RNA–Protein interactions for RNA: ENST00000406938.2

CHKB-201, Transcript of choline kinase beta, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CHKB, Length 1,638 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHKB-201ENST00000406938 NISCHQ9Y2I1 1504 aa47.88■■■■■ 5.26
CHKB-201ENST00000406938 CCDC180Q9P1Z9 1646 aa42.1■■■■■ 4.33
CHKB-201ENST00000406938 ABCC9O60706 1549 aa40.3■■■■■ 4.04
CHKB-201ENST00000406938 ZCCHC6Q5VYS8 1495 aaKnown RBP40.12■■■■■ 4.01
CHKB-201ENST00000406938 DCAF8L2P0C7V8 631 aa39.62■■■■□ 3.93
CHKB-201ENST00000406938 DCAF1Q9Y4B6 1507 aa39.62■■■■□ 3.93
CHKB-201ENST00000406938 MYO15BQ96JP2 1530 aa39.41■■■■□ 3.9
CHKB-201ENST00000406938 NACADO15069 1562 aa39.33■■■■□ 3.89
CHKB-201ENST00000406938 RB1CC1Q8TDY2 1594 aa39.15■■■■□ 3.86
CHKB-201ENST00000406938 SCRIBQ14160 1630 aa38.58■■■■□ 3.77
CHKB-201ENST00000406938 SHROOM4Q9ULL8 1493 aa38.54■■■■□ 3.76
CHKB-201ENST00000406938 UNC13AQ9UPW8 1703 aa38.3■■■■□ 3.72
CHKB-201ENST00000406938 BICRAQ9NZM4 1560 aa37.97■■■■□ 3.67
CHKB-201ENST00000406938 PABPN1Q86U42 306 aaKnown RBP eCLIP37.83■■■■□ 3.659e-7■□□□□ 10.2
CHKB-201ENST00000406938 CECR2Q9BXF3 1484 aa37.23■■■■□ 3.55
CHKB-201ENST00000406938 BAZ1AQ9NRL2 1556 aaPredicted RBP37.04■■■■□ 3.52
CHKB-201ENST00000406938 SMARCA4P51532 1647 aa36.96■■■■□ 3.51
CHKB-201ENST00000406938 MROH2BQ7Z745 1585 aa36.95■■■■□ 3.51
CHKB-201ENST00000406938 EIF4G1Q04637 1599 aaKnown RBP36.88■■■■□ 3.5
CHKB-201ENST00000406938 RSF1Q96T23 1441 aaPredicted RBP36.88■■■■□ 3.49
CHKB-201ENST00000406938 SUPT5HO00267 1087 aaKnown RBP36.73■■■■□ 3.47
CHKB-201ENST00000406938 WIZO95785 1651 aa36.61■■■■□ 3.45
CHKB-201ENST00000406938 PEG3Q9GZU2 1588 aa36.55■■■■□ 3.44
CHKB-201ENST00000406938 ATAD2BQ9ULI0 1458 aa36.49■■■■□ 3.43
CHKB-201ENST00000406938 CC2D2AQ9P2K1 1620 aa36.48■■■■□ 3.43
CHKB-201ENST00000406938 SMARCA2P51531 1590 aa36.48■■■■□ 3.43
CHKB-201ENST00000406938 NCAPD3P42695 1498 aa36.29■■■■□ 3.4
CHKB-201ENST00000406938 TOP2AP11388 1531 aaKnown RBP36.26■■■■□ 3.4
CHKB-201ENST00000406938 BAZ1BQ9UIG0 1483 aaKnown RBP36.26■■■■□ 3.39
CHKB-201ENST00000406938 HMGXB3Q12766 1538 aa36.22■■■■□ 3.39
CHKB-201ENST00000406938 DNAJC5BQ9UF47 199 aa36.07■■■■□ 3.36
CHKB-201ENST00000406938 CCDC88BA6NC98 1476 aa35.82■■■■□ 3.33
CHKB-201ENST00000406938 CFTRP13569 1480 aa35.32■■■■□ 3.24
CHKB-201ENST00000406938 CADPSQ9ULU8 1353 aa35.29■■■■□ 3.24
CHKB-201ENST00000406938 NESP48681 1621 aa35.19■■■■□ 3.22
CHKB-201ENST00000406938 LAMC3Q9Y6N6 1575 aa35.18■■■■□ 3.22
CHKB-201ENST00000406938 PRDM2Q13029 1718 aa35.1■■■■□ 3.21
CHKB-201ENST00000406938 FANCD2Q9BXW9 1451 aa34.92■■■■□ 3.18
CHKB-201ENST00000406938 PDS5BQ9NTI5 1447 aa34.9■■■■□ 3.18
CHKB-201ENST00000406938 ABCC8Q09428 1581 aa34.88■■■■□ 3.17
CHKB-201ENST00000406938 CHIC1Q5VXU3 224 aa34.84■■■■□ 3.17
CHKB-201ENST00000406938 CEP164Q9UPV0 1460 aa34.78■■■■□ 3.16
CHKB-201ENST00000406938 KIF21AQ7Z4S6 1674 aa34.78■■■■□ 3.16
CHKB-201ENST00000406938 WRNQ14191 1432 aaPredicted RBP eCLIP34.74■■■■□ 3.15
CHKB-201ENST00000406938 ERCC6Q03468 1493 aa34.64■■■■□ 3.14
CHKB-201ENST00000406938 SYNJ1O43426 1573 aa34.64■■■■□ 3.14
CHKB-201ENST00000406938 CUX1P39880 1505 aa34.61■■■■□ 3.13
CHKB-201ENST00000406938 TRIM41Q8WV44 630 aa34.59■■■■□ 3.13
CHKB-201ENST00000406938 TOP2BQ02880 1626 aa34.55■■■■□ 3.12
CHKB-201ENST00000406938 BIVM-ERCC5R4GMW8 1640 aa34.54■■■■□ 3.12
CHKB-201ENST00000406938 URB2Q14146 1524 aaKnown RBP34.52■■■■□ 3.12
CHKB-201ENST00000406938 MRC2Q9UBG0 1479 aa34.52■■■■□ 3.12
CHKB-201ENST00000406938 DNMBPQ6XZF7 1577 aa34.51■■■■□ 3.12
CHKB-201ENST00000406938 TOPBP1Q92547 1522 aa34.48■■■■□ 3.11
CHKB-201ENST00000406938 THOC2Q8NI27 1593 aaKnown RBP34.42■■■■□ 3.1
CHKB-201ENST00000406938 WDR62O43379 1518 aa34.37■■■■□ 3.09
CHKB-201ENST00000406938 FGD5Q6ZNL6 1462 aa34.33■■■■□ 3.09
CHKB-201ENST00000406938 POLA1P09884 1462 aaPredicted RBP34.26■■■■□ 3.08
CHKB-201ENST00000406938 RAD54L2Q9Y4B4 1467 aa34.11■■■■□ 3.05
CHKB-201ENST00000406938 SOGA1O94964 1423 aa34.1■■■■□ 3.05
CHKB-201ENST00000406938 CUX2O14529 1486 aa34.09■■■■□ 3.05
CHKB-201ENST00000406938 ABCA10Q8WWZ4 1543 aa34.02■■■■□ 3.04
CHKB-201ENST00000406938 TARBP1Q13395 1621 aaKnown RBP34.02■■■■□ 3.04
CHKB-201ENST00000406938 WDR97A6NE52 1622 aa33.99■■■■□ 3.03
CHKB-201ENST00000406938 IFT140Q96RY7 1462 aa33.99■■■■□ 3.03
CHKB-201ENST00000406938 RUSC2Q8N2Y8 1516 aa33.97■■■■□ 3.03
