RNA–Protein interactions for RNA: ENST00000476289.5

CHKB-207, Transcript of choline kinase beta, humanhuman

TSL 5

Gene CHKB, Length 1,010 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHKB-207ENST00000476289 NISCHQ9Y2I1 1504 aa79.66■■■■■ 10.34
CHKB-207ENST00000476289 CCDC180Q9P1Z9 1646 aa71.14■■■■■ 8.98
CHKB-207ENST00000476289 ABCC9O60706 1549 aa70.35■■■■■ 8.85
CHKB-207ENST00000476289 RB1CC1Q8TDY2 1594 aa67.3■■■■■ 8.36
CHKB-207ENST00000476289 NACADO15069 1562 aa67.03■■■■■ 8.32
CHKB-207ENST00000476289 DCAF8L2P0C7V8 631 aa66.79■■■■■ 8.28
CHKB-207ENST00000476289 MYO15BQ96JP2 1530 aa66.37■■■■■ 8.21
CHKB-207ENST00000476289 ZCCHC6Q5VYS8 1495 aaKnown RBP66.23■■■■■ 8.19
CHKB-207ENST00000476289 UNC13AQ9UPW8 1703 aa65.86■■■■■ 8.13
CHKB-207ENST00000476289 DCAF1Q9Y4B6 1507 aa65.84■■■■■ 8.13
CHKB-207ENST00000476289 PABPN1Q86U42 306 aaKnown RBP eCLIP65.59■■■■■ 8.093e-7■□□□□ 8.9
CHKB-207ENST00000476289 BICRAQ9NZM4 1560 aa65.38■■■■■ 8.06
CHKB-207ENST00000476289 DNAJC5BQ9UF47 199 aa65.25■■■■■ 8.04
CHKB-207ENST00000476289 SCRIBQ14160 1630 aa64.91■■■■■ 7.98
CHKB-207ENST00000476289 SHROOM4Q9ULL8 1493 aa64.49■■■■■ 7.91
CHKB-207ENST00000476289 EIF4G1Q04637 1599 aaKnown RBP63.67■■■■■ 7.78
CHKB-207ENST00000476289 CC2D2AQ9P2K1 1620 aa63.6■■■■■ 7.77
CHKB-207ENST00000476289 CECR2Q9BXF3 1484 aa63.26■■■■■ 7.72
CHKB-207ENST00000476289 SMARCA4P51532 1647 aa61.99■■■■■ 7.51
CHKB-207ENST00000476289 NCAPD3P42695 1498 aa61.87■■■■■ 7.49
CHKB-207ENST00000476289 ATAD2BQ9ULI0 1458 aa61.82■■■■■ 7.49
CHKB-207ENST00000476289 BAZ1AQ9NRL2 1556 aaPredicted RBP61.77■■■■■ 7.48
CHKB-207ENST00000476289 SMARCA2P51531 1590 aa61.67■■■■■ 7.46
CHKB-207ENST00000476289 HMGXB3Q12766 1538 aa61.52■■■■■ 7.44
CHKB-207ENST00000476289 MROH2BQ7Z745 1585 aa61.43■■■■■ 7.42
CHKB-207ENST00000476289 PEG3Q9GZU2 1588 aa61.38■■■■■ 7.42
CHKB-207ENST00000476289 BAZ1BQ9UIG0 1483 aaKnown RBP61.26■■■■■ 7.4
CHKB-207ENST00000476289 WIZO95785 1651 aa60.74■■■■■ 7.31
CHKB-207ENST00000476289 NESP48681 1621 aa60.7■■■■■ 7.31
CHKB-207ENST00000476289 ERCC6Q03468 1493 aa60.63■■■■■ 7.3
CHKB-207ENST00000476289 RSF1Q96T23 1441 aaPredicted RBP60.43■■■■■ 7.26
CHKB-207ENST00000476289 LAMC3Q9Y6N6 1575 aa60.36■■■■■ 7.25
CHKB-207ENST00000476289 CUX2O14529 1486 aa60.25■■■■■ 7.24
CHKB-207ENST00000476289 CADPSQ9ULU8 1353 aa60.01■■■■■ 7.2
CHKB-207ENST00000476289 TOP2AP11388 1531 aaKnown RBP60■■■■■ 7.2
CHKB-207ENST00000476289 KIF21AQ7Z4S6 1674 aa59.95■■■■■ 7.19
CHKB-207ENST00000476289 PDS5BQ9NTI5 1447 aa59.93■■■■■ 7.18
CHKB-207ENST00000476289 THOC2Q8NI27 1593 aaKnown RBP59.93■■■■■ 7.18
CHKB-207ENST00000476289 CFTRP13569 1480 aa59.53■■■■■ 7.12
CHKB-207ENST00000476289 MRC2Q9UBG0 1479 aa59.42■■■■■ 7.1
CHKB-207ENST00000476289 FANCD2Q9BXW9 1451 aa59.37■■■■■ 7.09
CHKB-207ENST00000476289 CEP164Q9UPV0 1460 aa59.35■■■■■ 7.09
CHKB-207ENST00000476289 CCDC88BA6NC98 1476 aa59.3■■■■■ 7.08
CHKB-207ENST00000476289 WDR62O43379 1518 aa59.27■■■■■ 7.08
CHKB-207ENST00000476289 DNAJC5Q9H3Z4 198 aa59.25■■■■■ 7.08
CHKB-207ENST00000476289 PRDM2Q13029 1718 aa59.05■■■■■ 7.04
CHKB-207ENST00000476289 URB2Q14146 1524 aaKnown RBP58.86■■■■■ 7.01
CHKB-207ENST00000476289 TOPBP1Q92547 1522 aa58.35■■■■■ 6.93
CHKB-207ENST00000476289 SUPT5HO00267 1087 aaKnown RBP58.3■■■■■ 6.92
CHKB-207ENST00000476289 DNMBPQ6XZF7 1577 aa58.2■■■■■ 6.91
CHKB-207ENST00000476289 ABCC8Q09428 1581 aa58.2■■■■■ 6.91
CHKB-207ENST00000476289 IFT140Q96RY7 1462 aa58.11■■■■■ 6.89
CHKB-207ENST00000476289 ZNF608Q9ULD9 1512 aaPredicted RBP58■■■■■ 6.88
CHKB-207ENST00000476289 POLA1P09884 1462 aaPredicted RBP57.81■■■■■ 6.85
CHKB-207ENST00000476289 TARBP1Q13395 1621 aaKnown RBP57.79■■■■■ 6.84
CHKB-207ENST00000476289 EIF4G3O43432 1585 aaKnown RBP57.74■■■■■ 6.83
CHKB-207ENST00000476289 CUX1P39880 1505 aa57.67■■■■■ 6.82
CHKB-207ENST00000476289 RAD54L2Q9Y4B4 1467 aa57.58■■■■■ 6.81
CHKB-207ENST00000476289 OSCARQ8IYS5 282 aa57.57■■■■■ 6.81
CHKB-207ENST00000476289 FGD5Q6ZNL6 1462 aa57.57■■■■■ 6.81
CHKB-207ENST00000476289 AQRO60306 1485 aaKnown RBP eCLIP57.54■■■■■ 6.83e-8■■■■■ 28.1
CHKB-207ENST00000476289 SOGA1O94964 1423 aa57.5■■■■■ 6.8
CHKB-207ENST00000476289 TDRD9Q8NDG6 1382 aaKnown RBP57.31■■■■■ 6.76
CHKB-207ENST00000476289 WDR97A6NE52 1622 aa57.21■■■■■ 6.75
CHKB-207ENST00000476289 CHD1O14646 1710 aa57.16■■■■■ 6.74
CHKB-207ENST00000476289 TRIM41Q8WV44 630 aa57.01■■■■■ 6.72
CHKB-207ENST00000476289 SNAPC4Q5SXM2 1469 aa57■■■■■ 6.72
CHKB-207ENST00000476289 WRNQ14191 1432 aaPredicted RBP eCLIP56.97■■■■■ 6.71
CHKB-207ENST00000476289 BIVM-ERCC5R4GMW8 1640 aa56.96■■■■■ 6.71
CHKB-207ENST00000476289 SYNJ1O43426 1573 aa56.95■■■■■ 6.71
CHKB-207ENST00000476289 TOP2BQ02880 1626 aa56.95■■■■■ 6.71
CHKB-207ENST00000476289 ABCA10Q8WWZ4 1543 aa56.94■■■■■ 6.71
CHKB-207ENST00000476289 FBLN2P98095 1184 aa56.93■■■■■ 6.7
CHKB-207ENST00000476289 GRIN2BQ13224 1484 aa56.93■■■■■ 6.7
CHKB-207ENST00000476289 RIMBP3CA6NJZ7 1639 aa56.85■■■■■ 6.69
CHKB-207ENST00000476289 RIMBP3BA6NNM3 1639 aa56.85■■■■■ 6.69
CHKB-207ENST00000476289 RIMBP3Q9UFD9 1639 aa56.85■■■■■ 6.69
CHKB-207ENST00000476289 GAPVD1Q14C86 1478 aa56.85■■■■■ 6.69
CHKB-207ENST00000476289 MAGI1Q96QZ7 1491 aaPredicted RBP56.85■■■■■ 6.69
CHKB-207ENST00000476289 PBRM1Q86U86 1689 aa56.83■■■■■ 6.69
CHKB-207ENST00000476289 ABCA5Q8WWZ7 1642 aa56.83■■■■■ 6.69
CHKB-207ENST00000476289 ARHGEF11O15085 1522 aa56.75■■■■■ 6.68
CHKB-207ENST00000476289 SYNJ2O15056 1496 aa56.65■■■■■ 6.66
CHKB-207ENST00000476289 CHMP7Q8WUX9 453 aaPredicted RBP56.63■■■■■ 6.66
CHKB-207ENST00000476289 CLASP1Q7Z460 1538 aa56.51■■■■■ 6.64
CHKB-207ENST00000476289 ADAMTS12P58397 1594 aa56.34■■■■■ 6.61
CHKB-207ENST00000476289 ARAP1Q96P48 1450 aa56.26■■■■■ 6.6
CHKB-207ENST00000476289 ERICH3Q5RHP9 1530 aa56.23■■■■■ 6.59
CHKB-207ENST00000476289 GRIN2AQ12879 1464 aa56.23■■■■■ 6.59
CHKB-207ENST00000476289 CYB5RLQ6IPT4 315 aa56.2■■■■■ 6.59
CHKB-207ENST00000476289 FHAD1B1AJZ9 1412 aa56.14■■■■■ 6.58
CHKB-207ENST00000476289 CEP170Q5SW79 1584 aa56.03■■■■■ 6.56
CHKB-207ENST00000476289 NUP160Q12769 1436 aa56.01■■■■■ 6.56
CHKB-207ENST00000476289 KIF27Q86VH2 1401 aa55.8■■■■■ 6.52
CHKB-207ENST00000476289 ERCC6L2Q5T890 1561 aa55.72■■■■■ 6.51
CHKB-207ENST00000476289 IGF1RP08069 1367 aa55.69■■■■■ 6.51
CHKB-207ENST00000476289 SHROOM2Q13796 1616 aa55.69■■■■■ 6.51
CHKB-207ENST00000476289 CUL7Q14999 1698 aa55.59■■■■■ 6.49
CHKB-207ENST00000476289 RUSC2Q8N2Y8 1516 aa55.54■■■■■ 6.48
CHKB-207ENST00000476289 PRG4Q92954 1404 aaPredicted RBP55.38■■■■■ 6.46
Retrieved 100 of 20,778 RNA–protein pairs in 8.3 ms