best)10.29□□□□□ -0.761e-40■■■□□ 19.2
SMNDC1O75940 RPL23-206ENST00000479035 2821 ntAPPRIS P1 TSL 1 (best) BASIC9.13□□□□□ -0.951e-40■■■□□ 19.2
SMNDC1O75940 RPL23-201ENST00000245857 588 ntTSL 3 BASIC8.97□□□□□ -0.971e-40■■■□□ 19.2
SMNDC1O75940 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC17.84■□□□□ 0.452e-6■■■□□ 19.2
SMNDC1O75940 SEPT9-203ENST00000427177 3821 ntAPPRIS P4 TSL 1 (best) BASIC13.63□□□□□ -0.232e-6■■■□□ 19.2
SMNDC1O75940 SEPT9-207ENST00000449803 3996 ntTSL 2 BASIC13.25□□□□□ -0.292e-6■■■□□ 19.2
SMNDC1O75940 SEPT9-206ENST00000431235 4004 ntTSL 5 BASIC11.31□□□□□ -0.62e-6■■■□□ 19.2
SMNDC1O75940 IST1-203ENST00000378799 4843 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.313e-6■■■□□ 19.2
SMNDC1O75940 IST1-201ENST00000329908 2356 ntTSL 1 (best) BASIC11.83□□□□□ -0.523e-6■■■□□ 19.2
SMNDC1O75940 IST1-219ENST00000541571 1962 ntAPPRIS P1 TSL 2 BASIC11.38□□□□□ -0.593e-6■■■□□ 19.2
SMNDC1O75940 IST1-221ENST00000544564 1500 ntAPPRIS P1 TSL 2 BASIC11.22□□□□□ -0.613e-6■■■□□ 19.2
SMNDC1O75940 IST1-205ENST00000439924 1841 ntTSL 510.7□□□□□ -0.73e-6■■■□□ 19.2
SMNDC1O75940 IST1-215ENST00000538850 1125 ntTSL 3 BASIC10.08□□□□□ -0.83e-6■■■□□ 19.2
SMNDC1O75940 IST1-222ENST00000545388 630 ntTSL 210.06□□□□□ -0.83e-6■■■□□ 19.2
SMNDC1O75940 IST1-211ENST00000537613 894 ntTSL 29.88□□□□□ -0.833e-6■■■□□ 19.2
SMNDC1O75940 IST1-213ENST00000538565 1245 ntTSL 29.87□□□□□ -0.833e-6■■■□□ 19.2
SMNDC1O75940 IST1-202ENST00000378798 2255 ntTSL 1 (best) BASIC9.81□□□□□ -0.843e-6■■■□□ 19.2
SMNDC1O75940 IST1-226ENST00000606369 3583 ntTSL 2 BASIC9.73□□□□□ -0.853e-6■■■□□ 19.2
SMNDC1O75940 IST1-206ENST00000456820 2031 ntTSL 59.72□□□□□ -0.853e-6■■■□□ 19.2
SMNDC1O75940 IST1-214ENST00000538709 491 ntTSL 29.37□□□□□ -0.913e-6■■■□□ 19.2
SMNDC1O75940 IST1-207ENST00000534994 674 ntTSL 59.27□□□□□ -0.933e-6■■■□□ 19.2
SMNDC1O75940 IST1-208ENST00000535424 4082 ntTSL 5 BASIC9.08□□□□□ -0.963e-6■■■□□ 19.2
SMNDC1O75940 IST1-220ENST00000541918 908 ntTSL 57.44□□□□□ -1.223e-6■■■□□ 19.2
SMNDC1O75940 IST1-210ENST00000537571 603 ntTSL 24.95□□□□□ -1.623e-6■■■□□ 19.2
SMNDC1O75940 IST1-227ENST00000626438 126 ntTSL 5 BASIC1.64□□□□□ -2.153e-6■■■□□ 19.2
SMNDC1O75940 PTBP1-208ENST00000585956 767 ntTSL 317.65■□□□□ 0.422e-6■■■□□ 19.2
SMNDC1O75940 PTBP1-205ENST00000585535 314 ntTSL 310.23□□□□□ -0.772e-6■■■□□ 19.2
SMNDC1O75940 FN1-217ENST00000471193 496 ntTSL 310.22□□□□□ -0.779e-24■■■□□ 19.2
SMNDC1O75940 C19orf25-205ENST00000588427 853 ntTSL 1 (best) BASIC12.8□□□□□ -0.363e-6■■■□□ 19.2
SMNDC1O75940 EIF4A2-209ENST00000461021 575 ntTSL 27.97□□□□□ -1.133e-21■■■□□ 19.2
SMNDC1O75940 PTMA-205ENST00000410064 814 ntTSL 2 BASIC19.98■□□□□ 0.797e-7■■■□□ 19.2
SMNDC1O75940 KANSL2-209ENST00000548701 922 ntTSL 38.93□□□□□ -0.983e-60■■■□□ 19.1
SMNDC1O75940 KANSL2-210ENST00000549463 650 ntTSL 56.96□□□□□ -1.33e-60■■■□□ 19.1
SMNDC1O75940 SNORA2C-201ENST00000408564 137 ntBASIC6.67□□□□□ -1.343e-60■■■□□ 19.1
SMNDC1O75940 PLCG1-208ENST00000477870 1051 ntTSL 211.7□□□□□ -0.542e-7■■■□□ 19.1
SMNDC1O75940 PLCG1-220ENST00000617873 583 ntTSL 311.12□□□□□ -0.632e-7■■■□□ 19.1
SMNDC1O75940 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC18.74■□□□□ 0.591e-16■■■□□ 19.1
SMNDC1O75940 NUDT4-201ENST00000337179 9753 ntAPPRIS P3 TSL 1 (best) BASIC14.77□□□□□ -0.051e-16■■■□□ 19.1
SMNDC1O75940 NUDT4-207ENST00000550056 531 ntTSL 414.2□□□□□ -0.141e-16■■■□□ 19.1
SMNDC1O75940 NUDT4-205ENST00000548662 765 ntTSL 3 BASIC10.69□□□□□ -0.71e-16■■■□□ 19.1
SMNDC1O75940 NUDT4-203ENST00000546925 569 ntTSL 410.61□□□□□ -0.711e-16■■■□□ 19.1
SMNDC1O75940 NUDT4-204ENST00000547014 1419 ntTSL 2 BASIC9.49□□□□□ -0.891e-16■■■□□ 19.1
SMNDC1O75940 NUDT4-206ENST00000549992 3607 ntTSL 1 (best) BASIC9.13□□□□□ -0.951e-16■■■□□ 19.1
SMNDC1O75940 THOP1-211ENST00000590970 1104 ntTSL 315.97■□□□□ 0.151e-7■■■□□ 19.1
SMNDC1O75940 THOP1-213ENST00000591363 639 ntTSL 514.86□□□□□ -0.031e-7■■■□□ 19.1
SMNDC1O75940 UBE2I-212ENST00000566159 2642 nt16.85■□□□□ 0.294e-6■■■□□ 19.1
SMNDC1O75940 UBE2I-214ENST00000566775 396 ntTSL 39.01□□□□□ -0.974e-6■■■□□ 19.1
SMNDC1O75940 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.928e-9■■■□□ 19.1
SMNDC1O75940 RBM38-205ENST00000440234 686 ntTSL 2 BASIC19.77■□□□□ 0.768e-9■■■□□ 19.1
SMNDC1O75940 RBM38-201ENST00000342690 852 ntTSL 319.48■□□□□ 0.718e-9■■■□□ 19.1
SMNDC1O75940 RBM38-202ENST00000344785 2193 ntTSL 518.15■□□□□ 0.58e-9■■■□□ 19.1
SMNDC1O75940 RBM38-204ENST00000371219 760 ntTSL 2 BASIC13.07□□□□□ -0.328e-9■■■□□ 19.1
SMNDC1O75940 CHKB-210ENST00000484266 1401 ntTSL 229.28■■■□□ 2.286e-8■■■□□ 19.1
SMNDC1O75940 CHKB-207ENST00000476289 1010 ntTSL 528.93■■■□□ 2.226e-8■■■□□ 19.1
SMNDC1O75940 CHKB-212ENST00000492582 2069 ntTSL 228.55■■■□□ 2.166e-8■■■□□ 19.1
SMNDC1O75940 CHKB-208ENST00000479003 2114 ntTSL 227.92■■■□□ 2.066e-8■■■□□ 19.1
SMNDC1O75940 CHKB-CPT1B-203ENST00000492556 4906 ntTSL 221.69■■□□□ 1.066e-8■■■□□ 19.1
SMNDC1O75940 CHKB-209ENST00000481673 1856 ntTSL 1 (best)19.08■□□□□ 0.656e-8■■■□□ 19.1
SMNDC1O75940 TAOK2-206ENST00000570844 1721 ntTSL 218.36■□□□□ 0.536e-8■■■□□ 19.1
SMNDC1O75940 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.56e-8■■■□□ 19.1
SMNDC1O75940 COLCA2-203ENST00000528846 823 ntTSL 317.77■□□□□ 0.446e-8■■■□□ 19.1
Retrieved 100 of 11,362 protein–RNA pairs in 326.6 ms