CHKB-201ENST00000406938 FAM9AQ8IZU1 332 aaPredicted RBP33.92■■■■□ 3.02
CHKB-201ENST00000406938 EEA1Q15075 1411 aa33.91■■■■□ 3.02
CHKB-201ENST00000406938 KIF27Q86VH2 1401 aa33.91■■■■□ 3.02
CHKB-201ENST00000406938 TDRD9Q8NDG6 1382 aaKnown RBP33.83■■■■□ 3.01
CHKB-201ENST00000406938 ABCA5Q8WWZ7 1642 aa33.82■■■■□ 3
CHKB-201ENST00000406938 ZNF608Q9ULD9 1512 aaPredicted RBP33.8■■■■□ 3
CHKB-201ENST00000406938 GAPVD1Q14C86 1478 aa33.75■■■□□ 2.99
CHKB-201ENST00000406938 AQRO60306 1485 aaKnown RBP eCLIP33.73■■■□□ 2.993e-8■■■■■ 28.1
CHKB-201ENST00000406938 CSRNP3Q8WYN3 585 aa33.72■■■□□ 2.99
CHKB-201ENST00000406938 EIF4G3O43432 1585 aaKnown RBP33.71■■■□□ 2.99
CHKB-201ENST00000406938 IGF1RP08069 1367 aa33.65■■■□□ 2.98
CHKB-201ENST00000406938 ERICH3Q5RHP9 1530 aa33.62■■■□□ 2.97
CHKB-201ENST00000406938 PBRM1Q86U86 1689 aa33.62■■■□□ 2.97
CHKB-201ENST00000406938 GRIN2BQ13224 1484 aa33.59■■■□□ 2.97
CHKB-201ENST00000406938 PRXQ9BXM0 1461 aa33.54■■■□□ 2.96
CHKB-201ENST00000406938 KIF21BO75037 1637 aa33.52■■■□□ 2.96
CHKB-201ENST00000406938 CUL7Q14999 1698 aa33.51■■■□□ 2.96
CHKB-201ENST00000406938 CARMIL1Q5VZK9 1371 aa33.47■■■□□ 2.95
CHKB-201ENST00000406938 SNAPC4Q5SXM2 1469 aa33.45■■■□□ 2.95
CHKB-201ENST00000406938 EHMT2Q96KQ7 1210 aa33.45■■■□□ 2.95
CHKB-201ENST00000406938 LOC105371045A0A1W2PR82 267 aa33.44■■■□□ 2.94
CHKB-201ENST00000406938 RAPGEF2Q9Y4G8 1499 aa33.43■■■□□ 2.94
CHKB-201ENST00000406938 ADAMTS12P58397 1594 aa33.43■■■□□ 2.94
CHKB-201ENST00000406938 GOLGA3Q08378 1498 aa33.42■■■□□ 2.94
CHKB-201ENST00000406938 MAGI1Q96QZ7 1491 aaPredicted RBP33.4■■■□□ 2.94
CHKB-201ENST00000406938 FHAD1B1AJZ9 1412 aa33.38■■■□□ 2.93
CHKB-201ENST00000406938 SYNJ2O15056 1496 aa33.27■■■□□ 2.92
CHKB-201ENST00000406938 UBTFP17480 764 aaKnown RBP33.22■■■□□ 2.91
CHKB-201ENST00000406938 GRIN2AQ12879 1464 aa33.19■■■□□ 2.9
CHKB-201ENST00000406938 TNIKQ9UKE5 1360 aa33.15■■■□□ 2.9
CHKB-201ENST00000406938 CHMP7Q8WUX9 453 aaPredicted RBP33.15■■■□□ 2.9
CHKB-201ENST00000406938 FBLN2P98095 1184 aa33.12■■■□□ 2.89
CHKB-201ENST00000406938 CHD1O14646 1710 aa33.07■■■□□ 2.89
CHKB-201ENST00000406938 CTTNBP2Q8WZ74 1663 aa33.03■■■□□ 2.88
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms