RNA–Protein interactions for RNA: ENST00000481673.5

CHKB-209, Transcript of choline kinase beta, humanhuman

TSL 1 (best)

Gene CHKB, Length 1,856 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHKB-209ENST00000481673 NISCHQ9Y2I1 1504 aa43.77■■■■■ 4.6
CHKB-209ENST00000481673 CCDC180Q9P1Z9 1646 aa37.91■■■■□ 3.66
CHKB-209ENST00000481673 ZCCHC6Q5VYS8 1495 aaKnown RBP36.84■■■■□ 3.49
CHKB-209ENST00000481673 DCAF1Q9Y4B6 1507 aa36.28■■■■□ 3.4
CHKB-209ENST00000481673 DCAF8L2P0C7V8 631 aa36.01■■■■□ 3.36
CHKB-209ENST00000481673 SHROOM4Q9ULL8 1493 aa35.9■■■■□ 3.34
CHKB-209ENST00000481673 MYO15BQ96JP2 1530 aa35.72■■■■□ 3.31
CHKB-209ENST00000481673 ABCC9O60706 1549 aa35.41■■■■□ 3.26
CHKB-209ENST00000481673 NACADO15069 1562 aa35.29■■■■□ 3.24
CHKB-209ENST00000481673 SUPT5HO00267 1087 aaKnown RBP34.88■■■■□ 3.17
CHKB-209ENST00000481673 RB1CC1Q8TDY2 1594 aa34.85■■■■□ 3.17
CHKB-209ENST00000481673 SCRIBQ14160 1630 aa34.83■■■■□ 3.17
CHKB-209ENST00000481673 RSF1Q96T23 1441 aaPredicted RBP34.14■■■■□ 3.06
CHKB-209ENST00000481673 UNC13AQ9UPW8 1703 aa33.93■■■■□ 3.02
CHKB-209ENST00000481673 CECR2Q9BXF3 1484 aa33.9■■■■□ 3.02
CHKB-209ENST00000481673 BAZ1AQ9NRL2 1556 aaPredicted RBP33.79■■■■□ 3
CHKB-209ENST00000481673 MROH2BQ7Z745 1585 aa33.77■■■■□ 3
CHKB-209ENST00000481673 BICRAQ9NZM4 1560 aa33.68■■■□□ 2.98
CHKB-209ENST00000481673 CHIC1Q5VXU3 224 aa33.67■■■□□ 2.98
CHKB-209ENST00000481673 PABPN1Q86U42 306 aaKnown RBP eCLIP33.52■■■□□ 2.969e-7■□□□□ 10.2
CHKB-209ENST00000481673 SMARCA4P51532 1647 aa33.49■■■□□ 2.95
CHKB-209ENST00000481673 WIZO95785 1651 aa33.45■■■□□ 2.95
CHKB-209ENST00000481673 TOP2AP11388 1531 aaKnown RBP33.22■■■□□ 2.91
CHKB-209ENST00000481673 PEG3Q9GZU2 1588 aa33.14■■■□□ 2.9
CHKB-209ENST00000481673 SMARCA2P51531 1590 aa32.92■■■□□ 2.86
CHKB-209ENST00000481673 CCDC88BA6NC98 1476 aa32.9■■■□□ 2.86
CHKB-209ENST00000481673 ATAD2BQ9ULI0 1458 aa32.9■■■□□ 2.86
CHKB-209ENST00000481673 TRIM41Q8WV44 630 aa32.86■■■□□ 2.85
CHKB-209ENST00000481673 BAZ1BQ9UIG0 1483 aaKnown RBP32.73■■■□□ 2.83
CHKB-209ENST00000481673 EIF4G1Q04637 1599 aaKnown RBP32.73■■■□□ 2.83
CHKB-209ENST00000481673 NCAPD3P42695 1498 aa32.61■■■□□ 2.81
CHKB-209ENST00000481673 HMGXB3Q12766 1538 aa32.54■■■□□ 2.8
CHKB-209ENST00000481673 LOC105371045A0A1W2PR82 267 aa32.32■■■□□ 2.76
CHKB-209ENST00000481673 ABCC8Q09428 1581 aa32.24■■■□□ 2.75
CHKB-209ENST00000481673 WRNQ14191 1432 aaPredicted RBP eCLIP32.14■■■□□ 2.74
CHKB-209ENST00000481673 FAM9AQ8IZU1 332 aaPredicted RBP32.13■■■□□ 2.73
CHKB-209ENST00000481673 CC2D2AQ9P2K1 1620 aa32.04■■■□□ 2.72
CHKB-209ENST00000481673 EEA1Q15075 1411 aa32.04■■■□□ 2.72
CHKB-209ENST00000481673 CFTRP13569 1480 aa31.98■■■□□ 2.71
CHKB-209ENST00000481673 SYNJ1O43426 1573 aa31.86■■■□□ 2.69
CHKB-209ENST00000481673 SOGA1O94964 1423 aa31.81■■■□□ 2.68
CHKB-209ENST00000481673 CADPSQ9ULU8 1353 aa31.8■■■□□ 2.68
CHKB-209ENST00000481673 TOP2BQ02880 1626 aa31.78■■■□□ 2.68
CHKB-209ENST00000481673 CSRNP3Q8WYN3 585 aa31.78■■■□□ 2.68
CHKB-209ENST00000481673 BIVM-ERCC5R4GMW8 1640 aa31.7■■■□□ 2.66
CHKB-209ENST00000481673 PRDM2Q13029 1718 aa31.66■■■□□ 2.66
CHKB-209ENST00000481673 RUSC2Q8N2Y8 1516 aa31.6■■■□□ 2.65
CHKB-209ENST00000481673 EHMT2Q96KQ7 1210 aa31.56■■■□□ 2.64
CHKB-209ENST00000481673 TNIKQ9UKE5 1360 aa31.55■■■□□ 2.64
CHKB-209ENST00000481673 CUX1P39880 1505 aa31.54■■■□□ 2.64
CHKB-209ENST00000481673 GOLGA3Q08378 1498 aa31.51■■■□□ 2.64
CHKB-209ENST00000481673 CEP164Q9UPV0 1460 aa31.49■■■□□ 2.63
CHKB-209ENST00000481673 KIF21BO75037 1637 aa31.44■■■□□ 2.62
CHKB-209ENST00000481673 FANCD2Q9BXW9 1451 aa31.39■■■□□ 2.62
CHKB-209ENST00000481673 UBTFP17480 764 aaKnown RBP31.38■■■□□ 2.61
CHKB-209ENST00000481673 TRIM26Q12899 539 aaPredicted RBP31.38■■■□□ 2.61
CHKB-209ENST00000481673 PCGF6Q9BYE7 350 aa31.37■■■□□ 2.61
CHKB-209ENST00000481673 LAMC3Q9Y6N6 1575 aa31.37■■■□□ 2.61
CHKB-209ENST00000481673 KIF27Q86VH2 1401 aa31.34■■■□□ 2.61
CHKB-209ENST00000481673 CEP162Q5TB80 1403 aa31.33■■■□□ 2.61
CHKB-209ENST00000481673 ERICH3Q5RHP9 1530 aa31.2■■■□□ 2.59
CHKB-209ENST00000481673 PRXQ9BXM0 1461 aa31.2■■■□□ 2.59
CHKB-209ENST00000481673 PDS5BQ9NTI5 1447 aa31.19■■■□□ 2.58
CHKB-209ENST00000481673 NESP48681 1621 aa31.19■■■□□ 2.58
CHKB-209ENST00000481673 DNMBPQ6XZF7 1577 aa31.17■■■□□ 2.58
CHKB-209ENST00000481673 FGD5Q6ZNL6 1462 aa31.15■■■□□ 2.58
CHKB-209ENST00000481673 RAPGEF2Q9Y4G8 1499 aa31.15■■■□□ 2.58
CHKB-209ENST00000481673 TOPBP1Q92547 1522 aa31.08■■■□□ 2.57
CHKB-209ENST00000481673 CUX2O14529 1486 aa31.07■■■□□ 2.56
CHKB-209ENST00000481673 DNAJC5BQ9UF47 199 aa31.04■■■□□ 2.56
CHKB-209ENST00000481673 CLIP1P30622 1438 aa31.02■■■□□ 2.56
CHKB-209ENST00000481673 IGF1RP08069 1367 aa30.99■■■□□ 2.55
CHKB-209ENST00000481673 POLA1P09884 1462 aaPredicted RBP30.96■■■□□ 2.55
CHKB-209ENST00000481673 ABCA10Q8WWZ4 1543 aa30.96■■■□□ 2.55
CHKB-209ENST00000481673 URB2Q14146 1524 aaKnown RBP30.91■■■□□ 2.54
CHKB-209ENST00000481673 HRCP23327 699 aa30.89■■■□□ 2.54
CHKB-209ENST00000481673 CARMIL1Q5VZK9 1371 aa30.85■■■□□ 2.53
CHKB-209ENST00000481673 VPS8Q8N3P4 1428 aa30.82■■■□□ 2.52
CHKB-209ENST00000481673 RAD54L2Q9Y4B4 1467 aa30.82■■■□□ 2.52
CHKB-209ENST00000481673 KIF21AQ7Z4S6 1674 aa30.76■■■□□ 2.51
CHKB-209ENST00000481673 PPARGC1BQ86YN6 1023 aaKnown RBP30.68■■■□□ 2.5
CHKB-209ENST00000481673 MRC2Q9UBG0 1479 aa30.68■■■□□ 2.5
CHKB-209ENST00000481673 APLP2Q06481 763 aa30.65■■■□□ 2.5
CHKB-209ENST00000481673 WDR97A6NE52 1622 aa30.65■■■□□ 2.5
CHKB-209ENST00000481673 CUL7Q14999 1698 aa30.65■■■□□ 2.5
CHKB-209ENST00000481673 RANGAP1P46060 587 aaPredicted RBP30.58■■■□□ 2.49
CHKB-209ENST00000481673 ABCA5Q8WWZ7 1642 aa30.57■■■□□ 2.48
CHKB-209ENST00000481673 GAPVD1Q14C86 1478 aa30.57■■■□□ 2.48
CHKB-209ENST00000481673 ARAP1Q96P48 1450 aa30.57■■■□□ 2.48
CHKB-209ENST00000481673 TDRD9Q8NDG6 1382 aaKnown RBP30.53■■■□□ 2.48
CHKB-209ENST00000481673 TARBP1Q13395 1621 aaKnown RBP30.52■■■□□ 2.48
CHKB-209ENST00000481673 ARHGAP35Q9NRY4 1499 aa30.51■■■□□ 2.48
CHKB-209ENST00000481673 ZEB1P37275 1124 aaPredicted RBP30.47■■■□□ 2.47
CHKB-209ENST00000481673 WDR62O43379 1518 aa30.47■■■□□ 2.47
CHKB-209ENST00000481673 IFT140Q96RY7 1462 aa30.42■■■□□ 2.46
CHKB-209ENST00000481673 ERCC6Q03468 1493 aa30.39■■■□□ 2.46
CHKB-209ENST00000481673 TTBK1Q5TCY1 1321 aaPredicted RBP30.34■■■□□ 2.45
CHKB-209ENST00000481673 EFCAB5A4FU69 1503 aa30.33■■■□□ 2.45
CHKB-209ENST00000481673 FHAD1B1AJZ9 1412 aa30.32■■■□□ 2.44
CHKB-209ENST00000481673 GRIN2BQ13224 1484 aa30.29■■■□□ 2.44
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms